BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11670.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471306 jgi|Araly1|471306|fgenesh2_kg.1__1260__AT1G11670.1 2532 0.0
Ahg475142 jgi|Araly1|475142|fgenesh2_kg.2__272__AT1G61890.1 1133 0.0
> Ahg471306 jgi|Araly1|471306|fgenesh2_kg.1__1260__AT1G11670.1
Length=1760
Score = 2532 bits (1371), Expect = 0.0
Identities = 1475/1527 (97%), Gaps = 0/1527 (0%)
Strand=Plus/Plus
Query 89 aaaaaaaTGGGTTCGGAAGCGACCACCGCCGTGAACAACCTTCAGCAACCGTTACTGGAG 148
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 1 AAAAAAATGGGTTCGGAAGCGACCACCGCCGTGGACAACCTGCAGCAACCGTTACTTGAG 60
Query 149 TCAACAAAATCAGAAGCTGACTTCAGGATGGAGAGTGTATTAACGGACACACACTTGTCA 208
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCGAAATCGGAAGCTGACTTCAGGATGGAGAGTGTATTAACGGACACACACTTGTCA 120
Query 209 TATTTTCGGCGGATCTACCTTGCGTCGTTGATCGAGATGAAGTACCTTTTCCACTTGGCG 268
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TATTTCCGGCGGATCTACCTTGCGTCGTTGATAGAGATGAAGTACCTTTTCCACTTGGCA 180
Query 269 GCTCCGGCGATCTTTGTCTACGTCATCAACAATGGCATGTCTATGCTCACTCGTATCTTC 328
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GCTCCGGCGATCTTTGTCTACGTCATCAACAACGGCATGTCTATGCTCACTCGTATCTTC 240
Query 329 GCTGGTCGTTTGGGAAGTATGCAACTCGCTGCCGCTTCTCTAGGAAACAGCGGTTTCAAT 388
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 241 GCTGGTCGTTTGGGAAGTATGCAACTCGCTGCTGCTTCTCTTGGTAACAGCGGTTTCAAT 300
Query 389 ATGTTCACTCTTGGTCTCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTGGGCAA 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTTCACTCTTGGTCTCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTGGGCAA 360
Query 449 GCGCATGGAGCTCATAGATACGACATGCTTGGAGTCTACTTACAAAGATCCACGATTGTT 508
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GCGCATGGAGCTCACAGATACGACATGCTTGGAGTCTATTTACAAAGATCCACGATTGTT 420
Query 509 CTTGTCATAACCGGACTTCCAATGACTTTACTCTTCATCTTCTCAAAACCTCTCCTCATT 568
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGTCATCACCGGACTTCCAATGACTTTACTCTTCATCTTCTCAAAACCTCTCCTCATT 480
Query 569 TCCTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCATCAGTATTCGTCTACGGTATGATC 628
||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||
Sbjct 481 TCCTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCCTCAGTCTTTGTCTACGGAATGATC 540
Query 629 CCAATGATCTTCGCTTACGCCGTCAACTTCCCCATCCAAAAGTTTCTCCAGTCGCAAAGC 688
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 541 CCAATGATCTTCGCTTATGCCGTCAATTTCCCCATCCAAAAGTTCCTCCAGTCGCAAAGC 600
Query 689 ATCGTCACGCCGAGTGCTTATATCTCAGCCGCAACACTAGTCATCCACTTAATCCTCTCT 748
|||||||| || || ||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 601 ATCGTCACACCAAGCGCTTACATCTCAGCCGCAACACTAGTCCTCCATTTAATCCTCTCT 660
Query 749 TGGCTCTCTGTCTTTAAGTTTGGTTGGGGCTTACTTGGTCTCTCCGTTGTTCATAGTCTC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TGGCTCTCTGTCTTTAAGTTTGGTTGGGGCTTACTTGGTCTCTCCGTTGTTCACAGTCTC 720
Query 809 TCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGATAAGTCCAAGATGTCGC 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGATAAGTCCAAGATGTCGC 780
Query 869 CGGACTTGGGATGGTTTTAGTTGGAAAGCTTTTGATGGTCTTTGGGACTTTTTCCAGTTA 928
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 781 CGGACTTGGGATGGTTTTAGCTGGAAAGCTTTTGATGGTCTTTGGGACTTTATCCAGTTA 840
Query 929 TCCGCAGCTTCCGCCGTCATGCTCTGCCTTGAATCTTGGTACTCTCAGATTCTTGTTCTC 988
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 841 TCGGCAGCTTCCGCCGTCATGCTCTGTCTTGAATCTTGGTATTCTCAGATTCTTGTTCTC 900
Query 989 CTCGCCGGACTTCTTAAAGACCCTGAACTTGCTTTGGATTCTCTAGCAATCTGCATGTCA 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCGCCGGACTTCTTAAAGACCCTGAACTTGCTTTGGATTCTCTAGCAATCTGCATGTCA 960
Query 1049 ATCTCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCAGCTGCCAGTGTGAGAGTT 1108
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATATCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCAGCTGCCAGTGTGAGAGTT 1020
Query 1109 AGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTTTCAACCGCGGTAACTACA 1168
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 AGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTTTCAACCGCAGTAACTACA 1080
Query 1169 GGAGTGTCATTTTTACTGTCATTGTTTGAAGCCATCGTGATCCTCTCGTGGCGACATGTC 1228
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 1081 GGAGTGTCATTTTTACTGTCATTGTTTGAAGCCATCGTGATCCTTTCGTGGCGTCACGTC 1140
Query 1229 ATCAGTTACATTTTTACGGATAGTCCAGCGGTTGCGGAAGCCGTCGCCGAGCTCTCTCCT 1288
|||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 1141 ATCAGTTATATTTTTACGGACAGTCCAGCGGTTGCGGAAGCTGTCTCCGAGCTCTCTCCT 1200
Query 1289 TTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCTGTTTTATCTGGTGTGGCCGTT 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCTGTTTTATCTGGTGTGGCCGTT 1260
Query 1349 GGATGTGGATGGCAAGCATATGTAGCTTACGTTAACATTGGATGTTATTACATTGTGGGG 1408
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1261 GGATGTGGATGGCAAGCATATGTAGCGTACGTTAACATTGGATGTTATTACATCGTGGGG 1320
Query 1409 ATTCCGATTGGTTATGTTCTTGGTTTCACCTATGATATGGGAGCTAGGGGAATATGGACA 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATTCCGATTGGTTATGTTCTTGGTTTCACCTATGATATGGGAGCTAGGGGAATATGGACA 1380
Query 1469 GGGATGATTGGTGGCACACTCATGCAAACTATTATCTTGGTCATTGTCACATTCCGAACC 1528
|||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1381 GGGATGATTGGTGGTACACTCATGCAAACTATTATCTTAGTTATTGTCACTTTCCGAACT 1440
Query 1529 GATTGGGATAAAGAGGTGGAGAAGGCTTCGAGACGATTGGACCAGTGGGAGGACACATCT 1588
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1441 GATTGGGATAAAGAGGTGGAGAAGGCTTCGAGACGATTGGACCAGTGGGAAGACACATCT 1500
Query 1589 CCGCTTCTTAAGCAATAAAATAAATAA 1615
|||||||||||||||||||||||||||
Sbjct 1501 CCGCTTCTTAAGCAATAAAATAAATAA 1527
Score = 130 bits (70), Expect = 4e-29
Identities = 86/93 (92%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 1726 TAGTTAGTTATTCAAGAGATATGCGAATCTCTTGATTAATGAA---TTGGAAAATCGATT 1782
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1575 TAGTTAGTTAATCAAGAGATATGCGAATCTCTTGATTAATGAAAAATTGGAAAATCGATA 1634
Query 1783 GTTTTCTGAGGGGGTTAGAGTGAAGAGAAGGAT 1815
||||||||||||| ||||| |||||||||||||
Sbjct 1635 GTTTTCTGAGGGGTTTAGATTGAAGAGAAGGAT 1667
Score = 86.1 bits (46), Expect = 9e-16
Identities = 58/63 (92%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 1905 TTGTTGTAATCGTTTC-TTG--TATGAAATAAATCAGATAATGAAAAATGGGTGTTATGG 1961
|||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 1699 TTGTTGTAATCGTTTCTTTGTATATGAAGT-AATCAGATAATGAAAAATGGGTGTTATGG 1757
Query 1962 TCC 1964
|||
Sbjct 1758 TCC 1760
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1685 TTTTGGTTTTCCCCAAAATGATTTTTAAAT 1714
||||||||||||||||||||||||||||||
Sbjct 1546 TTTTGGTTTTCCCCAAAATGATTTTTAAAT 1575
> Ahg475142 jgi|Araly1|475142|fgenesh2_kg.2__272__AT1G61890.1
Length=1706
Score = 1133 bits (613), Expect = 0.0
Identities = 1172/1438 (82%), Gaps = 54/1438 (4%)
Strand=Plus/Plus
Query 209 TATTTTCGGCGGATCTACCTTGCG-TCGTTGATCGAGATGAAGTACCT-TTTCCACTTGG 266
|||||||| ||||| || || ||| | | |||| |||||||||| || ||| || ||||
Sbjct 113 TATTTTCGCCGGATTTATCTAGCGAT-GGTGATTGAGATGAAGTTTCTCTTT-CATTTGG 170
Query 267 CGGCTCCGGCGATCTTTGTCTACGTCATCAACAATGGCATGTCTATGCTCACTCGTATCT 326
||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||||
Sbjct 171 CGGCTCCGGCGATCTTTGTGTACGTCATCAACAACGGTATGTCGATTCTCACACGTATCT 230
Query 327 TCGCTGGTCGTTTGGGAAGTATGC-AACTCGCTGCCGCTTCTCTAGGAAACAGCGGTTTC 385
|||| |||| | ||||| | | ||||||| |||||||| || |||||||| ||||||
Sbjct 231 TCGCCGGTCACGTCGGAAG-CTTCGAACTCGCCGCCGCTTCACTTGGAAACAGTGGTTTC 289
Query 386 AATATGTTCACTCT-TGGTC-TCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTG 443
||||||||||| || ||| | || ||||||||||||||||||||||||| ||||||||||
Sbjct 290 AATATGTTCAC-CTATGGACTTC-TGCTTGGAATGGGAAGTGCAGTGGAAACATTATGTG 347
Query 444 GGCAAGCGCATGGAGCTCATAGATACGACATGCTTGGAGTCTACTTACAAAGATCCACGA 503
| ||||| |||||||||||| ||||||| ||||| || || ||| | |||||||| || |
Sbjct 348 GTCAAGCACATGGAGCTCATCGATACGAAATGCTCGGTGTTTACCTCCAAAGATCAAC-A 406
Query 504 TT-GTTCTTGTCATAAC-CGGACTTCCAATG--ACTTTACTCTTCATCTTCTCAAAACCT 559
|| ||||| || |||| | | | |||||| || || |||||| |||||||||| ||
Sbjct 407 TTGGTTCTAATCCTAACATGTA-TACCAATGTCAC-TT-CTCTTCCTCTTCTCAAATCCA 463
Query 560 CTCCTCATTTC-CTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCATCAGTATTCGTCTA 618
|||| | ||| ||| || |||||| | || ||| || | || || |||||||||||
Sbjct 464 ATCCTTACTTCACTT-GGAGAGCCAAAACAAGTGGCAACATTAGCTTCCGTATTCGTCTA 522
Query 619 CGGTATGATCCCAATGATCTTCGCTTACGCCGTCAACTTCCCCATCCAAAAGTTTCTCCA 678
||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 523 CGGTATGATCCCAGTGATCTTCGCTTACGCTATCAATTTCCCTATCCAAAAGTTTCTCCA 582
Query 679 GTCGCAAAGCATCGTCACGCCGAGTGCTTATATCTCAGCCGCAACACTAGTCATCCACT- 737
|| |||||||| ||||| || || ||||| || || |||||||| || || ||||| |
Sbjct 583 ATCACAAAGCATTGTCACTCCAAGCGCTTACATATCCGCCGCAACGCTCGTGATCCA-TC 641
Query 738 TAATCCTCTCTTGGCTCTCTGTCTTTAAGT-TTGGTT-GGGGCTTACTTGGTCTCT-CCG 794
| | || || ||| || |||| | | || |||||| || ||| |||| || | |
Sbjct 642 TCGTTCTTTCGTGGATCGCTGTGTAT-CGTCTTGGTTATGGTCTT--TTGG-CTTTATCT 697
Query 795 TTG-TTCATAGTC-TCTCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGAT 852
||| | ||||| | ||||||||||||||||||| | ||||||||| |||| ||||| ||
Sbjct 698 TTGATACATAG-CTTCTCGTGGTGGATCATTGTTGTGGCTCAGATTGTTTATATTAAAAT 756
Query 853 AAGTCCAAGATGTCGCCGGACTTGGGATGGTTTTAGTTGGAAAGCTTTTGATGGTCTTTG 912
||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 757 GAGTCCGAGATGTCGTCGGACTTGGGAAGGTTTTAGTTGGAAAGCTTTTGAAGGTCTTTG 816
Query 913 GGACTTTTTCCAG-TTATCCGCAGCTTCCGCCGTCATGCTCTGCCTTGAATCTTGGTACT 971
||| ||||||| | ||||| || ||||| ||||||||||| |||||||||||||||||||
Sbjct 817 GGATTTTTTCC-GATTATCTGCTGCTTCTGCCGTCATGCTTTGCCTTGAATCTTGGTACT 875
Query 972 CTCAGATTCTTGTTCTCCTCGCCGGACTTCTTAAAGA-CCCTGAACTTGCTTTGGATTCT 1030
|||||||||||||| | ||||| |||||||| || || ||||||||||||||||||||||
Sbjct 876 CTCAGATTCTTGTTTTGCTCGCTGGACTTCTCAA-GAACCCTGAACTTGCTTTGGATTCT 934
Query 1031 CTAGCAATCTGCATGTCAATCTCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCA 1090
|| || |||||||||||||| |||||||| || |||||||| || ||||||||||| |||
Sbjct 935 CTCGCTATCTGCATGTCAATTTCTGCAATCTCATTCATGGTCTCCGTTGGATTCAATGCA 994
Query 1091 GCTGCCAGTGTGAGAGTTAGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTT 1150
||||| ||||||||||| || || || |||| || ||||| || ||| |||| || ||
Sbjct 995 GCTGCAAGTGTGAGAGTAAGCAATGAGCTAGGAGCCGGAAACCCGAGAGCAGCCGCGTTC 1054
Query 1151 TCAACCGCGGTAACTACAGGAGTGTCATTTTTACTGTC-ATTGTTTGAAGCCATCGTGAT 1209
|| || | || || || ||||| ||||| ||||| || ||| |||||||| |||||| |
Sbjct 1055 TCCACGGTAGTGACGACTGGAGTATCATTCTTACTATCGATT-TTTGAAGCTATCGTGGT 1113
Query 1210 CCTCTCGTGGCG-ACATGTCATCAGTTACATTTTTACGGATAGTCCAGCGGTTGCGGAAG 1268
| | || ||||| | |||||||||| || ||||| |||||||| || || || || |
Sbjct 1114 CTTATCATGGCGTA-ATGTCATCAGCTATGCGTTTACAGATAGTCCTGCAGTGGCTGAGG 1172
Query 1269 CCGTCGCCGAGCTCTCTCC-TTTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCT 1327
|||| || || | ||||| ||| |||||||| || || || ||||||||| |||| ||
Sbjct 1173 CCGTTGCGGATTTATCTCCCTTT-TTAGCCATCACAATTGTCCTCAATGGAATTCAGCCA 1231
Query 1328 GTTTTATCTGGTGTGGCCGTTGGATGTGGATGGCAAGCATATGTAGCTTACGTTAACATT 1387
||||| || |||||||| |||||||||||||||||||||| ||| || ||||| ||||||
Sbjct 1232 GTTTTGTCCGGTGTGGCTGTTGGATGTGGATGGCAAGCATTTGTTGCGTACGTAAACATT 1291
Query 1388 GGATGTTATTACATTGTGGGGATTCCGATTGG--TTATGTTCTTGGTTTCACCTATGATA 1445
|||||||| ||| |||||||||| || | ||| || |||||||| ||||| |||||||
Sbjct 1292 GGATGTTACTACGTTGTGGGGATACC-AGTGGGATTC-GTTCTTGGCTTCACTTATGATA 1349
Query 1446 TGGGAGCTAGGGGAATATGGACAGGGATGATTGGTGGCACACTCATGCAAACTATTATCT 1505
||||||||| ||||||||||||||||||||||||||| ||| | || || || || ||||
Sbjct 1350 TGGGAGCTAAGGGAATATGGACAGGGATGATTGGTGGTACATTAATACAGACAATAATCT 1409
Query 1506 TGGTCATTGTCACATTCCGAACCGATTGGGATAAAGAGGTGGAGAAGGCTTCGAG-ACGA 1564
| || |||||||| || ||||| |||||||| |||||||| || || |||||||| | ||
Sbjct 1410 TAGTGATTGTCACTTTACGAACTGATTGGGACAAAGAGGTTGAAAAAGCTTCGAGCA-GA 1468
Query 1565 TTGGACCAGTGGGAGGACA-CA-TCT-CCGCTTCTT-AAGCAATAAAATAAATAAATT 1618
|||||||||||||| || | | | |||||| || |||||||||| ||||| ||||
Sbjct 1469 TTGGACCAGTGGGAAGAGAGCCGTGAGCCGCTT-TTGAAGCAATAAA-TAAATTAATT 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5