BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11740.1
Length=2198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312202 jgi|Araly1|312202|fgenesh1_pm.C_scaffold_1000982 2379 0.0
> Ahg312202 jgi|Araly1|312202|fgenesh1_pm.C_scaffold_1000982
Length=1887
Score = 2379 bits (1288), Expect = 0.0
Identities = 1507/1612 (93%), Gaps = 18/1612 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAGGTCTTCGCCGGCAAATATTCCGGCCACTACTATAGATGATTATGCTCACAGT 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGGTCATCGCCGGCGAATATTCCGGCCACTACTATAGATGATTATGCTCACAGT 60
Query 61 CCCGTCCACTACGCCGTCGTTGTAGGAGATCACGCCGGTTTGACTCGTCTGGTTTCGTCT 120
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 61 CCCGTCCACTACGCCGTCGTTGTAGGAGATCACGCCGGTTTGTCTCGTCTTGTTTCGTCT 120
Query 121 TTGCCTAAACTAACCGACCCGGAACAAATCCACACCGAGTCCGACTCAATGAGCCAAGAG 180
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 TTGCCTAAACTAACCGACCCGGAACAAATCCACACTGAGTCCGATTCAATGAGCCAAGAG 180
Query 181 CGAGTCGCGGAGAAAATCTCCACCGTCATCGACCGCCGTGACGTTCCCTTTGGAGAGACG 240
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CGAGTCGCGGAGCAAATCTCCACCGTCCTCGACCGCCGTGACGTTCCCTTTGGAGAGACG 240
Query 241 CCTCTCCATTTAGCCGTACGTCTCGGCGACGTTTTCGCGGCAAAGACTATATCTTCCGCC 300
|||||||||||||| ||||| | |||||| |||| || || ||||| || |||||||||
Sbjct 241 CCTCTCCATTTAGCGGTACGGATAGGCGACTTTTTGGCAGCGAAGACGATTTCTTCCGCC 300
Query 301 GGTGCTGATATCACGCTCCAAAACGCCGCCGGGTGGAACTCCTT-GCATGAGGCTTTGTG 359
|| ||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||
Sbjct 301 GGAGCTGATATCACGCTCCAAAACGCCGCCGGTTGGAA-TCCTTTGCACGAGGCTTTGTG 359
Query 360 TCGTCGGAACTCAGAGATCACGGAGGCAATTCTCCGGGACCATCACCGTTCGGCGTGGTG 419
|||||| |||||||||||||||||| | ||||||||| |||| |||||||||||||||
Sbjct 360 TCGTCGAAACTCAGAGATCACGGAGACGATTCTCCGGAACCACCACCGTTCGGCGTGGAA 419
Query 420 CAAATGGAGACGGAGACTTCCTCATCTCATCGCCGTACTCAGCCGCATGAGAGATTTCTA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 CAAATGGAGACGGAGACTTCCTCATCTCATCGCCGTGCTCAGCCGCATGAGAGATTTCTA 479
Query 480 CATGGAGATATCATTTCACTTCGAGAGCTCCGTGATTCCATTCGTCGGAAAAATCGCTCC 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATGGAGATATCGTTTCACTTCGAGAGCTCCGTGATTCCATTCGTCGGAAAAATCGCTCC 539
Query 540 TTCCGATACTTACAAGATATGGAAACGCGGTGGAGATTTACGCGCCGATACTTCATTAGC 599
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TTCCGATACTTACAAGATCTGGAAACGCGGCGGAGATTTACGCGCCGATACTTCATTAGC 599
Query 600 CGGATTCGACGGTTTCAAGATACGCCGCGCCAATCAGAGCTTTCTCTTTCTTAGTGATGG 659
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 600 CGGATTCGACGGTTTCAAGATCCGCCGCGCGAATCAGAGCTTTCTCTTTCTTAGTGATGG 659
Query 660 AGATGAGTTTCTTGATGTGTCTCCTGGTACGTTGCTTGTGTTAAACAGAGACGATAAAAC 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AGATGAGTTTCTTGATGTGTCTCCTGGTACATTGCTTGTGTTAAACAGAGACGATAAAAC 719
Query 720 GATCTTGAACGCTTTCGAAAACGCTAAAGATCCGATTAGCGATAGCGATATAGCTGGCTT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 720 GATCTTGAACGCTTTCGAAAACGCTAAAGATCCGATTAGCGATAACGATATCGCCGGCTT 779
Query 780 TTGTGGTCAATCTAGCTTGTACCGTCCGGGGATGGATGTTACTAAAGCAAAGCTCGTTGA 839
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 780 TTGTGGTCAATCTAGCTTGTACCGTCCTGGAATGGATGTTACTAAAGCAGAGCTCGTTGA 839
Query 840 GATTACGAATTGGCGACGGCAAGCGAAGATTGAAACTGTCGGAGAGTGGAAAGCTAAAGC 899
||| ||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||||
Sbjct 840 GATAACGAATTGGCGACGGCAAGGGAAGGTTGAAACTGTCGGAGAATGGAAGGCTAAAGC 899
Query 900 TTACGATGTCGAAAACGTTAGTTTTAGTTTTAAATCAAGAAAAGTCGGAAA-AGAGCAGG 958
||||||| |||||||||| ||||||||||| ||||| |||||||||| ||| |||||||
Sbjct 900 TTACGATATCGAAAACGTAAGTTTTAGTTTCAAATCGAGAAAAGTCG-AAACAGAGCAGA 958
Query 959 GTTTGCGTTTGGACGAGACTCGTCGGAGTGTGTCAGAACCGTTACGGCCGCAG--AG-GC 1015
|||||| ||||||||||| || | ||||||| |||||||||||||||| |||| | ||
Sbjct 959 GTTTGCCTTTGGACGAGAATCATTGGAGTGTATCAGAACCGTTACGGCGGCAGCCACAGC 1018
Query 1016 GG-GA-----GCAGAGGAGGAGATCGGTTTCTTTACCGGAAGCGGCGATTCTGGTGGCGA 1069
|| || || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 GGCGATCTTCGCGGAGGAGGAGATCGGTTTCTTTACCGGAAGCGGCGATTCCGGTGGC-- 1076
Query 1070 ATTCTTCTGTGGGGCGGATCAAAGAAAAGGAGATTGTGAAGAGTTTGCGTCCTTCGGTTT 1129
||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1077 -TTCTTCTGTGGCGCAGATCAAAGAAAAGGAGTTTGTGAAGAGTTTGAGTCCTTCGGTTT 1135
Query 1130 GGTTAACGGATCAGTTTCCTTTGAAAACAGAGGAGTTGCTTCCGTTGCTTGATATTTTAG 1189
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1136 GGTTAACGGATCAGTTTCCTTTGAAAACAGAGGAGCTGCTTCCGTTGCTTGATATTTTAG 1195
Query 1190 CCAACCATGTCAAGGCTGTTCGGAGAATGCGAGAGCTGCTTACCACCAAGTTCCCGGCGG 1249
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||
Sbjct 1196 CCAACCATGTCAAGGCTGTTCGGAGAATGCGAGAGCTACTTACCACTAAGTTGCCGACGG 1255
Query 1250 GAACTTTTCCGGTCAAGTTGTCCATACCGGTGATCCCAACAGTAAAAGTAGTCATGACAT 1309
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1256 GAACTTTTCCGGTCAAGTTGTCCATACCGGTGATTCCAACAGTAAAAGTAGTCATGACAT 1315
Query 1310 TCAGCAAGTTCGTGGCTCTTCCACCGTTGGATGAATTCTACACACCGCTCTCAAGTCCAA 1369
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TCACCAAGTTCGTGGCTCTTCCACCGTTGGATGAATTCTACACACCGCTCTCAAGTCCAA 1375
Query 1370 AACATCTATTAGCTGCAATGGAAGACCAACATGACGTGCACGATGATGAAAAATTAGATA 1429
| ||||| ||||||||| ||||||||||||| |||||| ||||| ||||||||| |||||
Sbjct 1376 ATCATCTTTTAGCTGCAGTGGAAGACCAACACGACGTGGACGATAATGAAAAATCAGATA 1435
Query 1430 GAAGAATCTCAAGTTCACGTCCATCGTTTTCAACGCCTTCTTGGTTGAGACTGAACATCA 1489
|||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1436 GAAGAATCTCAACTTCACGGCCATCGTTTTCAACACCTTCTTGGTTGAGACTAAACATCA 1495
Query 1490 ATGCCACCGGCAAGAGCTCACGGCGGCGTTTGGTGGATGAGGAACAAGTGGTGGATCCAT 1549
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1496 ATGCCATCGGCAAGAGCTCACGGCGGCGTTTGGAGGATGAGGAACAAATGGTGGATCCAT 1555
Query 1550 TCACGATACCAACAGGGTATAAGTGGACTAG-TAACTCAGATAATTCAGTCT 1600
|||||||||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct 1556 TCACGATACCAACAGGATATAAGTGGACTAGCTA-CTCAGATAAATCAGTCT 1606
Score = 451 bits (244), Expect = 9e-126
Identities = 273/287 (95%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 1656 AGTCTTTACCAAGAAGAGCTCCAAGAATCAGAGGTACATAAGATATTGGGATCA-TTATA 1714
|||||||||| |||||||||||||||||||||| ||||||||||||||||| | || ||
Sbjct 1602 AGTCTTTACCGAGAAGAGCTCCAAGAATCAGAGACACATAAGATATTGGGAT-AGTTGTA 1660
Query 1715 AAATGGCGAGTGAAGCACCTAGTTGGGCGGATCAATGGGGGACCGGAGGAATTGGGGTGA 1774
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 ATATGGCGAGTGATGCACCTAGTTGGGCGGATCAATGGGGGACCGGAGGAATTGGGGTGA 1720
Query 1775 TGGCTGCGGAGGAGACAACTGACGGCAAAAAAGACGTCACCGGGAAAAAGTCCGGCAAGA 1834
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1721 TGGCTGCGGAGGAGACAACTGACGGCAAAAAAGACGTCACCGGGAAAAAGTCTGGCAAGA 1780
Query 1835 CCAAAGCAGGGATTAACAAAGCCAAGATTGTTGTATTTATTGGTGTCAATTGGATGAAGA 1894
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1781 CCAAAGCAGGCATCAACAAAGCCAAGATTGTTGTATTCATTGGTGTCAATTGGATGAAGA 1840
Query 1895 ATCTTGTGCAGAGGAAGAAGAAGGATTCTACTTCTTCATAGATATAA 1941
||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1841 ATCTTGTGCAGAGGAAGAAGAAGGACTCTACTTCTTCACAGATATAA 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82732012140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5