BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11680.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471307 jgi|Araly1|471307|fgenesh2_kg.1__1261__AT1G11680.1 2591 0.0
> Ahg471307 jgi|Araly1|471307|fgenesh2_kg.1__1261__AT1G11680.1
Length=1743
Score = 2591 bits (1403), Expect = 0.0
Identities = 1600/1693 (95%), Gaps = 21/1693 (1%)
Strand=Plus/Plus
Query 66 CGACGATTTCTTCTCCATCGTGAGAGCAAATCTCCAG-AGCCGTTTTC-TCTTCTTCTTC 123
||||||||||||||||||||||||||||||||||| | | || ||| |||||||||||
Sbjct 27 CGACGATTTCTTCTCCATCGTGAGAGCAAATCTCC-GTA-TTGTCTTCTTCTTCTTCTTC 84
Query 124 TTCCTCCTCGCGCCGTCTCTGAAACTCCATCATCGTATCAATCAAATTGCTTCCTCCTCC 183
||||||| | || || | | | || | |||||||||||||| ||||||||||||||||
Sbjct 85 TTCCTCC-C-CG-CG-C-C-G--TCT-C-TCATCGTATCAATC-AATTGCTTCCTCCTCC 133
Query 184 AAATTGAAAAACAATGGAATTGGATTCGGAGAACAAATTGTTGAAGACGGGTTTGGTTAT 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AAACTGAAAAACAATGGAATTGGATTCGGAGAACAAATTGTTGAAGACGGGTTTGGTTAT 193
Query 244 AGTGGCGACACTTGTTATAGCCAAACTCATCTTCTCTTTCTTCACTTCTGATTCTAAGAA 303
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 194 AGTGGCTACACTTGTTATAGCCAAACTCATCTTCTCCTTCTTCACTTCTGATTCCAAGAA 253
Query 304 GAAGCGTCTTCCTCCTACTCTTAAAGCTTGGCCTCCATTGGTTGGAAGTCTTATCAAATT 363
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 254 GAAGCGTCTTCCTCCTACTCTTAAAGCTTGGCCTCCTTTGATTGGAAGTCTTATCAAATT 313
Query 364 CTTGAAAGGACCTATTATTATGCTTAGAGAGGAATACCCTAAGCTTGGAAGTGTGTTTAC 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CTTGAAAGGACCTATTGTTATGCTTAGAGAGGAATACCCTAAGCTTGGAAGTGTGTTTAC 373
Query 424 TGTTAATCTTGTTCACAAAAAGATTACTTTTCTTATTGGTCCTGAAGTCTCTGCTCATTT 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGTTAATCTTGTTCACAAGAAGATTACTTTTCTTATTGGTCCTGAAGTCTCTGCTCATTT 433
Query 484 TTTCAAAGCTTCTGAATCTGATCTTAGTCAGCAGGAAGTGTATCAGTTCAATGTCCCTAC 543
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 434 TTTCAAAGCTTCTGAGTCTGATCTTAGTCAGCAGGAAGTGTATCAATTCAATGTGCCTAC 493
Query 544 TTTTGGTCCTGGAGTTGTTTTCGATGTTGATTATTCTGTTCGTCAGGAGCAGTTTCGGTT 603
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 494 TTTTGGTCCTGGAGTTGTTTTCGATGTCGATTATTCTGTTCGTCAGGAGCAGTTTCGGTT 553
Query 604 CTTCACTGAGGCACTTAGAGTTAACAAGTTGAAGGGTTATGTGGATATGATGGTTACTGA 663
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 554 CTTCACTGAGGCACTCAGAGTCAACAAGTTGAAGGGTTATGTGGATATGATGGTTACTGA 613
Query 664 AGCTGAGGATTACTTCTCTAAATGGGGAGAGAGTGGTGAAGTTGATATTAAGGTTGAGCT 723
|||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||
Sbjct 614 AGCTGAGGATTACTTCTCAAAATGGGGTGAGAGTGGTGAAGTTGATCTCAAGGTTGAGCT 673
Query 724 AGAGAGGCTCATCATCTTGACTGCAAGTAGATGTTTACTGGGTCGAGAAGTTCGTGATCA 783
|||| | || |||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 674 AGAGCGTCTTATCATCTTGACTGCAAGTAGATGTCTACTGGGTCGAGAGGTTCGTGACCA 733
Query 784 GCTTTTTGATGATGTCTCTGCTTTGTTCCATGACCTTGACAATGGAATGCTTCCCATCAG 843
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 734 GCTTTTTGATGATGTCTCTGCTTTGTTCCATGACCTTGACAATGGGATGCTTCCCATCAG 793
Query 844 TGTTCTCTTCCCATATCTCCCAATTCCAGCTCACCGCCGTCGTGACCGTGCCCGAGAAAA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TGTTCTCTTCCCATATCTCCCAATTCCAGCTCACCGCCGTCGTGACCGTGCCCGAGAAAA 853
Query 904 GCTTTCGGAGATTTTCGCAAAAATCATTGGGTCGAGAAAACGCTCTGGAAAAACAGAGAA 963
|||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 854 GCTTGCTGAGATTTTCTCAAAAATCATTGGGTCGAGAAAACGCTCTGGAAAATCAGAGAA 913
Query 964 CGACATGCTGCAGTGTTTCATCGAATCAAAGTACAAAGATGGTAGACAGACAACCGAATC 1023
||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 914 CGACATGTTGCAGTGTTTCATCGTATCAAAGTACAAAGACGGTAGACAGACAACCGAGTC 973
Query 1024 TGAAGTCACTGGTTTGCTCATTGCTGCTCTGTTTGCAGGACAACACACGAGCTCTATCAC 1083
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGAAGTCACCGGTTTGCTCATCGCTGCTCTGTTTGCAGGACAACACACGAGCTCTATCAC 1033
Query 1084 TTCCACCTGGACCGGTGCTTATCTGATGCGATACAAAGAGTACTTCTCAGCTGCTCTTGA 1143
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1034 TTCCACCTGGACCGGTGCTTATCTGATGAGATACAAAGAATACTTCTCAGCTGCTCTTGA 1093
Query 1144 TGAGCAGAAGAACCTGATTGCGAAACATGGAGACAAGATCGATCATGATATCTTATCCGA 1203
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1094 TGAGCAGAAGAACCTGATTGCGAAACACGGAGACAAGATCGATCATGATATCTTATCCGA 1153
Query 1204 GATGGATGTTCTCTACCGCTGCATTAAGGAAGCGTTGAGGCTTCACCCTCCACTCATCAT 1263
|||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||
Sbjct 1154 GATGGATGTTCTCTACCGCTGCATAAAGGAAGCTTTGAGGCTTCACCCTCCATTGATCAT 1213
Query 1264 GTTAATGAGAGCCTCGCACAGTGATTTCAGC-GTGACAGCTCGGGATGGAAAAACTTACG 1322
| | ||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 1214 GCTCATGAGAGCCTCACACAGTGATTTCA-CTGTGACAGCTCGGGATGGAAAAACTTATG 1272
Query 1323 ATATCCCAAAGGGTCACATCGTTGCAACCTC-CCCTGCATTTGCCAACCGCTTACCGCAC 1381
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 1273 ATATCCCAAAGGGTCACATCGTTGCGACCTCTCCC-GCATTTGCCAACCGCTTACCGCAC 1331
Query 1382 ATCTTCAAAGACCCCGACACCTACGACCCAGAAAGATTCTCCCCTGGAAGAGAAGAGGAC 1441
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1332 ATCTTCAAAGACCCAGACACCTACGACCCAGAAAGATACTCCCCCGGAAGAGAAGAGGAC 1391
Query 1442 AAAGCCGCAGGGGCATTCTCGTACATTGCATTCGGAGGGGGAAGGCACGGGTGCCTTGGA 1501
||||||||||| |||||||| |||||| |||||||||| || ||||||||||||||||||
Sbjct 1392 AAAGCCGCAGGAGCATTCTCATACATTTCATTCGGAGGAGGTAGGCACGGGTGCCTTGGA 1451
Query 1502 GAGCCGTTTGCTTACCTGCAGATCAAAGCCATATGGAGTCATTTGTTGAGGAACTTCGAG 1561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1452 GAGCCGTTTGCTTACCTGCAGATCAAAGCCATATGGAGTCATTTGTTGAGGAACTTTGAG 1511
Query 1562 CTTGAGCTAGTTTCACCGTTCCCTGAGATTGACTGGAACGCTATGGTGGTTGGAGTTAAA 1621
|||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1512 CTTGAGTTGGTTTCACCGTTCCCTGAGATCGACTGGAACGCTATGGTGGTTGGTGTTAAA 1571
Query 1622 GGCAATGTGATGGTGCGTTACAAGAGGCGCCAGCTTTCTTAAAGACAAGTTTAAGGTTAT 1681
||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1572 GGCAAGGTGATGGTGCGTTACAAGCGGCGCCAGCTTTCTTAAAGACATGTTTAAGGTTAT 1631
Query 1682 TGCAGCtttggatttttctctctggtttctgctttgcttttgtccctctctggttttagt 1741
|||| ||||| |||| | ||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 1632 TGCAACTTTG-ATTTAT-TCTGTGGCTTCTGCTATGCTTTTGTCCCTCTCTGGTTTTAGT 1689
Query 1742 tttgttgttgAAT 1754
|||||||||||||
Sbjct 1690 TTTGTTGTTGAAT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68790982470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5