BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11608.1

Length=1240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919984 jgi|Araly1|919984|scaffold_101265.1                        176    3e-43


> Ahg919984 jgi|Araly1|919984|scaffold_101265.1
Length=547

 Score =  176 bits (95),  Expect = 3e-43
 Identities = 114/123 (93%), Gaps = 2/123 (2%)
 Strand=Plus/Plus

Query  263  TCTTGTGTCGGTATCGATTTCGACGAACTCGAAAACCCTTGTTTGAATTTGCAGGTTTTT  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  159  TCTTGTGTCGGTATCGATTTCGACGAACTCGAAAACCCTTGTTTGAATTTGCAGGCTTTT  218

Query  323  CAACCAATTTCGACATTAAAT-TGTTTGGTACAGAACATGTATCATTGTGATGATTTATT  381
            ||||||||||| || | |||| | || |||||||||||||||||||||||||| | ||||
Sbjct  219  CAACCAATTTCAACCTCAAATATATT-GGTACAGAACATGTATCATTGTGATGGTATATT  277

Query  382  GTT  384
            |||
Sbjct  278  GTT  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46319344155


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5