BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11572.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919976 jgi|Araly1|919976|scaffold_101257.1 464 3e-130
> Ahg919976 jgi|Araly1|919976|scaffold_101257.1
Length=312
Score = 464 bits (251), Expect = 3e-130
Identities = 279/293 (95%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 78 TCAACTTCTCACGAACTACAATATGAAGAACCGGAGCAAAAACTTAGCCACCCTGAGTTT 137
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 TCAACTTCTCACGAACTAAAATATGAAGAGCCGGAGCAGAAACTTAGCCACCCTGAGTTT 60
Query 138 GATGATAATTACGTTATTGACATGGTCGGATATCGTAGTAGGACAAGAAGCACTACTAGG 197
||||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||
Sbjct 61 GATGATAATTACGTTATTGACATGGACGAATATCGTGGAAGGACAAGAAGCACTACTAGG 120
Query 198 AAAGAAAGTATTGCCGCTATGCCACAGAGAATGTATGCCAATATGCATGAAAGTGATCGA 257
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 121 TAAGAAAGTATTGCCGCTATGTCACAGAGAATGTATGCCAATATGCATGAAAGTGACCGA 180
Query 258 AGCCACGCAAGACATTTGCGAACCTGCATGCCAATCTGGTTGTCTTCAGCTTCAAGGTAG 317
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGCCACGCAAGAGATTTGCGAACCTGCATGCCAATCTGGTTGTCTCCAGCTTCAAGGTAG 240
Query 318 AGGCACCGGACTTTCAGCTTCCGATCAAGGAGTCGATATGGTCATTGCATAAA 370
|||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 241 AGGCACCGGACTTTCAGCCTCCGATCAAGGAGTCGATATGGTCATCGCATAAA 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5