BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11780.1
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920006 jgi|Araly1|920006|scaffold_101287.1 1661 0.0
Ahg471318 jgi|Araly1|471318|fgenesh2_kg.1__1272__AT1G11770.1 713 0.0
> Ahg920006 jgi|Araly1|920006|scaffold_101287.1
Length=1079
Score = 1661 bits (899), Expect = 0.0
Identities = 1020/1079 (95%), Gaps = 6/1079 (1%)
Strand=Plus/Plus
Query 1 CGACTGGTGAA--GAAGAAGATGTACGAATCGGCGAACGTCTCCGACGACGCAGATCGTA 58
||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CGACTGGTGAAGTGAA-AA-ATGTACGAATCGGCGAACGTCTCCGACGACGCAGATCGTA 61
Query 59 CGGCTTTCCGGCGAGCAGAGAAAAAATACAAACTTTACTATGAACAGGATTCTAAGTTCT 118
|||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 62 CGGCTTTCCGGCAAGCAGAGAAAAAATACAAACTTTACTATGAAAAAGATTCAAAGTTCT 121
Query 119 CTAGAAAGAAGAAGCTACCAAAACCAATTGATTTGTCTGAGTTACTTGATTTCAATTTGA 178
|||||| |||||||||||||||||||||||||||||| ||| | |||||||||| |||||
Sbjct 122 CTAGAAGGAAGAAGCTACCAAAACCAATTGATTTGTCGGAGCTGCTTGATTTCAGTTTGA 181
Query 179 TTTCACAAAATTTCAACAATGACGGTGTTTTGCCAGACGGAATTAGGGTTTCGAAAGTTG 238
|||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 182 TTTCACAAGATTTCAACAATAACGGTGTTTTGCCTGACGGAATTAGGGTTTCGAAAGTTG 241
Query 239 ATTCTTCTCCTGTGTTCTGCATCGATAATCGCCCTGGTTTTTACTTTATACCTGATGCAT 298
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 242 ATTCTTCTCCTGTGTTCTGCATCGAGAATCGCCCTGGTTTTTACTTTATCCCTGGTGCAT 301
Query 299 TGAGTTTAAAGGAGCAATGTAAATGGATTAAAGAGAGCTTGACGAGTTTTCCGCAGCCTC 358
|||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 302 TGAGTTTAGAGGAGCAATGTAAATGGATTAAAGAGAGTTTGACCAATTTTCCGCAGCCTC 361
Query 359 CGAATAGAACAAACCACAATGCAATTTACGGTCCTATTGATGATTTGTTTGATTCAGCTA 418
||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 362 CGAATAGAACAAATCACAATGCAATTTATGGTCCTATTGCTGATTTGTTCGATTCAGCTA 421
Query 419 AAGAAAACAAGGTATTGGTTCAGGATGATCTTACCAACAACAAGTGGAAGTTCTATGAAG 478
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 422 AAGATAATAAGGTATTGGTTCAGGAGGATCTTACCAACAACAAGTGGAAGTTCTATGAAG 481
Query 479 AAGTA-GATATTGAAAAAGCAACACGAAGTAGTTGCAAATCAGTTTCAGCTTCAGTTCTT 537
||| | ||||||| |||||||| || |||| ||||||||||||||| ||||||||||||
Sbjct 482 AAG-ATGATATTGCAAAAGCAAAACAAAGTTCTTGCAAATCAGTTTCCGCTTCAGTTCTT 540
Query 538 TTGAGGAAGCTTCGATGGAGCACTCTCGGTTTACAGTTCGATTGGTCCAAGCGTAACTAT 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TTGAGGAAGCTTCGATGGAGCACTCTCGGTTTACAGTTTGATTGGTCCAAGCGTAACTAT 600
Query 598 GATGTTTCTCTCCCTCATAACAACATCCCTGACGCACTCTGTCAACTAGCTAAGACACAT 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 GATGTTTCTCTCCCTCATAACAACATTCCTGACGCACTCTGTCAACTAGCTAAGACACAT 660
Query 658 GCCGCCATTGCAATGCCTGACGGAGAGGAATTTCGTCCAGAGGGGGCTATTGTAAACTAT 717
||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 661 GCCGCCATTGCAATGCCTGACGGGGAGGAATTCCGTCCAGAGGGTGCAATTGTAAACTAT 720
Query 718 TTTGGCATAGGTGATACCCTTGGAGGCCACCTTGATGATATGGAAGCTGACTGGAGTAAA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTGGCATAGGTGATACCCTTGGAGGCCACCTTGATGATATGGAAGCTGACTGGAGTAAA 780
Query 778 CCCATAGTAAGCATGAGCTTGGGATGTAAAGCTATTTTCCTCTTAGGCGGAAAATCAAAA 837
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 CCCATAGTAAGCATGAGCTTGGGGTGTAAAGCTATTTTCCTCTTAGGCGGAAAATCAAAA 840
Query 838 GACGATCCTCCTCATGCTATGTATCTCAGAAGTGGAGATGTTGTACTAATGGCTGGAGAA 897
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATGATCCTCCTCATGCTATGTATCTCAGAAGTGGAGATGTTGTACTAATGGCTGGAGAA 900
Query 898 GCCAGAGAATGCTTTCACGGTATACCCCGTATCTTTACGGGTGAAGAAAATGCGGATATT 957
|| ||||||||||||||||| |||||||||||||||||| || |||||||||||| |||
Sbjct 901 GCTAGAGAATGCTTTCACGGCGTACCCCGTATCTTTACGGATGCAGAAAATGCGGAAATT 960
Query 958 GGTGCACTTGAATCAGAATTGTCCCATGAGAGTGGACATTTTTTCGCAGAGTATATCAAA 1017
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||
Sbjct 961 TGTGCACTTGAATCAGAATTGTCCCATGAGAGTGGGCATTTTTTCACAGAGTACATAAAA 1020
Query 1018 ACTTCGAGGATCAACATAAACATCAGGCAAGTTTTCTGAATTGCCTGAATTCTCCTGCT 1076
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1021 ACTTCGAGGATCAACATAAACATCAGGCAAGTTTTCTGAGTTGCCTGTATTCTCCTGCT 1079
> Ahg471318 jgi|Araly1|471318|fgenesh2_kg.1__1272__AT1G11770.1
Length=1611
Score = 713 bits (386), Expect = 0.0
Identities = 430/451 (95%), Gaps = 4/451 (1%)
Strand=Plus/Minus
Query 1381 CTAACGCCTAGCTGGCTTGCCAGGCAAGGTAGGTATACTCTGTTCGTCTCTGAAGAAATT 1440
|||||| || | ||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1611 CTAACGTCTGGGTGGGTTGCTAGGCAAGGTAGGTATACTCTGTTCGTCTCTGAAGAAGTT 1552
Query 1441 TTGCGGATCCACAGCAGTTTTCACTTTCACCAACCGATCAAAATTTTCACCGAAATACAT 1500
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1551 TTGCGGATCCACGGCAGTTTTCACTTTCACCAACCGATCAAAATTCTCTCCGAAATACAT 1492
Query 1501 CCTCCCGAAAACCTCTGCTACTCTGTAACTGTTTGGGCCAGGGGTATTAACTCCAATATC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CCTCCCGAAAACCTCTGCTACTCTGTAACTGTTTGGGCCAGGGGTATTAACTCCAATATC 1432
Query 1561 CAGATCCCTGTAATTGATATAAGTGTGTCTAGGGTTCTTGGTCACAAAAGGAGCCATGTA 1620
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1431 CAGATCCCTGTAATTGATATAAGTGTGTCTAGGGTTCTTGGTCACGAAAGGAGCCATGTA 1372
Query 1621 GCTATA-AAAGCTTTTCGCCTTCTGCAAGAAACTGGTTTCCGCTTCGGTTCCCGGATCTT 1679
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GCTATAGAAA-CTTTTCGCCTTCTGCAAGAAACTGGTTTCCGCTTCGGTTCCCGGATCTT 1313
Query 1680 TCCAGTTCATCGAATGCTGGATTTTGTAAAGCTTCTTCCTATGTGGGAATGGTGTCTTCG 1739
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1312 TCCAGTTCATCGAATGCTGGATTTTGTAAAGCTTCTTCCTGTGCGGGAATGGAGTCTTCG 1253
Query 1740 TTGTAGCCACCGTA-CTCATTATCCCTCCGTAAGGATTAAACACTAACCCTATCTTCCCA 1798
||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1252 TTGTAGCCACC-TCGCTCATTATCCCTCCATAAGGATTAAACACTAAACCTATCTTCCCA 1194
Query 1799 ACTTCAATCATTTTCTTGAACAAGAAATCTA 1829
||||||||||| |||||||||||||||||||
Sbjct 1193 ACTTCAATCATCTTCTTGAACAAGAAATCTA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68752892225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5