BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11590.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914035 jgi|Araly1|914035|Al_scaffold_0001_4289 1615 0.0
Ahg931451 jgi|Araly1|931451|scaffold_303908.1 1432 0.0
Ahg914026 jgi|Araly1|914026|Al_scaffold_0001_4280 1332 0.0
Ahg914199 jgi|Araly1|914199|Al_scaffold_0001_4453 957 0.0
> Ahg914035 jgi|Araly1|914035|Al_scaffold_0001_4289
Length=1533
Score = 1615 bits (874), Expect = 0.0
Identities = 1312/1520 (86%), Gaps = 43/1520 (3%)
Strand=Plus/Plus
Query 101 TGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACT-TTTTG 159
|||| || || ||| |||||| ||| ||| ||||||||||||||||||| | |||||
Sbjct 2 TGGTGATCGGAGTTTGCAAAGGATA---TGACAACAAACAGTCATGTCAAAA-TCTTTTG 57
Query 160 TTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGAT 218
|||||||| ||| | ||| || |||||||||||| |||| ||| ||||||| ||||||||
Sbjct 58 TTGGAGCTCAAGAC-GGTATCCTCGTCACTCTCGAAGATGAGATGTCGTGATTTATTGAT 116
Query 219 CATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGTTATGATTGGTGTGATGGATGA 278
||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||
Sbjct 117 CATCGTTTTGAAGAATTCCGTGTGGAGGATCGATATGGCTATGATTGGTGTGATGGAAGA 176
Query 279 TACAAAACAACATGAGGAGATGGAGAATGATTTGCTTGGTGTGAAGGAGGACACAAAACT 338
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 177 TACAAAACTACTTGAGGAGATGGAGAATGATATGCTTGGTGTGAAGGAGGACACAAATCT 236
Query 339 ATTTGAGGAGATGATGGAGTCGACAAAAGATAGGATGATCCGTTCGGTGGAGGAACTCTT 398
|||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 237 GTTTGAGGAAATGATGGAGTCGGCAAAAGATAGGATCATCCGTTCAGTGGAGGAACTCTT 296
Query 399 AGGAGGAGAATTTCC-TAATCGTGGATCTTACGAGAACGTCCACACTTGGCTCAGTAGCG 457
| |||||||| || ||||| |||||||||||| ||||||||||||||||||||| | |
Sbjct 297 AAGAGGAGAA-AGCCATAATCTTGGATCTTACGAAAACGTCCACACTTGGCTCAGTGGTG 355
Query 458 TTCTTACTAGTTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGCCGTG 517
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 356 TTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGTCGGG 415
Query 518 TCGAGCCAAAGCTTGAAGACCTCATTTCTAGGGCAAGAATAGCTTTGGCTC-TCTTTATC 576
|||||||| |||||| ||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 416 TCGAGCCAGTGCTTGAGGACCTCATTTCTAGGGCAAGAGTAGCTTTGGC-CATTTTTATC 474
Query 577 TCCATTTCACCGAGAGACAACACCGAACTTATCTCGGTGATTCCCAATAGCCCTTCTTGG 636
|| ||||| |||| |||| |||||||||||| |||||| |||||||| |||| ||||||
Sbjct 475 TCTATTTCGCCGATAGACGACACCGAACTTAAGTCGGTGGTTCCCAATGGCCCATCTTGG 534
Query 637 TTATTC-CATGTTGACAAGAAAGATCTATATCTCAATGCTGAGGCTCTAAAGAAGATTGC 695
||| || | |||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 535 TTA-TCTAACGTTGACAAGAAATATCTATATCTCAATCCTGAGGTTCTAAAGAAGATTGC 593
Query 696 TGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGCACAGTGAATGCGGCCATTGC 755
|||||||||||||| |||||||||| |||| | |||| |||| |||||| |||||||||
Sbjct 594 CGATGTTGTGGTCGCAAAGGATGGGATCGGAGATTACAACACATTGAATGAGGCCATTGC 653
Query 756 AGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCTATATAAAGACAGGCATTTATGA 815
|| || |||| || |||| | ||||||||||||||||||||||||||||||| | |||||
Sbjct 654 AGTGGTACCTGAATACAGTCGAAAGAGATTCGTCATCTATATAAAGACAGGCGTCTATGA 713
Query 816 TGAAATCGT-CGTCATTGAGAATACGAAACCCAATTTAACTCTTATAGGTGATGGTCAAG 874
|||||| || ||| |||| || ||||||| ||||||||||||| || |||||||||||||
Sbjct 714 TGAAATTGTCCGT-ATTGGGAGTACGAAAGCCAATTTAACTCTCATCGGTGATGGTCAAG 772
Query 875 ATTTAACCATCATCACGAGCAATTTAAGTGCTAGCAATG-T--TAGAAGAACG-TTCAAC 930
||| ||||||||||||| ||||||||| |||| |||| | || || |||| |||||
Sbjct 773 ATTCAACCATCATCACGGGCAATTTAA--GCTA-TAATGATGGTAAAACAACGTTTCAA- 828
Query 931 ACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTAGACATGTGCTTCCGAAAC 990
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 829 ACCGCAACTGTTGCTTCTAATGGTAATGGTTTCATCGGAATAGACATGTGCTTCCGGAAC 888
Query 991 ACGGCCGGGCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTC 1050
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACGGCTGGACCGGCAAAGGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTC 948
Query 1051 ATTTATAGATGCCGTGTCGA-GGGATATCAGGATGCCTTGTATCCTCACAGTGACCGCCA 1109
||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || ||||||||
Sbjct 949 ATTTACCGATGTCGTATCGATGGG-TATCAGGATGCGTTGTATTCTCAAAGAGACCGCCA 1007
Query 1110 GTTTTATAGAGAGTGCTTTATTACCGGCACTGTAGATTTCATTTGTGGGAACGCGGTGGC 1169
|||||||| ||||||||||||||||||||| |||||| || ||||| ||||| | |||
Sbjct 1008 ATTTTATAGGGAGTGCTTTATTACCGGCACTACAGATTTTATCTGTGGAAACGCCGCGGC 1067
Query 1170 GGTCTTTCAATTCTGCCAGATTGTAGCAAGACAACCTAAGATGGGGCAGAGCAATGTCAT 1229
||||| ||||||||||| ||||||||||||| ||| | || || || |||||||| ||
Sbjct 1068 CGTCTTCCAATTCTGCCAAATTGTAGCAAGACTACCGATGAAAGGACATAGCAATGTGAT 1127
Query 1230 AACCGCTCAGTCACGCGCATTTAAGGACATTTA-CTCGGGCTTCACGATTCAAAAATGCA 1288
|||||||||||||||| || || ||| | | |||||||||| | |||||||||||||
Sbjct 1128 AACCGCTCAGTCACGCACAAGTATGGA-AGACAACTCGGGCTTCTCCATTCAAAAATGCA 1186
Query 1289 ACATTACTGCAAGCTCGGATCTAGA-CACG---A---CAACCGTTAAAACGTATCTTGGA 1341
| || |||||||| || |||||||| | || | ||||||| || |||||| ||||
Sbjct 1187 ATATCACTGCAAGTTCTGATCTAGATC-CGGTTAAAGCAACCGTGAAGACGTAT-TTGGG 1244
Query 1342 A-GACCTTGGAGGATATT-TTCAACAGTCGCAGTTATGCAGTCTTTCATCGGTGATTTAG 1399
| || ||||||| ||| ||||||||| | ||| | || |||||||||||||||||||
Sbjct 1245 TCGTCCATGGAGGA-ATTATTCAACAGTTGTGGTTCTACAATCTTTCATCGGTGATTTAG 1303
Query 1400 TTGATCCCGCTGGCTGGACTCCTTGGGAAGGAGAAACTGGTTTGTCAACTCTCCACTACC 1459
|||||||||| ||||||||||||||| |||||||||||||| | ||||||||| |||||
Sbjct 1304 TTGATCCCGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTATCAACTCTCTACTACG 1363
Query 1460 GCGAATATCAAAACAGGGGTCCAGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGCT 1519
|||||||||||||||| |||| ||||||||||||||||| |||||| |||||| |||| |
Sbjct 1364 GCGAATATCAAAACAGCGGTCTAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGGT 1423
Query 1520 TTAAAGTTATGAAAGATCCTAAACAGGCTACAGA-ATTCACTGT-AGCCAAGCTCTTAGA 1577
||| |||||| | |||||||||| |||||||| | ||| ||||| | ||||||| |||||
Sbjct 1424 TTAGAGTTATTACAGATCCTAAAGAGGCTACA-ACATTTACTGTTA-CCAAGCTATTAGA 1481
Query 1578 TGGAGAAACTTGGTTGAAAG 1597
|||||| | ||| ||||||
Sbjct 1482 CGGAGAATCGTGGCTGAAAG 1501
> Ahg931451 jgi|Araly1|931451|scaffold_303908.1
Length=1684
Score = 1432 bits (775), Expect = 0.0
Identities = 1255/1485 (85%), Gaps = 39/1485 (3%)
Strand=Plus/Plus
Query 112 GTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACTTTTTGTTGGAGCTTAAG 171
||| |||||| ||| ||| |||||| | |||||||||||| ||||||||||||| ||
Sbjct 144 GTTTGCAAAGGATA---TGACGACAAAAAATCATGTCAAAACCTTTTGTTGGAGCTCAA- 199
Query 172 GCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGAA 230
| ||| || |||||||| |||||||| ||| ||||||| |||||||| |||||| ||
Sbjct 200 GATGGTATCCTCGTCACTTTCGGAGATGAGATGTCGTGATTTATTGATTGCCGTTTTAAA 259
Query 231 GAATTCCGT-ACGGAGGATCGACA-TGGTTATGATTGGTGTGATGGATGATACAAAACAA 288
||| || || | ||||||| ||| ||| |||| ||||||||| ||| || || |||| |
Sbjct 260 GAACTCTGTGTC-GAGGATCAACATTGG-TATGCTTGGTGTGAGGGAAGACACGAAACTA 317
Query 289 CATGAGGAGATGGAGAA-TGATTTGCTTGGTGTGAAGGAGGACACAAAACTATTTGAGGA 347
| ||||||| |||| || | | |||||||| ||| |||||||||||| |||||||||||
Sbjct 318 CTTGAGGAGGTGGA-AAGTAAAATGCTTGGTTTGAGGGAGGACACAAATCTATTTGAGGA 376
Query 348 GATGATGGAGTCGACAAAAGATAGGATGATCCGTTCGGTGGAGGAACTCTTAGGAGGAGA 407
||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 377 GATGATGAAGTCGGCAAAAGATAGGATGATCCGTTCAGTGGAGGAACTCTTAGGAGGAGA 436
Query 408 ATTTCCTAATCGTGGATCTTACGAGAACGTCCACACTTGGCTCAGTAGCGTTCTTACTAG 467
| ||||||| |||||||||||| || |||||||||||| | ||| |||||||||||||
Sbjct 437 AAGCCCTAATCTTGGATCTTACGAAAATGTCCACACTTGGATTAGTGGCGTTCTTACTAG 496
Query 468 TTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGCCGTGTCGAGCCAAA 527
||||||||||||| |||||||||||||||||||||||||||||| || || |||||| |
Sbjct 497 CTACATCACATGTACCGACGAAATTGGTGAAGGTGCCTATAAACGTCGGGTTGAGCCAGA 556
Query 528 GCTTGAAGACCTCATTTCTAGGGCAAGAATAGCTTTGGCTC-TCTTT-ATCTCCATTTCA 585
|||||| ||||||||||||||||||||| |||||||||| | | ||| ||||||||||||
Sbjct 557 GCTTGAGGACCTCATTTCTAGGGCAAGAGTAGCTTTGGC-CAT-TTTCATCTCCATTTCA 614
Query 586 CCGAGAGACAACACCGAACTTATCTCGGTGATTCCCAATAGCCCTTCTTGGTTATTCC-A 644
||||||||| |||||||||||| |||||| || ||||| |||| || |||||| ||| |
Sbjct 615 CCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATGGCCCGTCGTGGTTA-TCCAA 673
Query 645 TGTTGACAAGAAAGATCTATATCTCAATGC-TGAGGCTCTAAAGAAGATTGCTGATGTTG 703
|||||||| ||| |||||||||| || | |||| |||||||||||||||| |||||||
Sbjct 674 CGTTGACAAAAAATATCTATATCTTTAT-CGTGAGACTCTAAAGAAGATTGCCGATGTTG 732
Query 704 TGGTCGCGAAGGATGGGACCGGAAAG-TACAGCACAGTGAATGCGGCCATTGCAGCGGCA 762
||||||||||||| |||| || ||| |||| ||||||||||||||||||||||||||||
Sbjct 733 TGGTCGCGAAGGACGGGAGTGG-AAGTTACAACACAGTGAATGCGGCCATTGCAGCGGCA 791
Query 763 CCTCAACACAGCCAAAAGAGATTCGTCATCTATATAAAGACAGGCATTTATGATGAAATC 822
||| || ||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 792 CCTAAATTCAGCCGAAAGAGATTCGTCATCTATATAAAGACAGGCGTCTATGATGAAATC 851
Query 823 GTCGTCATTGAGAATACGAAACCCAATTTAACTCTTATAGGTGATGGTCAAGATTTAACC 882
||| ||||| || || |||| ||||||||||||| || ||||| ||||||||| |||
Sbjct 852 GTCAACATTGGGATTAAGAAAGCCAATTTAACTCTCATCGGTGACAGTCAAGATTCAACT 911
Query 883 ATCATCACGAGCAATTTAAG-TGCTAGCAATGTTAGAA-GAACGTTCAACACCGCAACTG 940
||||||||| | |||||||| | |||| ||| || || | || ||| |||| |||||||
Sbjct 912 ATCATCACGGGTAATTTAAGCT-ATAGCTATGGTAAAACG-ACTTTCTACACTGCAACTG 969
Query 941 TTGCTTCTAATGGTAATGGATTCATCGGAGTAGACATGTGCTTCCGAAACACGGCCGGGC 1000
|||||||||||||| | |||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 970 TTGCTTCTAATGGTGACGGATTCATCGGAATAGACATGTGCTTTCGAAACACGGTCGGGC 1029
Query 1001 CGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTCATTTATAGAT 1060
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1030 CGGCGAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCTATCATTCACCGAT 1089
Query 1061 GCCGTGTCGAGGGATATCAGGATGCCTTGTATCCTCACAGTGACCGCCAGTTTTATAGAG 1120
| || ||||||| ||||||||||| |||||| |||||| |||||||||||||||| |
Sbjct 1090 GTTGTATCGAGGGGTATCAGGATGCGTTGTATTCTCACAAACACCGCCAGTTTTATAGGG 1149
Query 1121 AGTGCTTTATTACCGGCACTGTAGATTTCATTTGTGGGAACGCGGTGGCGGTCTTTCAAT 1180
|||||||||||||||||||| ||||||| |||||||| || || | ||||||||| ||||
Sbjct 1150 AGTGCTTTATTACCGGCACTATAGATTTTATTTGTGGAAATGCTGCGGCGGTCTTCCAAT 1209
Query 1181 TCTGCCAGATTGTAGCAAGACAACCTAAGATGGGGCAGAGCAATGTCATAACCGCTCAGT 1240
||||||| ||||| |||||| |||||| || |||||| |||||||| |||||||||||||
Sbjct 1210 TCTGCCAAATTGTTGCAAGAAAACCTATGAGGGGGCATAGCAATGTGATAACCGCTCAGT 1269
Query 1241 CACGCGCATTT-A-AG-GACATTTACTCGGGCTTCACGATTCAAAAATGCAACATTACTG 1297
|||||| | | | || |||| |||| |||||| | ||||| ||||||||||| ||||
Sbjct 1270 CACGCGTAAGTGAGAGCGACA---ACTCCGGCTTCTCAATTCAGAAATGCAACATCACTG 1326
Query 1298 CAAGCTCGGATCTAGA-CA-CG-A---CAACCGTTAAAACGTATCTTGGAAGACCTTGGA 1351
|||| || ||| |||| | | | ||||||| || || | |||||| | | ||||
Sbjct 1327 CAAGTTCCGATATAGATCCTCTTAAATCAACCGTGAAGACATTTCTTGGTCGTTCATGGA 1386
Query 1352 GGATATTTTCAACAGTCGCAGTTATGCAGTCTTTCATCGGTGATTTAGTTGATCCCGCTG 1411
||| || ||||||||| |||||| | || ||||||| ||||||||||||||||| || |
Sbjct 1387 GGAAATATTCAACAGTTGCAGTTCTACAATCTTTCAACGGTGATTTAGTTGATCATGCAG 1446
Query 1412 GCTGGACTCCTTGGGAAGGAGAAACTGGTTTGTCAACTCTCCACTACCGCGAATATCAAA 1471
| |||||||||||| |||||||| |||| | ||||||||| ||||| | ||||||||||
Sbjct 1447 GGTGGACTCCTTGGCAAGGAGAATTTGGTCTATCAACTCTCTACTACGGAGAATATCAAA 1506
Query 1472 ACAGGGGTCCAGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGCTTTAAAGTTATGA 1531
|||| |||||||||||||||||||||| |||||| |||||| |||| |||| |||||| |
Sbjct 1507 ACAGAGGTCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGGTTTAGAGTTATTA 1566
Query 1532 AAGATCCTAAACAGGCTACAGAATTCACTGT-AGCCAAGCTCTTA 1575
||||||||| ||||| || |||||||||| | ||||||| |||
Sbjct 1567 CGGATCCTAAAGAGGCTGCAAAATTCACTGTTA-CCAAGCTATTA 1610
> Ahg914026 jgi|Araly1|914026|Al_scaffold_0001_4280
Length=1548
Score = 1332 bits (721), Expect = 0.0
Identities = 1020/1164 (88%), Gaps = 22/1164 (2%)
Strand=Plus/Plus
Query 91 ATAACAATGGTGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAA 150
||||||| ||| | || || ||| |||||| ||| ||| ||||||||||||||||||
Sbjct 106 ATAACAACGGT-G--ATCGGGGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAA 159
Query 151 AACT-TTTTGTTGGAGCTTAAGGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTG 208
|| | ||||||||||||| || | |||| || ||||||||||||||||| | | ||||||
Sbjct 160 AA-TATTTTGTTGGAGCTCAA-GAGGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTG 217
Query 209 ACTTATTGATCATCGTTTTGAAGAATTCCGTACGGAGGATCGACATGGTTATGATTGGTG 268
| ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 218 AGTTATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTG 277
Query 269 TGATGGATGATACAAAACAACATGAGGAGATGGAGAATGATTTGCTTGGTGTGAAGGAGG 328
||||||| || ||||||| || |||| |||||| ||||||| ||||||||||||||||||
Sbjct 278 TGATGGAAGACACAAAACTACTTGAGCAGATGGGGAATGATATGCTTGGTGTGAAGGAGG 337
Query 329 ACACAAAACTATTTGAGGAGATGATGGAGTCGACAAAAGATAGGATGATCCGTTCGGTGG 388
||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 338 ACACAAATCTATTTGAAGAGATGATGGAGTCGGCAAAAAATAGGATGATCCGTTCAGTGG 397
Query 389 AGGAACTCTTAGGAGGAGAATTTCC-TAATCGTGGATCTTACGAGAACGTCCACACTTGG 447
||||||| |||||||||||| || ||||| ||| |||||||| |||||||||||||||
Sbjct 398 AGGAACTTTTAGGAGGAGAA-AGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTGG 456
Query 448 CTCAGTAGCGTTCTTACTAGTTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTAT 507
|||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 457 CTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTAT 516
Query 508 AAACGCCGTGTCGAGCCAAAGCTTGAAGACCTCATTTCTAGGGCAAGAATAGCTTTGGCT 567
||||| || ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 517 AAACGTCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAGTAGCTTTGGCA 576
Query 568 CTCTTTATCTCCATTTCACCGAGAGACAACACCGAACTTATCTCGGTGATTCCCAATAGC 627
| ||||| |||||||| ||||||||| |||||||||||| |||||| || ||||| ||
Sbjct 577 ATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATGGC 636
Query 628 CCTTCTTGGTTATTCC-ATGTTGACAAGAAA-GATCTATATCTCAATGCTGAGGCTCTAA 685
|| ||||||||| ||| | |||||||| ||| | ||||||||||||| |||||| |||||
Sbjct 637 CCGTCTTGGTTA-TCCAACGTTGACAAAAAATG-TCTATATCTCAATCCTGAGGTTCTAA 694
Query 686 AGAAGATTGCTGATGTTGTGGTCGCGAAGGATGGGACCGGAAAGTACAGCACAGTGAATG 745
|||||| ||| |||||||||||||| |||||||||| |||| | |||| |||||||||||
Sbjct 695 AGAAGAATGCCGATGTTGTGGTCGCAAAGGATGGGAGCGGACATTACAACACAGTGAATG 754
Query 746 CGGCCATTGCAGCGGCACCTCAACACAGCCAAAAGAGATTCGTCATCTATATAAAGACAG 805
|||||||||||||||||||| || ||| || ||||||||| ||||||||||||||||| |
Sbjct 755 CGGCCATTGCAGCGGCACCTGAATACAACCGAAAGAGATTTGTCATCTATATAAAGACTG 814
Query 806 GCATTTATGATGAAATCGT-CGTCATTGAGAATACGAAACCCAATTTAACTCTTATAGGT 864
|| | |||||||||||||| || ||||| || ||||||| ||||||||||||| || |||
Sbjct 815 GCGTCTATGATGAAATCGTCCG-CATTGGGATTACGAAAACCAATTTAACTCTCATCGGT 873
Query 865 GATGGTCAAGATTTAACCATCATCACGAGCAATTTAAG-TGCTAGCAATGTTAGAAGAAC 923
||||||||||||| ||||||||||||| |||||||||| || || | || |||| |||
Sbjct 874 GATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGTTG-TAACGTTGGTAGATCAAC 932
Query 924 GTTCAACACCGCAACTGTTGCTTCTAATGGTAATGGATTCATCGGAGTAGACATGTGCTT 983
|||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 933 GTTCTACACCGCAACTGTTGCTTCTAATGGTGATGGTTTCATCGGAATAGACATGTGCTT 992
Query 984 CCGAAACACGGCCGGGCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATAT 1043
| | ||||||||||| ||| |||| |||| ||| ||||||||||||||||||||||||||
Sbjct 993 CAGGAACACGGCCGGACCGACAAAGGGACAAGCCGTTGCCCTCCGTGTGAGTGGTGATAT 1052
Query 1044 GTCCGTCATTTATAGATGCCGTGTCGAGGGATATCAGGATGCCTTGTATCCTCAC-AGTG 1102
|||||||||||| |||| ||| ||||||| ||||||||| | |||||||||||| | |
Sbjct 1053 GTCCGTCATTTACCGATGTCGTATCGAGGGGTATCAGGATACGTTGTATCCTCACCAAT- 1111
Query 1103 ACCGCCAGTTTTATAGAGAGTGCTTTATTACCGGCACTGTAGATTTCATTTGTGGGAACG 1162
||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || |
Sbjct 1112 ACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTATCTGTGGAAAGG 1171
Query 1163 CGGTGGCGGTCTTTCAATTCTGCCAGATTGTAGCAAGACAACCTAAGATGGGGCAGAGCA 1222
| ||||| ||||| ||||| ||||| ||||||||||||||||| | || |||||||||||
Sbjct 1172 CCGTGGCTGTCTTCCAATTTTGCCAAATTGTAGCAAGACAACCGAGGAGGGGGCAGAGCA 1231
Query 1223 ATGTCATAACCGCTCAGTCACGCG 1246
|||| |||||||||||||||||||
Sbjct 1232 ATGTGATAACCGCTCAGTCACGCG 1255
Score = 257 bits (139), Expect = 2e-67
Identities = 216/253 (85%), Gaps = 6/253 (2%)
Strand=Plus/Plus
Query 1348 TGGAGGATA-TTTTCAACAGTCGCAGTTATGCAGTCTTTCATCGGTGATTTAGTTGATCC 1406
||||||| | | ||||||||| | ||| | || ||||| ||||||||||||||||||||
Sbjct 1267 TGGAGGA-AGTATTCAACAGTTGTGGTTCTACAATCTTTTATCGGTGATTTAGTTGATCC 1325
Query 1407 CGCTGGCTGGACTCCTTGGGAAGGAGAAACTGGTTTGTCAACTCTCCACTACCGCGAATA 1466
||| |||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||
Sbjct 1326 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTATCAACTCTCTACTACGGCGAATA 1385
Query 1467 TCAAAACAGGGGTCCAGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGCTTTAAAGT 1526
|||||||| ||| ||||||||||||||||||| |||||| |||||| |||| |||| |||
Sbjct 1386 TCAAAACATGGGCCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGGTTTAGAGT 1445
Query 1527 TATGAAAGATCCTAAAC-AGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAA 1584
| | | |||||||| | | || || |||||||||| ||| ||||| ||||||||||||
Sbjct 1446 TCTTACGGATCCTAA-CGAAGCCGCAAAATTCACTGTTAGC-AAGCTATTAGATGGAGAA 1503
Query 1585 ACTTGGTTGAAAG 1597
| ||||||||||
Sbjct 1504 TCGTGGTTGAAAG 1516
> Ahg914199 jgi|Araly1|914199|Al_scaffold_0001_4453
Length=1605
Score = 957 bits (518), Expect = 0.0
Identities = 739/843 (88%), Gaps = 25/843 (3%)
Strand=Plus/Plus
Query 112 GTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACT-TTTTGTTGGAGCTTAA 170
||| |||||| ||| ||| |||||||||||||||||||| | ||||||||||||| ||
Sbjct 10 GTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAA-TCTTTTGTTGGAGCTCAA 65
Query 171 GGCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGA 229
| |||| || ||||||||||||||||| ||| || ||||||||||||||||| ||||||
Sbjct 66 -GAGGGTATCCTCGTCACTCTCGGAGATGAGATGTTGTGACTTATTGATCATCATTTTGA 124
Query 230 AGAATTCCGTACGGAGGATCGACATGGTTATGATTGGTGTGATGGATGATACAAAACAAC 289
|||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| ||
Sbjct 125 AGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGATGGAAGACACAAAACTAC 184
Query 290 ATGAGGAGATGGAGAATGATTTGCTTGGTGTGAAGGAGGACACAAAACTATTTGAGGAGA 349
|||||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 185 TTGAGGAAATGGAGAATGATATGCTTGGTGTGAAGGAGGACACAAATCTATTTGAAGAGA 244
Query 350 TGATGGAGTCGA-CAAAAGATAGGATGATCCGTTCGGTGGAGGAACTCTTAGGAGGAGAA 408
|||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 245 TGATGGAGTC-AGCAAAAGATAGGATGATCCGTTCAGTGGAAGAACTCTTAGGAGGAGAA 303
Query 409 TTTCC-TAATCGTGGATCTTACGAGAACGTCCACACTTGGCTCAGTAGCGTTCTTACTAG 467
|| ||||| |||||||||||| ||| ||||||||||||| ||| |||||||||||||
Sbjct 304 -AGCCTTAATCTTGGATCTTACGAAAACATCCACACTTGGCTTAGTGGCGTTCTTACTAG 362
Query 468 TTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGCCGTGTCGAGCCAAA 527
||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |
Sbjct 363 CTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTATAAACGTCGGGTCGAGCCAGA 422
Query 528 GCTTGAAGACC-TCATTTCTAGGGCAAGAATAGCTTTGGCTCTCTTTATCTCCATTTCAC 586
||||||||||| | | ||||| ||||||| |||||||||| | |||||||||| ||| |
Sbjct 423 GCTTGAAGACCTTTA-TTCTAAGGCAAGAGTAGCTTTGGCAATTTTTATCTCCACTTCTC 481
Query 587 CGAGAGACAACACCGAACTTATCTCGGTGATTCCCAATAGCCCTTCTTGGTTATTCC-AT 645
|||||||| |||||||||||| |||||| |||||||| |||| ||||||||| ||| |
Sbjct 482 CGAGAGACGACACCGAACTTAAGTCGGTGGTTCCCAATGGCCCGTCTTGGTTA-TCCAAC 540
Query 646 GTTGACAAGAAAGATCTATATCTCAATGCTGAGGCTCTAAAGAAGATTGCTGATGTTGTG 705
|||||||||||| |||||||||| ||| |||||| ||||||||||||||| ||| |||||
Sbjct 541 GTTGACAAGAAATATCTATATCTTAATCCTGAGGTTCTAAAGAAGATTGCCGATTTTGTG 600
Query 706 GTCGCGAAGGATGGGACCGGAAAGTACAGCACAGTGAATGCGGCCATTGCAGCGGCACCT 765
||||| || ||||||| |||||| |||| |||||||||||||||||||||||||||||||
Sbjct 601 GTCGCAAAAGATGGGAGCGGAAATTACAACACAGTGAATGCGGCCATTGCAGCGGCACCT 660
Query 766 CAACACAGCCA-AAAGAGATTCGTCATCTATATAAAGACAGGCATTTATGATGAAATCGT 824
||||| | | ||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 661 GAACACGGT-AGAAAGAGATTCGTCATTTATATAAAGACAGGCGTCTATGATGAAATCGT 719
Query 825 C-GTCATTGAGAATACGAAACCCAATTTAACTCTTATAGGTGATGGTCAAGATTTAACCA 883
| | ||||| || || |||| ||||||||||||| || |||||||||||||||| |||||
Sbjct 720 CCG-CATTGGGAGTATGAAAACCAATTTAACTCTCATCGGTGATGGTCAAGATTCAACCA 778
Query 884 TCATCACGAGCAATTTAAG-TGCTAGCAATGTTAGAAG-AACGTTC-AACACCGCAACTG 940
|||||||| |||||||||| || || | ||| || || ||||||| || ||||||||||
Sbjct 779 TCATCACGGGCAATTTAAGCTG-TAACGATGGTA-AATCAACGTTCCAA-ACCGCAACTG 835
Query 941 TTG 943
|||
Sbjct 836 TTG 838
Score = 617 bits (334), Expect = 6e-176
Identities = 561/669 (84%), Gaps = 22/669 (3%)
Strand=Plus/Plus
Query 943 GCTTCTAATGGTAATGGATTCATCGGAGTAGACATGTGCTTCCGAAACACGGCCGGGCCG 1002
|||||||||||| |||| ||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 913 GCTTCTAATGGTGATGGCTTCATCGGAATAGACATGTGCTTCCGGAACACGGCCGGACCG 972
Query 1003 GCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTCATTTATAGATGC 1062
||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 973 GCAAAGGGACAAGCTGTTGCCCTCCGTGTGAGTGGTGATATATCCGTTATTTACCGATGC 1032
Query 1063 CGTGTCGAGGGATATCAGGATGCCTTGTATCCTCACAGTGACCGCCAGTTTTATAGAGAG 1122
||| ||||||| ||||||||| | |||||||||||||| ||||||| |||||||| |||
Sbjct 1033 CGTATCGAGGGGTATCAGGATACGTTGTATCCTCACAGACACCGCCAATTTTATAGGGAG 1092
Query 1123 TGCTTTATTACCGGCACTGTAGATTTCATTTGTGGGAACGCGGTGGCGGTCTTTCAATTC 1182
| |||||||||||||||||||||||| || ||||| ||||| | ||| ||||| ||||||
Sbjct 1093 TTCTTTATTACCGGCACTGTAGATTTTATCTGTGGAAACGCCGCGGCCGTCTTCCAATTC 1152
Query 1183 TGCCAGATTGTAGCAAGACAACCTAAGATGGGGCAGAGCAATGTCATAACCGCTCAGTCA 1242
||||| ||||||||||||||||| | || ||||||||||||||| |||||||||||||||
Sbjct 1153 TGCCAAATTGTAGCAAGACAACCGAGGAAGGGGCAGAGCAATGTGATAACCGCTCAGTCA 1212
Query 1243 CGCGCATTTAAGGAC-ATTTACTCGGGCTTCACGATTCAAAAATGCAACATTACTGCAAG 1301
|||| | | ||||| | ||||||||||| | |||||||||||||| || ||| ||||
Sbjct 1213 CGCGAAAGTGAGGACGACA-ACTCGGGCTTCTCCATTCAAAAATGCAATATCACTACAAG 1271
Query 1302 CTCG-GATCTAGA-CACG--A---CAACCGTTAAAACGTATCTTGGAAGACCTTGGAGGA 1354
|| |||||||| | | | |||| || || |||| | |||| | || |||| ||
Sbjct 1272 -TCCTGATCTAGATCTGGTTAAAGCAACTGTGAAGACGTTTTTTGGTCGTCCATGGAAGA 1330
Query 1355 TATT-TTCAACAGTCGC-AGTTATGCAGTCTTTCATCGGTGATTTAGTTGATCCCGCTGG 1412
| | ||||||||| | | || | || ||||| ||||||||||||||||||||||| ||
Sbjct 1331 -AGTATTCAACAGTTGTGA-TTCTACAATCTTTTATCGGTGATTTAGTTGATCCCGCAGG 1388
Query 1413 CTGGACTCCTTGGGAAGGAGA-AACTGGTTTGTCAACTCTCCACTACCGCGAATATCAAA 1471
||||||||||||||||||| | ||||||| | ||||||||| ||||| ||||||||||||
Sbjct 1389 CTGGACTCCTTGGGAAGGA-ACAACTGGTCTATCAACTCTCTACTACGGCGAATATCAAA 1447
Query 1472 ACAGGGGTCCAGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTCAGGCTTTAAAGTTATGA 1531
||| ||||||||||||||||||||||| |||||| |||||| ||| |||| |||| | |
Sbjct 1448 ACATGGGTCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGAGAGGGTTTAGAGTTCTTA 1507
Query 1532 AAGATCCTAAAC-AGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAAA-CTT 1588
|||||||| | |||| || |||| ||||| ||| ||||| ||||||||| ||| | |
Sbjct 1508 CGGATCCTAA-CGAGGCCGCAAAATTAACTGTTAGC-AAGCTATTAGATGGA-AAATCGT 1564
Query 1589 GGTTGAAAG 1597
|| ||||||
Sbjct 1565 GGCTGAAAG 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5