BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11600.1
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471298 jgi|Araly1|471298|fgenesh2_kg.1__1252__AT1G11600.1 2784 0.0
> Ahg471298 jgi|Araly1|471298|fgenesh2_kg.1__1252__AT1G11600.1
Length=1748
Score = 2784 bits (1507), Expect = 0.0
Identities = 1668/1747 (95%), Gaps = 6/1747 (0%)
Strand=Plus/Plus
Query 26 CTAACATTCTTCTTCACTTATCTCCCA--TCT-T-TCTCTCTTC-AATAATAATAAACAT 80
|||||||||||||| | |||||||||| ||| | ||||||||| ||| |||| ||||||
Sbjct 1 CTAACATTCTTCTTTATTTATCTCCCATCTCTCTCTCTCTCTTCAAATCATAACAAACAT 60
Query 81 GGATCTCACCGACGTAATCATATTCTTGTTCGCTCTCTATTTCATCAACCTATGGTGGCG 140
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATCTTACCGACGTTATCATATTCTTGTTCGCTCTCTATTTCATCAACCTATGGTGGCG 120
Query 141 CCGGTACTTTTCCGCCGGAAGCAGCCAGTGTAGCTTGAACATTCCACCGGGACCAAAAGG 200
|||||||| ||| |||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 121 CCGGTACTCTTCAGCCGGAAGCAGCCAGTGTCGCTTGAACATCCCACCGGGGCCAAAAGG 180
Query 201 ATGGCCACTAGTCGGAAACCTACTCCAAGTCATATTCCAACGTCGCCATTTCGTCTTCTT 260
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 181 ATGGCCACTAGTCGGAAACCTACTCCAAGTCATACTCCAACGTCGCCATTTCGTCTTCCT 240
Query 261 AATGCGTGACCTACGTAAAAAGTATGGTCCAATATTCACCATGCAGATGGGACAACGTAC 320
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 AATGCGTGGCCTACGTAAAAAGTATGGTCCAATATTCACCATGCAAATGGGACAACGTAC 300
Query 321 GATGATTATCATCACGGACGAAAAACTCATCCACGAGGCACTAGTCCAACGCGGCCCTAC 380
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 GATGATTATTATCACGGACGAAAAACTCATCCACGAGGCACTAGTCCAACGCGGCCCCAC 360
Query 381 ATTCGCTTCCCGGCCTCCGGACTCGCCGATCCGGCTCATGTTTAGTGTTGGGAAATGCGC 440
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 ATTCGCTTCCCGGCCTCCTGACTCGCCGATCCGGCTCATGTTTAGTGTCGGGAAATGCGC 420
Query 441 TATAAACTCGGCGGAGTACGGATCTTTGTGGAGGACTCTGAGGAGGAACTTTGTGACAGA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATAAACTCGGCGGAGTACGGATCTTTGTGGAGGACTCTGAGGAGGAACTTTGTGACAGA 480
Query 501 GCTAGTGACCGCGCCGAGAGTGAAGCAGTGCTCGTGGATAAGGAGTTGGGCTATGCAGAA 560
||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 481 GCTAGTGACGGCGCCCAGAGTGAAGCAGTGCTCGTGGATTCGGACTTGGGCTATGCAGAA 540
Query 561 TCATATGAAGAGGATTAAAACGGAGAATGTTGAGAAAGGTTTCGTGGAGGTTATGAGCCA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCATATGAAGAGGATTAAAACGGAGAATGTTGAGAAAGGTTTCGTGGAGGTTATGAGCCA 600
Query 621 ATGTAGGCTAACGATTTGTAGTATCTTGATCTGTCTTTGTTTCGGTGCCAAGATCAGCGA 680
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGTAGGCTAACGATTTGTAGCGTCTTGATCTGTCTTTGTTTCGGTGCCAAGATCAGCGA 660
Query 681 GGAAAAGATTAAGAACATTGAGAATGTTCTTAAGGACGTTATGCTTATAACTTCTCCGAC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAAAAGATTAAGAACATTGAGAATGTTCTTAAGGACGTTATGCTTATAACTTCTCCGAC 720
Query 741 GTTACCTGACTTTTTGCCGGTTTTCACTCCGTTGTTTCGGCGTCAAGTTAGAGAAGCTAG 800
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 721 GTTACCTGACTTTTTGCCGGTTTTTACTCCGTTGTTTCGGCGTCAAGTAAGAGAAGCGAG 780
Query 801 AGAGCTGAGGAAGACGCAGCTCGAGTGTCTCGTGCCGTTGATAAGAAACCGTCGTAAGTT 860
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 781 AGAGCTGAGGAAGACGCAGCTCGAGTGTCTAGTGCCATTGATAAGAAACCGTCGTAAGTT 840
Query 861 CGTTGATGCAAAGGAGAATCCTAACGAAGAGATGGTTAGTCCGATTGGTGCAGCTTATGT 920
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGTTGATGCAAAGGAGAGTCCTAACGAAGAGATGGTTAGTCCGATTGGTGCAGCTTATGT 900
Query 921 GGATTCTTTGTTTCGTTTGAACTTGATCGAGAGAGGTGGTGAGCTTGGAGATGAAGAGAT 980
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 901 GGATTCTTTGTTTGGTTTGAACCTGATCGAGAGAGGTGGTGAGCTTGGAGATGAAGAGAT 960
Query 981 TGTGACTTTGTGCTCGGAGATTGTCTCTGCCGGTACGGACACGAGTGCAACGACGCTTGA 1040
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 961 AGTGACGTTGTGTTCGGAGATTGTCTCGGCCGGTACGGACACGAGTGCAACGACGCTAGA 1020
Query 1041 ATGGGCGTTATTTCATCTAGTGACTGACCAAAACATTCAAGAGAAGTTATATGAGGAAGT 1100
|||||| ||| ||||||||||||| ||||||| ||||||||||||| |||| ||||||||
Sbjct 1021 ATGGGCTTTACTTCATCTAGTGACCGACCAAAGCATTCAAGAGAAGCTATACGAGGAAGT 1080
Query 1101 TGTTGGAGTTGTTGGCAAAAACGGCGTCGTTGAAGAGGATGACGTGGCGAAAATGCCTTA 1160
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1081 TGTTGGAGTTGTTGGCAAAAACGGCGTCGTTGAAGAAGATGACGTGGCGAAAATGCCCTA 1140
Query 1161 TTTAGAAGCCATCGTGAAAGAGACTCTCCGACGACATCCTCCGGGACATTTTCTTCTCTC 1220
||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1141 TTTGGAAGCCATTGTGAAAGAGACTCTCCGACGACATCCTCCTGGTCATTTTCTTCTCTC 1200
Query 1221 TCACGCCGCCGTGAAAGACACGGAGCTAGGAGGGTATGATATTCCGGCAGGGGCGTATGT 1280
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1201 TCACGCCGCCGTGAAAGACACGGAGCTAGGAGGGTACGATATTCCGGCAGGGGCATATGT 1260
Query 1281 GGAAATTTACACTGCTTGGGTTACTGAGAACCCGGATATTTGGTCGGATCCTGGTAAGTT 1340
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1261 GGAAATTTACACTGCTTGGGTTACTGAGAACCCGGAGATTTGGTCGGATCCTGGTAAGTT 1320
Query 1341 TCGACCCGAGAGGTTTTTAACCGGTGGGGACGGGGTTGATGCTGACTGGACGGGGACACG 1400
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1321 TCGACCCGAGAGGTTTTTAACCGGTGGGGACGGTGTTGATGCTGACTGGACCGGGACACG 1380
Query 1401 TGGTGTTACAATGTTGCCTTTTGGTGCGGGTCGTAGGATCTGCCCGGCTTGGTCTTTAGG 1460
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1381 TGGCGTTACAATGTTGCCTTTTGGTGCGGGTCGTAGGATCTGCCCGGCTTGGTCTTTGGG 1440
Query 1461 GATTCTGCACATCAACTTGATGCTTGCAAGGATGATCCATTCGTTTAAATGGATCCCGGT 1520
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 GATTCTACACATCAACTTGATGCTTGCTAGGATGATCCATTCGTTTAAATGGATCCCGGT 1500
Query 1521 TCCGGATTCTCCACCCGACCCGACTGAGACGTACGCCTTCACGGTCGTTATGAAAAATTC 1580
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1501 TCCGGATTCTCCACCCGACCCGACTGAGACTTACGCCTTCACGGTGGTGATGAAAAATTC 1560
Query 1581 TCTCAAAGCGCAAATCAGGTCAAGGACCTAACGGATATGTTTAGTTTTTGTAAGCGTGTG 1640
||||||||| ||||||| ||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1561 TCTCAAAGCCCAAATCATGTCAAGGACTTAATGGATATGTTTAGTTTTTGTATGCGTGTG 1620
Query 1641 GGGTAATTAAAAGTTATAATTCCTTAGTACGTCACATTAATCTTTGCTATTTTTAATGTT 1700
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1621 GGGTAATTAAAAGTTATAATTCCTTAGTACGTTACATTAATCTTTGCTATTTTTAATGTT 1680
Query 1701 GTTTATGT-CTATCTTTATCTATTCTCAAGGAGTGTAAAATATATATAATCATATGCAGT 1759
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1681 GTTTATGTGCTATCTTTATCTATTTTCAAGGAGTGTAAAATATATATAATCATATGCTGT 1740
Query 1760 TTCTGTT 1766
||| |||
Sbjct 1741 TTCGGTT 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66467477525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5