BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11765.1
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471317 jgi|Araly1|471317|fgenesh2_kg.1__1271__AT1G11765.1 813 0.0
> Ahg471317 jgi|Araly1|471317|fgenesh2_kg.1__1271__AT1G11765.1
Length=587
Score = 813 bits (440), Expect = 0.0
Identities = 546/593 (92%), Gaps = 24/593 (4%)
Strand=Plus/Plus
Query 3 GACAAAACCTCTAAGCATCTAGAAAGaaaaaatgaaaaaTACTTCAATCTTTCTAGTTGT 62
|||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1 GACAAAACCTCTAAACATCTAGAAAG-AAAAATGAAAAACATTTCAATCTTTCTAGTTGT 59
Query 63 CTTTGCCCTATGCATGATTAGCAATGCATATGGCCA-TTCGAATCCATTTAAAGGAAAAA 121
|||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||
Sbjct 60 TTTTGCCCTATGCATGATTGGCAATGCATATGG-CATTTCCAATCCATTTAAAGGAAAAA 118
Query 122 AGACGTCGTTGTTATTCAGGAACAGTCTTTCTCACAACAAATGGCTCAAGGTACGTTGTA 181
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 119 AGACGTCGTTGTTATTCAGGAACAGCCTTTCACACAACAAATGGCTCAAGGTACGTTGTA 178
Query 182 AATCTGGGGACAATGATGTTCGTGAAAGATATATGAAACCTGGAGAAGATTGGGGTTTTA 241
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 AATCTGGGGACAACGATGTTCGTGAAAGATATATGAGACCTGGAGAAGATTGGGGTTTTA 238
Query 242 GTTTCCACGATGACGTTATGGGAGAAACACTTTTCTGGTGTACAATGTATAAAGGAGCTG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTTTCCACGATGACGTTATGGGAGAAACACTTTTCTGGTGTACAATGTATAAAGGAGCTG 298
Query 302 ATTACAAGGTACAA-AAGAAGTTTGACGCATATGTTCAAGACAAGAGAATGCCTCATGGT 360
|||| ||| || || |||| |||||| || |||||||||||||||||||||||||| |||
Sbjct 299 ATTATAAGATA-AAGAAGACGTTTGATGCTTATGTTCAAGACAAGAGAATGCCTCACGGT 357
Query 361 GGCTCGTATAATTATGTTGCTCAAGAAGATGGGATCTATCACAGTACTTTGATACACCGT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGCTCGTATAATTATGTCGCTCAAGAAGATGGGATCTATCACAGTACTTTGATACACCGT 417
Query 421 ATGCGGAAGATGTATGATTGGAATTAGGGATGTTGGATAAAACTCTCCTATGTTTATCCA 480
||||||||||||||||||||||||||| | | |||| ||||||||||| || ||
Sbjct 418 ATGCGGAAGATGTATGATTGGAATTAG--A------A-AAAA-TCTCCTATGTT-ATTCA 466
Query 481 ATATTTATAAAATGCTTATTCAAATCT-TTGATTTGATATAGTTGTAAAGTATTATTATT 539
|||||||||| |||||| |||||| | |||||||||||||||||||||||||| |||||
Sbjct 467 ATATTTATAA--TGCTTACTCAAAT-TATTGATTTGATATAGTTGTAAAGTATTTTTATT 523
Query 540 ACTCTTTGTTTTCATGTAAGAATCACTCTTTACATTCAAAGAAAAGTGTAAGG 592
| | || |||| |||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 524 A-T-TT-GTTT-CATGGAAGAATCACTCTTTACATTAAAAGAAAAGTGGAAGG 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23254979370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5