BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11755.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910935 jgi|Araly1|910935|Al_scaffold_0001_1189 1219 0.0
Ahg471314 jgi|Araly1|471314|fgenesh2_kg.1__1268__AT1G11750.1 228 1e-58
> Ahg910935 jgi|Araly1|910935|Al_scaffold_0001_1189
Length=1245
Score = 1219 bits (660), Expect = 0.0
Identities = 728/762 (96%), Gaps = 0/762 (0%)
Strand=Plus/Plus
Query 257 ATATATGGATTCGAATCAATCGATGCGGCTCCTCAGTGCTTGGATTGGTCAAATTGGTGA 316
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 423 ATATATGGATTCGAATCAATCGATGCGGCTCCTGAGTTCTTGGATTGGTCAAATTGGTGA 482
Query 317 TCTTGGTCTTAATTTGCTATGGCGTTTTATACACATTGTTGTGAGCTTATGGTACATTGT 376
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 483 TCTTGGTCTTAATTTGCTATGGCGTTTCATACACATTGTTGTGAGCTTGTGGTACATTGT 542
Query 377 CTCTGGCATATTTGAGGCAATAGAAAGCTATGCCATAACGTTAGGATTGAATAAAAAGTA 436
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 543 ATCTGGCATATTTGAGGCAATCGAAAGCTATGCCATATCGTTAGGATTGAATAAAAAGTA 602
Query 437 CGGTTCCATCGATCTTGAGAAACTCCGGTGTCTAGCTGTTGTAGTGGACATCGAAGCAGC 496
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CAGTTCCATCGATCTTGAGAAACTCCGGTGTCTAGCTGTTGTAGTGGACATCGAAGCAGT 662
Query 497 TCAAGATGTTGCCAATGTTGTTGAGCTTTTGCAATGGCTAACCACCATTGGGGTTAAACA 556
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 663 TCAAGATGTTGCCAAGGTTGTTGAGCTTTTGCAATGGCTAACAACCATTGGGGTGAAACA 722
Query 557 AGTTGGTCTATTTGACTCTCAAGGTTTATTGAAGAAATCCAAGGATTTGATCCTTGAAAC 616
||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 723 AGTTGGTCTTTTTGACTCGCAAGGTGTACTGAAGAAATCCAAGGATTTGATCCTTGAAAC 782
Query 617 CGTTCCAGGTTCCATGTTGTTAGAGGAGATTGAAAAGGATGTTGCGCCTGACGGAAAGCG 676
|||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 783 CGTTCCAGGTTCGATGTTGTTAGAGGAGATTGGAAAGGATTTTTCGCCTGACGGAAAGCG 842
Query 677 CATTGCATTAGAATTCATTTCATCTTCAGACAATAAAGAAGCTGTTATGAAAGCAGCCAA 736
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 843 CATTGCATTAGAATTTATTTCATCTTCCGACAATAAAGAAGCTGTTATGAAAGCAGCCAA 902
Query 737 CATACTTCTTCAGAGATACTTGAAATCCAGCCATCCTGAGGACGACAAAGGGGAAGACTT 796
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||
Sbjct 903 CATACTTCTTCAGAGATACTTGAAATCCAGCCATCCCGAGAACGATAAAGGGGAAAACTT 962
Query 797 TTTTACAGAGTCTCATTTGAATGACGCATTAAGAGTTGTTGGTGAGAATGTGCATGTACC 856
|||||||||||||||||||||||| |||||| ||||||||||||||||||| || || ||
Sbjct 963 TTTTACAGAGTCTCATTTGAATGAAGCATTAGGAGTTGTTGGTGAGAATGTACACGTGCC 1022
Query 857 CGATCTGTTACTGGTTTATGGACCTATAAGGAGCCACCTCGGTTTCCCTGCTTGGAGACT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CGATCTGTTACTGGTTTATGGACCTATAAGGAGCCACCTCGGTTTCCCTGCTTGGAGACT 1082
Query 917 TCGATACACTGAGATAGTACATATGGGAACTTTGAAGTATATGAGATATGGTTCCCTTTT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1083 TCGATACACTGAGATAGTACATATGGGAACTTTGAAGTATATGAGATATGGTTCCCTGTT 1142
Query 977 GAAGGCAATTCACAAGTTCACAGGAGTCCACCAAAACTATGG 1018
|||||||||||||||||||||||| || ||||||||||||||
Sbjct 1143 GAAGGCAATTCACAAGTTCACAGGTGTACACCAAAACTATGG 1184
> Ahg471314 jgi|Araly1|471314|fgenesh2_kg.1__1268__AT1G11750.1
Length=1209
Score = 228 bits (123), Expect = 1e-58
Identities = 158/174 (91%), Gaps = 5/174 (3%)
Strand=Plus/Minus
Query 1161 CTATGTACCAAAGCAACATATGCATTGGCATTGTATAGGATTAAGT-AGTAACAAGCTGG 1219
||||||||||||||||| || || ||| |||||||||||||| ||| |||||||||||||
Sbjct 1209 CTATGTACCAAAGCAACTTACGCCTTGCCATTGTATAGGATTTAGTAAGTAACAAGCTGG 1150
Query 1220 ACCTAACCAATCCGGTTTTTCCATAAAGTTCCGGTTTGCTTGGTTATCGTGTGTAAACAA 1279
|||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1149 ACCTAACCAATCTGG-TTTTCCATAAAGTTCCGGTCTGCTTGGTTATCGTGTGTAAACAA 1091
Query 1280 AAATAGAACACAA--CTTTCAGATTTTTCAGTaaaaaaaTAAACAGTTTAGTTT 1331
|||||||||| || |||||||||||||| |||||||| || |||||||||||
Sbjct 1090 AAATAGAACATAAAACTTTCAGATTTTTCGGTAAAAAAG-AACCAGTTTAGTTT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5