BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11700.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471309 jgi|Araly1|471309|fgenesh2_kg.1__1263__AT1G11700.1 1092 0.0
Ahg943234 jgi|Araly1|943234|scaffold_603778.1 58.4 9e-08
> Ahg471309 jgi|Araly1|471309|fgenesh2_kg.1__1263__AT1G11700.1
Length=798
Score = 1092 bits (591), Expect = 0.0
Identities = 716/772 (93%), Gaps = 25/772 (3%)
Strand=Plus/Plus
Query 107 GAAGCTTCAATGGCAAGAGGTCGAAAGCTGACGATGAGCCAGAGCGAGAGGTACCTAGGA 166
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 GAAGTTTCAATGGCAAGAGGTCGAAAGCTGACGATGAGCCAGAGCGAGAGGTACCTAGGA 110
Query 167 AGCAGCTATAGTTACGGTGACAGTAACGGAAACTCCGCCACCGACGAATCAGAGCTCACG 226
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 111 AGCAGCTACAGTTACGGTGACAGTAACGGAAACTCCGTCACCGACGAATCAGAGCTCACG 170
Query 227 GAGGAGGACATCTGGTCACACGCCGTCGATCACAGCCCGGAGATGCTGGAATCTCATGGA 286
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 171 GAGGAGGACATCTGGTCACATGCCGTCGATCACAGCCCTGAGATTCTGGAATCTCACGGC 230
Query 287 GCGTGGAACACACGCGATGCTGTGGTGAGGAATGGGCGCGTGGGTGGTGGTTTGTCGCTG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GCGTGGAACACACGCGATGCTGTGGTGAGGAATGGGCGCGTGGGTGGTGGTTTGTCGCTG 290
Query 347 GCGTTTGAGGACGCGTCATCTTCGCCGAGGATCGTGCACCAGATACGTGGCggaggagaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCGTTTGAGGACGCGTCATCTTCGCCGAGGATCGTGCACCAGATACGTGGCGGAGGAGAA 350
Query 407 ggaggaggaggtggtggaggaggaggaagagttgagaggCAGTTGGCGTCGTCGGCTCCG 466
|||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 351 GGAGGAGGCGGTGGAGGGGGAGGAGGAAGAGTTGAGAGGCAGTTGGCATCGTCGGCGCCG 410
Query 467 GTGAACGTGCCGGATTGGAGTAAGATATACCGAGTCAACTCGGTTGAGTCGATACACGAG 526
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 411 GTGAACGTGCCGGATTGGAGTAAGATATACAGAGTCAACTCGGTTGAGTCGATACACGAG 470
Query 527 TCTGATGAAGAGGAGGAGGAAGATTCCGGGATGATGATGCCGCCGCATGAGTACTTGGCG 586
|| || |||||||||||||| |||||| ||||||||||||| |||||||||||| | |||
Sbjct 471 TCGGAGGAAGAGGAGGAGGAGGATTCCAGGATGATGATGCCACCGCATGAGTACCTAGCG 530
Query 587 AAGAGCCAACAGCGACGGAGCAGAAAATCTGGCGGCGGTGGCTCGGTGTTTGAAGGAGTT 646
|||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 531 CAGAGCCAAAAGCGGCGGAGCAGAAAATCTGGTGGCGGTGGCTCGGTGTTCGAAGGAGTT 590
Query 647 GGAAGAACTCTTAAAGGACGAGAATTAAGGCGCGTTCGAGACGCGATTTGGAGCCAAACA 706
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GGAAGAACTCTCAAAGGACGAGAATTAAGGCGCGTTCGAGACGCGATTTGGAGCCAAACA 650
Query 707 GGGTTCTACGGCTAAGTTAGTAATATAAAATTTGAAAGaaaaaaaaaaCAATATAAAACT 766
|||||||||||||||||||||| |||| ||||||||| |||||||||| | |
Sbjct 651 GGGTTCTACGGCTAAGTTAGTATTATATAATTTGAAA-AAAAAAAAAA-A--------C- 699
Query 767 TCAACATAAAAACTTTGGAAAATATTTTGCTTATTTTGTCAGTTTAGAGTTAATTTTGCA 826
| | || | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 700 -C----T------TT-GAAAAATAGTTTGCTTATTTTGTCAGTTTAGAGTTAATTTTGCA 747
Query 827 ACTTTCTTGAATCCCAAGCTTGAGATGTATAAGATTTATATATTG-CTTCCC 877
|||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 748 ACTTTCTTGAATCCCAAGCTTGAGATGTATAAGATTTATA-ATTGGCTTCCC 798
Score = 67.6 bits (36), Expect = 1e-10
Identities = 46/50 (92%), Gaps = 3/50 (6%)
Strand=Plus/Plus
Query 1 ATAGCGAAATCTCTAATTACTTAATCTCTGAATGCT-T--AAGATAATAA 47
|||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1 ATAGCGAAATCTCTAATTACTTAATCTCTGAATGTTGTTTAAGATAATAA 50
> Ahg943234 jgi|Araly1|943234|scaffold_603778.1
Length=552
Score = 58.4 bits (31), Expect = 9e-08
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 633 TGTTTGAAGGAGTTGGAAGAACTCTTAAAGGACGAGA 669
||| |||||||||||||||||||||||||||| ||||
Sbjct 442 TGTGTGAAGGAGTTGGAAGAACTCTTAAAGGAAGAGA 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5