BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11620.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334454 jgi|Araly1|334454|fgenesh1_pg.C_scaffold_1001019 1567 0.0
> Ahg334454 jgi|Araly1|334454|fgenesh1_pg.C_scaffold_1001019
Length=1284
Score = 1567 bits (848), Expect = 0.0
Identities = 1015/1092 (93%), Gaps = 25/1092 (2%)
Strand=Plus/Plus
Query 1 ATGGCTACAATGGATCTTTCGTCTGATTTGGTAGAGGAGATACTCTCACGGGTTCCAGCG 60
|||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 ATGGCTACTATGGAGCTTTCGTCTGATTTGGTAGAGGAGATACTATCACGGATTCCAGCT 60
Query 61 AGATCTCTTGTACGATTGAGATCCACATGCAAGCAGTGGGAAGCCCTAATCGCAGAGCCG 120
||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||
Sbjct 61 AGATCTCTTGTACGATTGAAATCCACATGCAAGCAGTGGAAAACCCTAATCACAGAGCCG 120
Query 121 AGATTCGTCAACAAGCACTTGTCTCACATGCGTTACCGTGAGCAACAATTCACAGTCTTT 180
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGATTCGTGAACAAGCACTTGTCTCACATGCGTTGCCGTGAGCAACAATTCACAGTCTTT 180
Query 181 AACAACGAACACATAGTTTCTCCTTTGTTCGGTTCCACAACTTCTTATGTAGGTATCGAT 240
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 181 AACAACGAACACATAGTTTCTCCTTTATTCGGTTCCACAATTTCTTATGTAGGTATCGAT 240
Query 241 TTCAACAAACCAGAAAATTGTGGTGTGAAATTGCCTTTTCCAATAGCTCTT-TCACCAGC 299
||||||||||||||||| |||||| |||| ||||| |||||||||||| || ||||| ||
Sbjct 241 TTCAACAAACCAGAAAAATGTGGTATGAATTTGCCGTTTCCAATAGCT-TTCTCACCCGC 299
Query 300 GATCAATATATCTCATTGTGACGGTCTATTGCTATACGTCACTAAAAGTATGCTTTTGGT 359
|| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAACAATATTTCTCATTGTGATGGTCTATTGCTATACGTCACTAAAAGTATGCTTTTGGT 359
Query 360 TGCGAATCCGTTGTTGAGTCAAAAGAGATGGATTAAATGTAGCGAAGGGTTTGACCATTC 419
||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 360 TGCGAATCCGTTGTTGAATCAAAAGAGATGGATCAAATGTAGCCAAGGATTTGACCATTC 419
Query 420 CATGGACGCGTATGGTCTTGGATACCTTTTTAACCAATCATCAGGTTTTTATGATTACAA 479
|||||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 420 CATGGATGCGTATGGTCTTGGATACATTTTTAACCAATTATCAGGTTCTTATGATTACAA 479
Query 480 AGTTGTAA-GATTTCG-T-T-GTG---GAATT-AA-A---A-AT---TCATCAAGGGTAG 523
||| |||| | ||||| | | ||| ||||| || | | || |||||||| || |
Sbjct 480 AGTGGTAACG-TTTCGTTGTGGTGTCAGAATTAAAGATTTATATCCATCATCAAGAGTTG 538
Query 524 AAGTCTACGCATTC-AAGTCTGATTCTTGGAAGGTTGTTGTTGATACAAACTTTGGTGGA 582
|||||||||||||| || |||||||||||||||||||||||||||| |||||||| |||
Sbjct 539 AAGTCTACGCATTCGAA-TCTGATTCTTGGAAGGTTGTTGTTGATAAAAACTTTGATGGG 597
Query 583 TTCGATGGATTGCCATTGTCAAGTGTTTGTTTGCGAGGAACTCCTTATTGGCTAGGTTAC 642
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCGATGGATTTCCATTGTCAAGTGTTTGTTTGCGAGGAACTCCTTATTGGCTAGGTTAC 657
Query 643 AATAAATCTGGTAATGAACTCATGTCGATACAGAGTTTCGATTTCTCAAAAGAGAGATTT 702
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AATAAATATGGTAATCAACTCATGTCGATACAGAGTTTCGATTTCTCAAAAGAGAGATTT 717
Query 703 GAGCCCTTGTTTCTTCCTCCTCAATCCATTGGGTCACGTAATTTGGTAAAGTATATCTCT 762
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGCCCTTGTTTCTTCCTCCTCCATCCATTGGGTCACGTAATTTGGTAAAGTATATCTCT 777
Query 763 TTAGGGATTTTCAGAGGAGATCAACTTTCTTTGTTACTTGAATGCCACGAAACATGTAAG 822
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 TTAGGGATTTTCAGAGGAGATCAACTTTCTTTGTTACTTGAATGCCACGAAACAAGTAAG 837
Query 823 TTACACTTATGGGTGATGAAGAAGCAGCATTGGAGCAGGCTGATGACAGTTGATGTACCT 882
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTACACTTATGGGTGATGAAGCAGCAGCATTGGAGCAGGCTGATGACAGTTGATGTACCT 897
Query 883 CAAG-ATGCGATATATGGAAAATATTTCAGTTCCTTCATTGAGAGAAATGGTAGGCTTGC 941
|| | || |||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 CA-GTATCCGATATATGGTAAATATTTCAGTTCTTTCATTGAGAGAAATGGTAGGCTTGC 956
Query 942 ATTATTGATCAAAAGCAGGAATATTAGCATCTACATTGGGGGAGAGAATCAAGAATTC-A 1000
|||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 957 ATTATTTATCGAAAGCGGGAATATTAGCATCTACATTGGGGGAGAGAATCAAGATTTCGA 1016
Query 1001 AAAGATTTGAATACTTCACTGGTCTTGGTCCCATGCTCAGTGATTGCTGCTATATTCAGA 1060
||| ||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 1017 AAAAATT-GAATACTTCACTGGTCTAGGTCGCACGCTCAGTGATTGCTGCTATATTCAGA 1075
Query 1061 GCTTGCTTCAGA 1072
||||||||||||
Sbjct 1076 GCTTGCTTCAGA 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5