BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11730.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910932 jgi|Araly1|910932|Al_scaffold_0001_1186 1692 0.0
Ahg942467 jgi|Araly1|942467|scaffold_603011.1 82.4 7e-15
> Ahg910932 jgi|Araly1|910932|Al_scaffold_0001_1186
Length=1194
Score = 1692 bits (916), Expect = 0.0
Identities = 1108/1194 (93%), Gaps = 39/1194 (3%)
Strand=Plus/Plus
Query 1 ATGTCATTCAAGAACAGAGGAGATTACAATTTTACTCCAAGAAATGTAGTTTCTAGAAAC 60
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTTCAAGAACAGAGGAGAGTACAATTTTACTCCAAGAAATGTAGTTTCTAGAAAC 60
Query 61 TCTGTATTTTTCATGTGCCTCGCAAGTTTCTGCCTTGGAATGTTCTTCACTAACAGGATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTATTTTTCATGTGCCTCGCAAGTTTCTGCCTTGGAATGTTCTTCACTAACAGGATG 120
Query 121 TGGAATATAGTACCTGAAGCTAGAGGCATATCAAGACTCTCCAAACTAAGCTTAAGTTCC 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAATGTAGTACCTGAAGCTAGAGGCATATCAAGACTCTCCAAACTAAGCTTAAGTTCT 180
Query 181 AGTGATTGCGATAAAAAGAATGTTTTGGACTATGGTAACAACACTATCGGGATCTTAGAT 240
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 181 AGTGATTGCCATAAAAAGAATGTTTTGGAGTTTGGTAACAACACTATCGGGATCTTAGAT 240
Query 241 AAATCCATTTCAAATTTAGAGATGAAACTAGTAGCTGCTAGAGCTGAACGTGAGTCATTG 300
||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 241 AAATCCATTTCAAGTTTAGAGATCAAACTAGTAGCTGCTAGAGCCGAACGCGAGTCGTTG 300
Query 301 TCCGGGAAATTTAACATATCCAATGAAGCTAAGAAAAGAAAATACTTCATGGTTATCGGT 360
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 GCCGGGAAATTTAACATTTCCAAAGAAGCGAAGAAAAGAAAATACTTCATGGTTATCGGT 360
Query 361 ATTAACACGGCCTTTAGTAGTCGTAAGAGACGTGACTCTGTCCGGTCAACATGGATGCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTAACACGGCCTTTAGTAGTCGTAAGAGACGTGACTCTGTCCGGTCAACATGGATGCCA 420
Query 421 CAAGGAGAGAATCTTAAGAAACTTGAAGAAGAGAAAGGCATCATTGTTCGCTTTGTTA-T 479
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CAAGGAGAGAAGCTTAAGAAACTTGAAGAAGAGAAAGGCATCATTGTTCGCTTTGTTATT 480
Query 480 ------AGG-AC-AT-----AG----TGTGTTGTCCCACGGGATTCTTGATAAAGCTATT 522
||| || || || ||||||||| | ||||||||||||||||| |||
Sbjct 481 GGACACAGGTACAATGGAGAAGTCATTGTGTTGTCTCGGGGGATTCTTGATAAAGCCATT 540
Query 523 GAAGCAGAAGAGAAAACACATGGTGATTTCTTGAGACTGGAACATACGGAGGGATACATG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGCAGAAGAGAAAACACATGGTGATTTCTTGAGACTGGAACATACGGAGGGATACATG 600
Query 583 AAGTTATCTGCCAAGACAAAGACGTTTTTCGCTACCGCTGTTTCCTTGTGGGATGCAGAA 642
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 601 GAGTTATCTGCCAAGACAAAGACGTTTTTCGCTACCTCTGTTTCCTTGTGGGACGCAGAA 660
Query 643 TTCTACATCAAAGTTGACGATGACGTTCATGTGAATCTTGCCTCCCTCAAGAAGGCTTTA 702
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct 661 TTCTACATCAAAGTTGACGACGACGTTCATGTGAATCTTGCCACTCTCAAGAAGACTTTA 720
Query 703 TCCGCACACCAAAACAAGCCTCGGGTTTATGTTGGTTGCATGAAGTCTGGTCCCGTCCTA 762
|||| ||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 721 TCCGTACACCGAAACAAGCCTCGAGTTTACGTTGGTTGCATGAAGTCCGGTCCCGTCCTA 780
Query 763 GCCAGAAAGAGTGTGAAGTACCATGAGCCAGAGTATTGGAAGTTTGGAGAAGTCGGGAAC 822
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 781 GCCAGAAATAGTGTGAAGTACCATGAACCAGAGTATTGGAAGTTTGGAGAGGTCGGGAAC 840
Query 823 AAGTATTTCCGCCACGCCACTGGACAGTTTTATGCTATATCTAAAGATCTAGCTACTTAC 882
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 841 AAGTATTTCCGCCACGCCACGGGACAGTTTTACGCCATATCTAAAGATCTAGCTACTTAC 900
Query 883 ATACTGATAAACCAGGATTTACTGCATAAGTATGCGAATGAAGATGTTTCGTTGGGATCT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATACTGATAAACCAGGATTTACTGCATAAGTATGCGAATGAAGATGTTTCGTTGGGATCT 960
Query 943 TGGTTCATCGGATTGAATGTAGAACATGTTGATGAAAAAAGACTTTGTTGCAGTACTTCT 1002
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 961 TGGTTCATCGGATTGAATGTAGAACATGTTGATGACAAAAGACTCTGTTGCAGTACTTCT 1020
Query 1003 CA----A--GA--TT---------G-T-G--AACTAAAAGCAATGATGGGACATGTTTGC 1041
|| | || || | | | ||||||||||| ||||||||||| |||
Sbjct 1021 CAGGGTAAAGAGCTTAACAATCCTGATTGTGAACTAAAAGCAGTGATGGGACATAATTGT 1080
Query 1042 GCGGCGTCGTTCGACTGGAAATGCAGCGGAATCTGTCGGTCGGCTGAGAGGATGGCCGAC 1101
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 GCGGCGTCGTTCGACTGGAAATGCAGCGGAATCTGTCGATCGGCTGAGAGGATGGCCGAC 1140
Query 1102 GTTCACGAACGTTGTGGTGAACCTCAAAATGCATTATGGACGTCAAATTCCTGA 1155
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTTCACGAACGTTGTGGCGAACCTCAAAATGCATTATGGACGTCAAATTCCTGA 1194
> Ahg942467 jgi|Araly1|942467|scaffold_603011.1
Length=345
Score = 82.4 bits (44), Expect = 7e-15
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 781 TACCATGAGCCAGAGTATTGGAAGTTTGGAGAAGTCGGGAACAAGTATTTCCGCCACGCC 840
||||||||||||||||||||||||||||| |||| || |||||| | ||| | |||||
Sbjct 251 TACCATGAGCCAGAGTATTGGAAGTTTGGTGAAGAAGGAAACAAGAACTTCAGACACGCA 310
Query 841 ACTGGACAGTTTTATGCTATATCTAAAGATCTAGC 875
|||||||| | || || || || |||||| ||||
Sbjct 311 ACTGGACAAATCTAAGCCATCTCCAAAGATTTAGC 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5