BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11630.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471300 jgi|Araly1|471300|fgenesh2_kg.1__1254__AT1G11630.1 2169 0.0
Ahg475143 jgi|Araly1|475143|fgenesh2_kg.2__273__AT1G61870.1 713 0.0
> Ahg471300 jgi|Araly1|471300|fgenesh2_kg.1__1254__AT1G11630.1
Length=1485
Score = 2169 bits (1174), Expect = 0.0
Identities = 1405/1511 (93%), Gaps = 37/1511 (2%)
Strand=Plus/Plus
Query 7 ATCATGAACCCTAGTAATGGCGTTCCTCTTCCGCATTCGAACATCGGAATTTATACTCCA 66
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1 ATCATGAACCCTAGTAATGGCGTTCCTCTTCCGCATTCGAACATCGGAATCTCTAGTCCA 60
Query 67 GAAAGCGACTCAATTCCGATTG-AAGTCTTCTTCTTCATCTATCTTCACACTAAAATCTC 125
||| | |||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 61 GAACGTGACTCAATTCCGATTGCAA-TCTTCTTCTTCATCTATCGTCACACTAAAATCTC 119
Query 126 TCACTAGCAAGCAGAAGAAGAGCCGAGATACTCTCTCCCTTCTCAAATCCGAGAATAATC 185
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 120 TCACTAGCAAGCAGAAGAAGAGTCGAGCTACTCTCTCCCTTCTCAAATCCGAGAATAATC 179
Query 186 CTG-ATCGAATCCTCGAAATCTGCCGATCCACTTCACTCTCACCTGATTATCACGTCGAC 244
| | |||| ||||||||||| ||||||||| |||| ||| | |||||||||||||| |||
Sbjct 180 C-GAATCGGATCCTCGAAATTTGCCGATCCGCTTCCCTCACGCCTGATTATCACGTGGAC 238
Query 245 CGTATCATCTTCTCCGTTGCGGTGGTGACACTAGCGAGAGAGAAACACTTCGTCGCTGTA 304
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 CGTATCATCTTCTCCGTCGCGGTGGTGACACTAGCGAAAGAGAAACACTTCGTCGCTGTG 298
Query 305 TCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATCCAAAATCCGAGAGTTTCGCA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATCCAAAATCCGAGAGTTTCGCA 358
Query 365 GTCCGTGCCATTATCCTATACGG-CAGAGCGAATATGCTTGATCGATCTATACAAACATT 423
||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 359 GTCCGCGCCATTATCTTATACGGTC-GAGCGAATATGCTTGATCGATCTATACAAACATT 417
Query 424 TCGCAACCTCGAGCAATACGAGATCCCAAGGACGGTGAAGTCTCTAAATGCTCTTCTTTT 483
||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 418 TCGTGACCTCGAGCAATACGAGATCCCGAGGACGGTGAAGTCTTTGAATGCTCTTCTTTT 477
Query 484 CGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTCTACCTCGAAATGCCGAA 543
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 TGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTGTACCTCGAAATGCCGAA 537
Query 544 GATGTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGATTAGAGTCTTGTGTGA 603
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATTTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGATTAGAGTCTTGTGTGA 597
Query 604 ATCAGGTTCAACGAGTTCATCATACTCCATTGTTGCAGAGATGGAGAGGAAATGGATAAA 663
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 ATCAGGTTCAACGAGTTTATCATACTCCATTGTTGCAGAGATGGAGAGGAAATGGGTAAA 657
Query 664 GCCAACAGCTGCTAGCTTTGGTTTAATGATTGATGGTTTTTACAAGGAGGAGAAGTTTGA 723
|||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCCAACAGCTTCAAGTTTTGGGTTAATGATTGATGGTTTTTACAAGGAGGAGAAGTTTGA 717
Query 724 TGAAGTGAGGAAAGTGATGAGAATGATGGATGAATTTGGTGTTCATGTTGGTGTAGCTAC 783
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 TGATGTGAGGAAAGTGATGAGAATGATGGATGAATTTGGTGTTCATGTTGGTGTTGCTAC 777
Query 784 ATACAACATTATGATTCAATGTTTGTGTAAAAGGAAGAAATCTGCAGAAGCAAAGGCGTT 843
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTACAACATTATGATTCAGTGTTTGTGTAAAAGGAAGAAATCTGCAGAAGCAAAGGCGTT 837
Query 844 GATTGATGGGGTTATGTCTTGTAGGATGAGACCAAACTCTGTGACGTATTCGCTTTTGAT 903
||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct 838 GATTGATGGGGTTATGTCTTGTAGGATGAGACCGAATTCGGTGACTTATTCGCTTTTGAT 897
Query 904 TCATGGGTTTTGCAGTGAGGAGAATTTGGATGAAGCTATGAATTTGTTTGAGGTTATGGT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCATGGGTTTTGCAGTGAGGAGAATTTGGATGAAGCTATGAATTTGTTTGAGGTTATGGT 957
Query 964 GTGTAATGGATACAAGCCTGATAGTGAATGTTACTTCACTTTGATACATTGTTTGTGTAA 1023
|| || ||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 GTATAGTGGGTATAAGCCTGATAGTGAATGTTACTTCACTTTGATACATTGCTTGTGTAA 1017
Query 1024 AGGAGGGGACTTTGAGACAGCTTTGATCCTTTGTAGAGAGAGTATGGAGAAGAATTGGGT 1083
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 AGGTGGGGACTTTGAGACAGCTTTGATCCTTTGTAGGGAGAGTATGGAGAAGAATTGGGT 1077
Query 1084 TCCGAGTTTTAGTGTCATGAAGTGGCTTGTTAATGGACTAGCAAGTCGTTCAAAGGTCGA 1143
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1078 TCCGAGTTTTAGTATCATGAAGTGGCTTTTTAATGGACTAGCAAGTCGTTCAAAGGTCGA 1137
Query 1144 TGAAGCAAAGGAGCTCATTGCGGTAGTTAAAGAGAAGTTTACCAGAAATGTGGACTTGTG 1203
|||||||||||| ||||||| | ||| ||||||||||||||||||||||| | |||||
Sbjct 1138 TGAAGCAAAGGAACTCATTGTGCAAGTAAAAGAGAAGTTTACCAGAAATGTTTATTTGTG 1197
Query 1204 GAATGAAGTCGAAGCTGCATTGCCTTTGCCTCAGTGAACAAAGGTACACATAGAAGAAG- 1262
||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||
Sbjct 1198 GAATGAAGTCGAAGCTGCATTGCCT---C---AGTGAACAA-GGTACACATAGAAAAAGG 1250
Query 1263 TCATTCATCTTCGATTTGACATGAGGATTTGAAGTTTTTGAGATTGGTTAGTTTAGCTGA 1322
|||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 1251 TCATTCGTCTTCGATTTGATATGAGGATTTGAAGTTTT-GAGATTGGTTAGTTTAGC--A 1307
Query 1323 AATCATCTGTCAAAATTGAAATGAAAGGGGATATAGTTTGAAGAGAATCTTGTCGTTGAG 1382
|| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1308 ---CA------AA--TTGAAATGAAAGGGGATA--GTTTGAAGAGAATCTTGTCGTTGAG 1354
Query 1383 ATTAAGAAGCTATCTCTC--TAAGGATTGGTGCTGGTGAATTATCAATTTTCTTACTGAA 1440
|||||| |||||| | || |||| |||||||||||||||||||||||||||||||||||
Sbjct 1355 ATTAAGTAGCTATATATCACTAAGAATTGGTGCTGGTGAATTATCAATTTTCTTACTGAA 1414
Query 1441 tttttttGAACATGTTGTATATAAATGGAATG---T--AACATTTTTCAATATATCGGAA 1495
|||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 1415 ATTTTTTAAACATGTTGTATATAAATGGAATGGAATGTAACATTTTTCAATATATCGTAA 1474
Query 1496 ACGATGAGCCT 1506
|||||||||||
Sbjct 1475 ACGATGAGCCT 1485
> Ahg475143 jgi|Araly1|475143|fgenesh2_kg.2__273__AT1G61870.1
Length=1362
Score = 713 bits (386), Expect = 0.0
Identities = 899/1137 (79%), Gaps = 73/1137 (6%)
Strand=Plus/Plus
Query 123 CTCTCACTAGCAAGCAGAAGAAGAGCCGAGATA-CTCTCTCCCTTCTCAAATCCGAGAAT 181
||||||||||||| |||| || ||| || | |||| || |||||||||||||||||
Sbjct 180 CTCTCACTAGCAA--AGAA-AAAAGCAAAG-CAGCTCTTTCTCTTCTCAAATCCGAGAA- 234
Query 182 A-ATCCTGATCGAATCCTCGAAATCTGCCGATCCA-CTTCACTCT-CACCTGATTATCAC 238
| |||| ||||| ||||||||||||||||| | || |||| || | | || |||| ||||
Sbjct 235 AGATCCAGATCGTATCCTCGAAATCTGCCG-TGCAGCTTCTCT-TACTCCAGATTGTCAC 292
Query 239 GTCGACCGTATCATC-TTCTCCGTTGCGGTGGTGACA-CTAG-CGAGAGAGAAACACTTC 295
| || || ||| | ||||||| || || | || | || | ||||| ||||||| |||
Sbjct 293 ATAGATCGAATC-GCTTTCTCCGCCGCCGTCGAGA-ATCTCGCCGAGA-AGAAACATTTC 349
Query 296 GT-CGCTGTATCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATC-CAAAATCCG 353
| |||||||||| | || ||||| || |||||| |||| | || |||| | ||||| |
Sbjct 350 -TCCGCTGTATCGAATCTCCTCGATGGATTCATCGAAAATCGACAAGATCTC-AAATCGG 407
Query 354 AGA-GTTTCGCAGTC-CGTGCCATTATCCTATACG-GCAGAGCGAATATGCTTGATCGA- 409
| | ||||||| | | | || ||| | | || | || ||||||||||||||||| |
Sbjct 408 A-ACGTTTCGCTG-CTCACGCTATTGTTTTGTATGCTCA-AGCGAATATGCTTGATC-AC 463
Query 410 TCTATACA-AACATTTCGCAACCTCGAGCAATACGAGATCCCAAGGACGGTGAAGTCTCT 468
||| || | ||||| | || ||| ||| || ||||| | |||||||||||| |
Sbjct 464 TCTTTA-AGGGTTTTTCGTGATCTTGAGAAATTTGAAATCCCTCGTACGGTGAAGTCTTT 522
Query 469 AAATGCTCTTCT-TTTCGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTCT 527
||| |||||||| ||| ||||||||| | |||||||||||||||||||| || | || |
Sbjct 523 AAACGCTCTTCTCTTT-GCTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTT 581
Query 528 ACCTCGAAATGCCGAAGATGTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGA 587
|| | || ||||| ||||||||||| |||||||||||||| || ||||| ||| | ||||
Sbjct 582 ACATTGAGATGCCTAAGATGTATGGGATTGAACCTGATCTTGAGACTTATAATCGTATGA 641
Query 588 TTAGAGTCTTGTGTGAATCAGGTTCAACGAGTTCATCATACTCCATTGTTGCAGAGATGG 647
| | ||| || |||||||| |||||| ||||||| | |||||||||||||| |||||||
Sbjct 642 TCAAAGTGTTCTGTGAATCCGGTTCAGCGAGTTCGGCGTACTCCATTGTTGCGGAGATGG 701
Query 648 AGAGGAAATGGATAAAGCC-AACAGCTGCTAGCTTTGGTTTAATGATTGATGG-TTTT-T 704
|||||||| |||||||||| || || | ||||||||||||| |||||| ||| |||| |
Sbjct 702 AGAGGAAAGGGATAAAGCCGAATAG-TTCTAGCTTTGGTTTGATGATTTCTGGATTTTAT 760
Query 705 ACAAGGAGGAGAAGTTTGATGAAGTGA-GGAAAGTGAT-GAGAATGATGGATGAAT-TTG 761
| | ||||| ||| ||||||||| | |||||||| | | | |||||| | | || |
Sbjct 761 TC-A-GAGGATAAGAATGATGAAGT-AGGGAAAGTGTTGGTG-ATGATGAAAG-ATCGCG 815
Query 762 GTGTTCATGTTGGTGTAGCTACATACAACATTATGATTCA-ATGTTTGTGTAAAAGGAAG 820
||||| || | ||||| | || || ||||||| |||||| | |||||||||| ||||||
Sbjct 816 GTGTTAATATCGGTGTTTCGACTTATAACATTAGGATTCAGA-GTTTGTGTAAGAGGAAG 874
Query 821 AAATCTGCA-GAAGCAAAGGCGTTGATTGATGGG--GTTATGTCTTGTA-GGATGAGACC 876
|||||| | ||||||||||| ||| |||||||| |||| || || | |||||| |||
Sbjct 875 AAATCT-AAGGAAGCAAAGGCTTTGCTTGATGGGATGTTA--TC-TGCAGGGATGAAACC 930
Query 877 AAACT-CTGTGACGTATTCG-CTTTTGATTCATGGGTTTTGCAGTGAGGA-GAATTTGGA 933
|| | | || || || | | | |||||||| ||||||||||| ||| || | |||| ||
Sbjct 931 GAA-TACGGTTACTTA-TAGCCATTTGATTCGTGGGTTTTGCAATGAAGATG-ATTTCGA 987
Query 934 TGAAGCTATGAATTTGTTTGAGGTTATGGTGTGTA-ATGGATACAAGCCTGATAGTGAAT 992
||||| | ||| |||||| ||||||||||| | | |||| |||||||||||||| |
Sbjct 988 GGAAGCGAAGAAGTTGTTTAAGGTTATGGTGAACAGA-GGATGTAAGCCTGATAGTGAGT 1046
Query 993 GTTACTTCACT-TTGATACATTGTTTGTGTAAAGGAGGGGACTTTGAGACAGCTTTGATC 1051
||||||||||| || ||| ||| ||||| |||||||| ||||||||||| |||||| |
Sbjct 1047 GTTACTTCACTCTT-ATATATTACTTGTGCAAAGGAGGAGACTTTGAGACGGCTTTGGTT 1105
Query 1052 CTTTGTAGAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTGTCATGAAGTGGCTT 1111
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1106 CTTTGTAAAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTCGCTT 1165
Query 1112 GTTAATGGACTAGC-AA-GTCGTTC-AAAGGTCGATGAAGCAAAGGAGCTCATTGCGGTA 1168
||||| |||||||| || | ||| |||| |||| ||||||||||||||||||| || |
Sbjct 1166 GTTAACGGACTAGCTAAAGA--TTCGAAAG-TCGACGAAGCAAAGGAGCTCATTG-GGCA 1221
Query 1169 -GTTAAAGAGAAGTTTACCAGAAATGTGGACTTGTGGAATGAAGTCGAAGCTGCATT 1224
|| ||||||||||| || ||||| || || |||||||||||||||||||| |||||
Sbjct 1222 AGTAAAAGAGAAGTTCACTAGAAACGTCGAGTTGTGGAATGAAGTCGAAGCCGCATT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5