BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11690.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919994 jgi|Araly1|919994|scaffold_101275.1 1048 0.0
> Ahg919994 jgi|Araly1|919994|scaffold_101275.1
Length=784
Score = 1048 bits (567), Expect = 0.0
Identities = 688/747 (92%), Gaps = 6/747 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCATAACGGAGTGGGACTTGGGATCACTTCGAACGTATTACTCCGTTGAACCT 60
||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 21 ATGGAGAGCATAACGAAGTGGGACTTGGGATCTCTCCGAACGTATTACTCCGTTGAACCT 80
Query 61 AGTGAGAACTTTCAAGAAGACGAGTTTTTAGACTTTAACCTCGTTCCTTGTCTTCAAACG 120
||||||| |||||||||||||||||||||||| ||| |||||||||| | |||||| ||
Sbjct 81 TGTGAGAAGTTTCAAGAAGACGAGTTTTTAGACATTAGCCTCGTTCCTCGACTTCAAGCG 140
Query 121 GAGCTATGGAAGGCTCAAACGAGAATCAAAGAGCTTGAGGCTGAAAAGTTTAAATCAGAG 180
||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 141 GAGTTATGGAAGGCTCAATCGAGAATCAGAGAGCTTGAGGCTGAAAAGTTTGGGTCAGAG 200
Query 181 GAAACTA-TAAGATGTCTCAT-CAGAAACCAAAGAAATGAGAA-AGAAGAAACCACTAAT 237
|||| || ||| |||| || | |||| | ||||||||||| || ||||||||||| | ||
Sbjct 201 GAAAATATTAA-ATGTTTC-TCCAGACATCAAAGAAATGA-AAGAGAAGAAACCAGTGAT 257
Query 238 CCATTTGTTGATTACTTGAAGGAAAAGTTaagcaaagagagggaagaaaagaaaagagtt 297
|||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||
Sbjct 258 CCATTTGTTGATTACTTGAAAGAAAAGTTAAGCAAAAAGAGTGAAGAAATGAAAAGAGTT 317
Query 298 aaagctgagaattctaggttaaagaagaagaTTTTGGATATGGAGTCATCAGTAAATCGG 357
|||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||
Sbjct 318 AAAGCTGAGAATTCTAGGTTAAAGAAGAAGATTTTGGACAGGGAATCATCAGTGAATCGG 377
Query 358 TTGAGAAGAGAAAGAGATACAATGGAGAAGGTGTGCGAGGAACTGGTGACGAGGATCGAT 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 TTGAGAAGAGAAAGAGACACAATGGAGAAGGTGTGCGAGGAACTGGTGACGAGGATCAAT 437
Query 418 GAATTGAAGGTGAATACAAGGAGGGTGTGGGACGAAACGGAGGAGGAGAGGCAGATGTTG 477
||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||
Sbjct 438 GAATTGAAGGTGAATACTAGGAGGATGTGGGACGAAACAGAGGAGGAGAGGCACATGTTA 497
Query 478 CAGATGGCTGAGATGTGGAGGGAGGAAAGGGTTAGGGTTAAGTTCATGGATGCAAAACTT 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CATATGGCTGAGATGTGGAGGGAGGAAAGGGTTAGGGTTAAGTTCATGGATGCAAAACTT 557
Query 538 GCCTTGCAAGAAAAGTATGAGGAGATGAATTTGTTTGTGGTCGAGTTAGAGAAGTGTTTG 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 558 GCCTTGCAAGAAAAGTATGAGGAGATGAATTTGTTTGTGGTTGAGTTAGAGAAGTGTTTG 617
Query 598 GAGACGGCTAGAGAAGTAGGGGGAATTGAGGAGAAGAGGTTAAGACATGGTGAAGGTTTG 657
|||||||| ||||||||||| ||||||||||| |||||| | ||||| ||||||||||||
Sbjct 618 GAGACGGCGAGAGAAGTAGGAGGAATTGAGGATAAGAGGCTGAGACAAGGTGAAGGTTTG 677
Query 658 ATAAAGATGGCGAAATCTATGGAAGTTGTAGACAGTAAGATTGATTTTGAGAGATTTGAG 717
|||||| |||| | ||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 678 ATAAAGTTGGCCAGATCTATGGAAGCTGAAGACAATAAGATTGATTTTGGGAGATTTGAG 737
Query 718 TTTGTGTCTGATGAAGGTAATGTTTAA 744
|||||||||||||||| ||||||||||
Sbjct 738 TTTGTGTCTGATGAAGATAATGTTTAA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5