BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11655.1

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471303 jgi|Araly1|471303|fgenesh2_kg.1__1257__AT1G11655.1         686    0.0  


> Ahg471303 jgi|Araly1|471303|fgenesh2_kg.1__1257__AT1G11655.1
Length=480

 Score =  686 bits (371),  Expect = 0.0
 Identities = 457/496 (92%), Gaps = 16/496 (3%)
 Strand=Plus/Plus

Query  2    TCTCTCTCTGATCACACTACCTTCTCTTCCAAAAGTCGTCGCCGGGAAAACACAAAAAGA  61
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  1    TCTCTCTCTGATCACACTACCTTCTCTTCCAAAAGTCGTCGTCGGGAAAACACAAAAGGA  60

Query  62   CGAAAATGACCCTATTCAAGAGGCCATGTCTTTACTCAAAGATGGACAAGGAAGATCCAG  121
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  61   CGAAAATGACCCTCTTCAAGAGGCCATGTCCTTACTCAAAGATGGACAAGGAAGATCCAG  120

Query  122  AAGAGGTACTTAGCCGACGAGCCAAGTTCTTGATTTACAAAACACTTCAAGAAGCCGACT  181
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  121  AAGAGGTACTTAGCCGACGAGCCAAGTTCTTGATTTACAAAACACTTCAAGAAGCCGATT  180

Query  182  TGATTTCTCGGCGTGATCCTCATTCGTCGTTTATACGGCTGAAGCTTTATCTGTTGAAGG  241
            || |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  TGGTTTCGCGGCGTGATCCTCATTCGTCGTTTCTACGGCTGAAGCTTTATCTGTTGAAGG  240

Query  242  TCAAGATCGGAAAGAGGTTGGCTAAGCTACGCCGGAGTGTAGTATCCGCCGTTAGATTTG  301
            |||||||||||||||||||| |||| |||||||| |  ||||||||||||||||||||||
Sbjct  241  TCAAGATCGGAAAGAGGTTGACTAATCTACGCCGAACCGTAGTATCCGCCGTTAGATTTG  300

Query  302  GCGGAATTCGAAAGCATTCTCATAATGGCGTGAGAGCGTTGAAGAAGATGTTCCAAGGTG  361
            ||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||| ||||
Sbjct  301  GCGGAATTCGAAAACATTCTCATAACGGCGTAAGAGCGTTGAAGAAGCTGTTCCACGGTG  360

Query  362  GTGCAACAACTGGACTACCTAGGCCTATTTTCTCCCTTGAAGTTTGAAATTTCATTTATT  421
            |||||||||||||||||||||||||||||||| | ||||||||||||  |   ||||   
Sbjct  361  GTGCAACAACTGGACTACCTAGGCCTATTTTCACTCTTGAAGTTTGA--T---ATTT---  412

Query  422  TATATTTCTTGTTTTGTGTAAtttttttttCTTTTGTTTCCGGAGTTTCTTTTGATCTCT  481
                   |||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct  413  -------CTTGTTTTGTGTAATTTTTTTT-CTTTTGTTTCTGGAGTTTCTTTTTATCTCT  464

Query  482  ATTACAAAAGTTTATC  497
             |||||||||||||||
Sbjct  465  TTTACAAAAGTTTATC  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18276527131


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5