BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11790.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920007 jgi|Araly1|920007|scaffold_101288.1 2049 0.0
> Ahg920007 jgi|Araly1|920007|scaffold_101288.1
Length=1220
Score = 2049 bits (1109), Expect = 0.0
Identities = 1183/1220 (97%), Gaps = 0/1220 (0%)
Strand=Plus/Plus
Query 209 AAAAATCTCCCTGCTTTGCTATGGCTCTGAGGTGTTTTCCCATTTGGGTTTGTCCCCAAA 268
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AAAAATCTCCCAACTTTGCTATGGCTCTGAGGTGTTTTCCCATTTGGGTTTGTCCTCAAA 60
Query 269 CGACTCATCATCGTTCTCCTCTCATGGGTCTCGCTGAATTCGACGCTGATAAACGCCGTC 328
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 CGACTCATCATCGTTCTCCTCTTGTGGGTCTCGCTGAATTCGACGCTAATAAACGCCGTC 120
Query 329 GTTTCTGTCTCTGGGAGTGCTCTTCTTCAGCTTCTCAGAGAGCTGTCACTGCCATTGAAG 388
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GTTTCTGTCTCTGGGAGTGCTCTTCTTCAGCTTCTCAGAGGGCTGTCACTGCCATTGAAG 180
Query 389 GCGAGATTCCTTTTAGCCGCGAGCTCAAAAAGTCCTCTGATGAATTGGGTTTGACTCAGG 448
|||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GCGAGATTCCTTATAGCCATGAGCTCAAAAAGTCCTCTGATGAATTGGGTCTGACTCAGG 240
Query 449 AGACTCAATCTCTTTCTTTTCACAGAGACTTAAGTATGCTTCCTAAACCGCTAACTGCAA 508
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGACTCAATCTGTTTCTTTTCACAGAGACTTAAGTATGCTTCCTAAACCGCTAACGGCAA 300
Query 509 ACAGTCTTTACTCTTCTGATGGCGATGATTCAAAAGTGCGAATTTCGTTTCAGGGGATAC 568
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 301 ACAGTCTTTACTCTTCTGATGGCGATGATTCAAAAGTCCGAATTTCGTTTCAGGGCATAC 360
Query 569 CAGGTGCATATAGTGAGACAGCAGCACTAAAAGCATTTCCAAATTGTGAAACCGTTCCAT 628
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGGTGCATATAGTGAAACAGCAGCACTAAAAGCATTTCCAAATTGTGAAACCGTTCCAT 420
Query 629 GTGAACAGTTCGAAGCTGCGTTCCAGGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTAT 688
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 421 GTGAACAGTTCGAAGCTGCGTTTCAGGCTGTTGAGCTCTGGTTGGTGGACAAAGCAGTAC 480
Query 689 TACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTC 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTC 540
Query 749 ATAGGCTTCACATTGTCCAAGAAGTCCACTTGCCTGTGAATCATTGTCTCTTAGGAGTGC 808
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 541 ATAGGCTTCACATTGTCCAAGAAGTCCATTTGCCTGTAAATCATTGTCTCTTAGGAGTGC 600
Query 809 CTGGTGTTAAAAAGGAAGATATTAAATGTGTTCTAAGCCATCCTCAGGCGCTTGATCAAT 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGGTGTTAAAAAGGAAGATATTAAATGTGTTCTAAGCCATCCTCAGGCGCTTGATCAAT 660
Query 869 GTGTGAATTCACTTAACAATTTAGGCATACAGAGAATTTCTGCAAAAGATACTGCCACTG 928
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 GTGTGAATTCACTTAACAATTTAGGCATACAGAGAATTTCTGCAAAAGACACTGCCACTG 720
Query 929 CTGCTCAGACTGTTTCTTCAAGTGGTAAGATCGACGTAGGAGCAATCGCGAGTGTACGGG 988
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGCTCAGACTGTTTCTTCAAGCGGTAAGATCGACGTAGGAGCAATCGCGAGTGTACGGG 780
Query 989 CTGCAAATATCTATGGTCTAGATATTCTTGCTGAGAACATACAAGATGATGTTAACAATG 1048
|||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 781 CTGCAAATATATATGGTCTGGATATTCTTGCCGAGAACATACAAGATGATGCTAACAATG 840
Query 1049 TGACTCGCTTTCTGATACTTGCGAGAGAGCCTATGATTCCAAGAACAGATCGACCATATA 1108
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 TGACTCGCTTTCTGATACTTGCCAGAGAGCCTATGATTCCAAGAACAGATCGACCATATA 900
Query 1109 AGACAAGTATCGTGTTCTCGCTAGAAGAAGGTCCTGGTGTGCTGTTCAAGGCCTTGGCTG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGACAAGTATCGTGTTCTCGCTAGAAGAAGGTCCTGGTGTGCTGTTCAAGGCCTTGGCTG 960
Query 1169 TTTTTGCTTTACGAAGCATTAACTTATCTAAGATAGAAAGTCGTCCGCAGAGAAGAAGAC 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTTTTGCTTTACGAAGCATTAACTTATCTAAGATAGAAAGTCGTCCGCAGAGAAGAAGAC 1020
Query 1229 CGTTAAGAGTAGTTGATGGTTCTAACAATGGAAGCGCTAAGTACTTTGATTACTTATTCT 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGTTAAGAGTAGTTGATGGTTCTAACAATGGAAGCGCTAAGTACTTTGATTACTTATTCT 1080
Query 1289 ACATTGATTTTGAAGCCTCCATGGCTGATACACGTGCTCAGCACGCTCTTGGCCATCTAC 1348
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1081 ACATTGATTTTGAGGCTTCCATGGCTGATACACGTGCTCAGCATGCTCTTGGCCATCTAC 1140
Query 1349 AGGAATTCGCAAGTTTCATCCGTATCCTCGGGTGTTATCCAATGGATCTAGTCAGATAAC 1408
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGGAATTCACAAGTTTCATCCGTATCCTCGGGTGTTATCCAATGGATCTAGTCAGATAAC 1200
Query 1409 CGAGCAACTCTTCAATTGAT 1428
| ||||| ||| | ||||||
Sbjct 1201 CAAGCAAATCTCCTATTGAT 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5