BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11770.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471318 jgi|Araly1|471318|fgenesh2_kg.1__1272__AT1G11770.1 2460 0.0
> Ahg471318 jgi|Araly1|471318|fgenesh2_kg.1__1272__AT1G11770.1
Length=1611
Score = 2460 bits (1332), Expect = 0.0
Identities = 1522/1615 (94%), Gaps = 8/1615 (0%)
Strand=Plus/Plus
Query 1 ATGAAGATCTTTTGTTTAATTCTCTTCTTAATCTCCTCCTTCATCTCTACTTCTCTTGCC 60
|||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct 1 ATGAAGATCTTTTGTTTAATTCTCTTCTTAATCTCCTCCTCCATCTCCACTTCTATTGCC 60
Query 61 GTCGAACCTCCGCCTGAAACAATCTACCAAAACTTTCTCCAATGTTTCACAAACCAAACA 120
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCGAACCTCCCCCAGAAACAATCTACCAAAACTTTCTCCAATGTTTCACAAACCAAACA 120
Query 121 AAAGCTCCTCCTAACTCATTAGCCGACGTCGTTTTACCAAAAACCGCTGCCGCTTTCACC 180
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 121 AAAGCTCCTCCTAACTCATTATCCGACGTCGTTTTACCAAAAACCGCGGCAGCTTTCACC 180
Query 181 CCCGTCTTACGCGCTTACATCCGTAACGCGCGTTTCAACACCACAGCGACTCCGAAACCC 240
|| ||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 181 CCAGTCCTACGCGCTTACATCCGAAACGCGCGTTTCAATACCACCGCGACTCCGAAACCC 240
Query 241 GCGATCGTAATCGCGGCGCGTTCCGAGAGTCACGTCCAAGCTGCCGTCATCTGCACGAAA 300
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GCGATTGTAATCGCGGCTCGTTCCGAGAGCCACGTCCAAGCTGCCGTCATCTGCACGAAA 300
Query 301 TCGCTAAACATCCAACTGAAAACTCGAAGCGGTGGTCATGACTACGAAGGTGTTTCCTAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGCTAAACATCCAACTGAAAACTCGAAGCGGTGGTCATGACTACGAAGGTGTTTCCTAT 360
Query 361 ATCTCTCACGTTCCTTTCTTCGTCCTCGACATGTCAAATCTCCGTAACATCACCGTCGAC 420
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTCTCTCACGTTCCTTTCTTCGTCCTCGACATGTCCAATCTCCGTAACATCACCGTCGAC 420
Query 421 CCCGCCACAGAGTCTGCATGGGTCGGTGCCGGTGCAACACTCGGTGAAGTTTACTACAGG 480
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||| ||||||
Sbjct 421 CCGGCCACCGAGTCTGCATGGGTCGGAGCCGGTGCAACTCTTGGTGAGGTTTATTACAGG 480
Query 481 ATTTGGGAAAAAACCAAAAGTCATGGATTCCCCGCCGGAGTTTGTCCCACGGTTGGAGCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTGGGAAAAAACCAAAAGTCATGGATTCCCCGCCGGAGTTTGTCCCACGGTTGGAGCC 540
Query 541 GGAGGTCACATTAGCGGTGGTGGCTACGGAAACATGATCCGAAAATACGGACTCTCCGTT 600
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGAGGTCACATTAGCGGTGGCGGTTACGGAAACATGATCCGAAAATACGGACTTTCCGTT 600
Query 601 GATTACGTCACCGACGCCAAAATCGTTGATGTTAATGGACAGGTTCTTGATCGGAAAGGA 660
|||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 601 GATTACGTTACCGACGCCAAAATCGTTGACGTTAATGGACGGGTTCTTGATCGGAAAGGA 660
Query 661 ATGGGAGAAGACATGTTTTGGGCCATTAACGGTGGAGGCGGTGCTAGCTTCGGTGTTATC 720
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 ATGGGAGAAGATTTGTTTTGGGCCATTAACGGTGGAGGTGGTGCTAGCTTCGGTGTTATC 720
Query 721 CTAGCTTTCAAGATCAAACTCGTCCCTGTTCCACCGACCGTAACCGTTTTCAGAGTAGAG 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTAGCTTTCAAGATTAAACTCGTCCCTGTTCCACCGACCGTAACCGTTTTCAGAGTAGAG 780
Query 781 AAAAACTTAGTCGAAAATGCTACTGAAATGGTTCATAAATGGCAATTTGTTGCACCCAAG 840
|||||||| | ||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 781 AAAAACTTGGACGAAAATGCTATTGACATGGTTCATAAATGGCAGTTTGTTGCACCCAAG 840
Query 841 ACCGATCCAGGTCTATTCATGAGGCTATTGTTGCAGCCGGTGACTAGGAATAAAATGCAA 900
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 841 ACCGATCCAGGTCTTTTCATGAGGCTATTGTTACAGCCGGTGACTCGGAATAAAAAACAA 900
Query 901 ACGGTTCGAGCATCGGTTGTGGCTCTCTTCTTGGGGGACCAAAACACTGTTATGTCTATG 960
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 901 ACGGTTCGAGCATCGGTTGTGGCTCTGTTCTTGGGGAACCAAAACACTGTTATGTCTATG 960
Query 961 CTAACCAAAGAATTCCCGGAGCTTGGTTTGAAGAAGGAGAACTGCACGGAGATGACTTGG 1020
||||||||||| ||||| ||||| ||| | ||||||||||| ||||||||||||||||||
Sbjct 961 CTAACCAAAGATTTCCCAGAGCTAGGTCTAAAGAAGGAGAATTGCACGGAGATGACTTGG 1020
Query 1021 ATACAGTCGGTGATGTGGTGGGCAAACAACGATAACGCTACGCAGATTAAACCGGAGATT 1080
||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||
Sbjct 1021 ATACAGTCGGTGATGTGGTGGGCGAACAACGATAACGCCACACAGATTAAACCCGAGATT 1080
Query 1081 CTACTGGACCGAAACCCTGATAT-GGCGA-CTTTCGGGAAAAGGAAATCTGATTTCGTTG 1138
|||||||| |||||||| || | || | |||||||||||||||| ||||||||||| |
Sbjct 1081 CTACTGGATCGAAACCCGGA-CTCAGC-ATCTTTCGGGAAAAGGAAGTCTGATTTCGTCG 1138
Query 1139 AGAAAGAGATCACTAAAGATGGTTTAGATTTCTTGTTCAAGAAAATGATTGAAGTTGGGA 1198
||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 1139 AGAAAGAGATCACCAAAGAGGGGCTAGATTTCTTGTTCAAGAAGATGATTGAAGTTGGGA 1198
Query 1199 AGATAGGGTTAGTGTTTAATCCTTACGGAGGGATAATGAG-TACGGTGGCTACAACGAAG 1257
||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1199 AGATAGGTTTAGTGTTTAATCCTTATGGAGGGATAATGAGCGA-GGTGGCTACAACGAAG 1257
Query 1258 ACACCATTCCCACATAGGAAGAAGCTTTACAAAATCCAGCATTCGATGAACTGGAAAGAT 1317
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ACTCCATTCCCGCACAGGAAGAAGCTTTACAAAATCCAGCATTCGATGAACTGGAAAGAT 1317
Query 1318 CCGGGAACCGAAGCGGAAACCAGTTTCTTGCAGAAGGCGAAAAGCTTT-TATAGCTACAT 1376
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1318 CCGGGAACCGAAGCGGAAACCAGTTTCTTGCAGAAGGCGAAAAG-TTTCTATAGCTACAT 1376
Query 1377 GGCTCCTTTTGTGACCAAGAACCCTAGACACACTTATATCAATTACAGGGATCTGGATAT 1436
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGCTCCTTTCGTGACCAAGAACCCTAGACACACTTATATCAATTACAGGGATCTGGATAT 1436
Query 1437 TGGAGTTAATACCCCTGGCCCAAACAGTTACAGAGTAGCAGAGGTTTTCGGGAGGATGTA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGGAGTTAATACCCCTGGCCCAAACAGTTACAGAGTAGCAGAGGTTTTCGGGAGGATGTA 1496
Query 1497 TTTCGGTGAAAATTTTGATCGGTTGGTGAAAGTGAAAACTGCTGTGGATCCGCAAAATTT 1556
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1497 TTTCGGAGAGAATTTTGATCGGTTGGTGAAAGTGAAAACTGCCGTGGATCCGCAAAACTT 1556
Query 1557 CTTCAGAGACGAACAGAGTATACCTACCTTGCCTGGCAAGCCAGCTAGGCGTTAG 1611
|||||||||||||||||||||||||||||||||| |||| ||| | || ||||||
Sbjct 1557 CTTCAGAGACGAACAGAGTATACCTACCTTGCCTAGCAACCCACCCAGACGTTAG 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5