BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11650.2
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471301 jgi|Araly1|471301|fgenesh2_kg.1__1255__AT1G11650.2 2320 0.0
> Ahg471301 jgi|Araly1|471301|fgenesh2_kg.1__1255__AT1G11650.2
Length=1532
Score = 2320 bits (1256), Expect = 0.0
Identities = 1470/1565 (94%), Gaps = 47/1565 (3%)
Strand=Plus/Plus
Query 13 AACAATCTCTCATCTTTAGCATTGTTTTGTTATCTTCTTCTTCATCACAATTTTTCTACG 72
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAATCTCTCCTCTTTAGCTTTGTTTTGTTATCTTCTTCTTCATCACAATTTTTCTACG 60
Query 73 GTCAGAGATTCAAAAGAG-TTCT-T-TCTCTCTATCTTATTCTCCGATCATCATGATGCA 129
||||||||||| |||||| |||| | ||| ||| ||||||||||||||||||||||||||
Sbjct 61 GTCAGAGATTC-AAAGAGTTTCTCTATCT-TCT-TCTTATTCTCCGATCATCATGATGCA 117
Query 130 GCAGCCACCACCCGGAGGTATCCTTCCACATCACGCTCCTCCTCCTTCTGCGCAACAACA 189
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 118 GCAGCCACCACCCGGAGGTATCCTTCCACATCACATTCCTCCTCCTTCTGGGCAACAACA 177
Query 190 GTACGGTTACCAACAA------CCTTACGGGATTGCTGGAGCTGCTCCACCACCACCACA 243
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 178 GTACGGTTACCAACAACCTTCTCCTTACGGGATTGCTGGTGCTGCTCCACCACCACCACA 237
Query 244 GATGTGGAATCCTCAAGCGGCGGCGCCGCCATCAGTTCAGCCTACGACCGCTGACGAGAT 303
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 238 GATGTGGAATCCTCAAGCGGCGGCGCCGCCATCAGCTCAGCCTACGACTGCCGACGAGAT 297
Query 304 CCGGACTCTTTGGATCGGGGACTTACAGTATTGGATGGATGAGAATTTCCTCTACGGTTG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCGGACTCTTTGGATCGGGGACTTACAGTATTGGATGGATGAGAATTTCCTCTACGGTTG 357
Query 364 CTTTGCTCATACCGGAGAGATGGTTTCTGCTAAAGTGATTCGTAACAAGCAAACCGGTCA 423
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 CTTTGCTCATACCGGAGAAATGGTTTCTGCTAAAGTAATTCGTAACAAGCAAACCGGTCA 417
Query 424 AGTTGAAGGATACGGTTTCATTGAATTCGCATCTCATGCTGCTGCTGAAAGAGTTCTACA 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 AGTTGAAGGATACGGTTTCATTGAGTTCGCATCTCATGCTGCTGCTGAAAGAGTTCTACA 477
Query 484 AACATTCAACAACGCTCCTATCCCGAGCTTTCCTGATCAGCTCTTTAGACTGAACTGGGC 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 AACATTCAACAACGCTCCTATCCCGAGCTTTCCTGATCAGCTCTTTAGATTGAACTGGGC 537
Query 544 ATCATTGAGTTCAGGAGATAAACGAGACGATTCACCGGACTACACGATATTTGTCGGTGA 603
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 GTCATTGAGTTCAGGAGATAAACGAGATGATTCACCGGACTACACGATATTTGTCGGTGA 597
Query 604 TCTGGCTGCTGATGTTACGGATTATATCTTACTTGAGACGTTCAGAGCCTCTTATCCGTC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTGGCTGCTGATGTTACGGATTATATCTTACTTGAGACGTTCAGAGCCTCTTATCCGTC 657
Query 664 AGTGAAGGGTGCAAAGGTTGTTATTGACAGAG-TCACTGGACGTACAAAAGGATATGGGT 722
|||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||| |
Sbjct 658 AGTGAAGGGTGCAAAGGTTGTTATTGACAGAGCT-ACTGGGCGTACAAAGGGATATGGTT 716
Query 723 TTGTTAGGTTTTCTGATGAAAGTGAACAGATCCGTGCTATGACGGAGATGAATGGCGTTC 782
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 717 TTGTTAGGTTTTCTGATGAGAGTGAACAGATTCGTGCTATGACGGAGATGAATGGTGTTC 776
Query 783 CTTGTTCTACTAGACCTATGAGAATTGGTCCCGCTGCTAGCAAGAAAGGTGTAACTGGTC 842
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 777 CTTGTTCTACTAGACCTATGAGAATTGGTCCAGCTGCTAGCAAAAAAGGTGTTACTGGTC 836
Query 843 AAAGAGATTCATACCAGAGCTCTGCTGCAGGGGTAACAACTGATAATGATCCAAATAACA 902
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 837 AGAGAGATTCATACCAGAGCTCTGCTGCAGGGGCACCAACTGATAATGATCCAAATAACA 896
Query 903 CAACTGTTTTTGTTGGTGGATTAGATGCA-TCTGTCACGGATGATCATCTGAAGAATGTC 961
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 897 CAACTGTTTTTGTTGGTGGATTAGAT-CAATCTGTCACGGATGATCATCTGAAGAATGTC 955
Query 962 TTTAGCCAATATGGTGAGATTGTGCATGTGAAAATACCCGCTGGAAAGCGCTGTGGATTC 1021
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 956 TTTGGCCAATATGGTGAGATTGTGCATGTGAAAATACCCGCCGGAAAGCGCTGTGGATTC 1015
Query 1022 GTTCAGTTTTCCGAGAAGAGCTGTGCAGAGGAAGCTCTTAGAATGCTGAATGGAGTGCAA 1081
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTTCAATTTTCTGAGAAAAGCTGTGCAGAGGAAGCTCTTAGAATGCTGAATGGAGTGCAA 1075
Query 1082 TTAGGCGGAACAACCGTCAGGCTCTCATGGGGCCGAAGTCCTTCGAACAAACAGTCGGGG 1141
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1076 TTGGGCGGAACAACCGTCAGGCTCTCATGGGGCCGAAGTCCTTCGAACAAACAGTCAGCG 1135
Query 1142 GATCCGAGCCAGTTTTACTACGGTGGGTATGGACAAGGACAGGAGCAGTATGGGTACACG 1201
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1136 GATCCCAGCCAGTTTTATTACGGCGGGTATGGACAAGGACAGGAGCAGTATGGGTACACG 1195
Query 1202 ATGCCTCAAGACCCTAATGCATATTACGGAGGCTACTCTGGTGGAGGA---TACAGCGGT 1258
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1196 ATGCCACAAGACCCTAATGCATATTACGGAGGCTACTCTGGTGGAGGAGGATACAGTGGT 1255
Query 1259 GGTTaccagcagacaccacaggcaggacagcaaccaccacaacagccaccacagcagcaa 1318
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGTTACCAGCAGACACCACAAGCAGGACAGCAACCACCACAACAGCCACCACAGCAGCAA 1315
Query 1319 caaGTCGGGTTTAGCTACTAACCCCGAGAGTATTGCTTGAGTTAATGTCACTCTGCTTGT 1378
|||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 1316 CAAGTCGGGTTTAGCTACTAACTCCGAGAGTATTTCTTGGGTTAATGTCACTCTGCTTGT 1375
Query 1379 TGTTTGCGTACTTTGTTATGAACTTGTTTCTGCGTGCCTTGTTATGAATATTTTCCCAAA 1438
||||||||||||||||||||||||||||||||||||| || | || |||||
Sbjct 1376 TGTTTGCGTACTTTGTTATGAACTTGTTTCTGCGTGC-TT-T---GA-TATTT------- 1422
Query 1439 CACAGTTTATTTGTCTTTGCTTTTCTCTAGGTGTGTGTTGAGTTTTTAACTCTTAATAAT 1498
|| ||||| |||||||||||||||| | || ||||| |||| |||||||
Sbjct 1423 ----GT--------CTTTG-TTTTCTCTAGGTGTGT-T-GAATTTTTCACTCATAATAAT 1467
Query 1499 GTTTCTGCGATGCTTCTGTTTTTAATGTTTTCATCACCTTTTGAAAGAACGTAAGCGTTG 1558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1468 GTTTCTGCGATGCTTCTGTTTTAAATGTTTTCATCACCTTTTGAAAGAACGTAAGCGTTG 1527
Query 1559 ATTAT 1563
|||||
Sbjct 1528 ATTAT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5