BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11800.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920008 jgi|Araly1|920008|scaffold_101289.1 2109 0.0
> Ahg920008 jgi|Araly1|920008|scaffold_101289.1
Length=1375
Score = 2109 bits (1142), Expect = 0.0
Identities = 1309/1385 (95%), Gaps = 29/1385 (2%)
Strand=Plus/Plus
Query 7 GATAAA-AACTAATTAGGGTAAATGTCAACAACAATCCGATTTCTGAGAATTGTCACAAG 65
|||||| || ||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 1 GATAAAGAA--AATTAGGGTAAATGT---CAACAATCCGATTTCTCAGAATTCTCACAAT 55
Query 66 TCGAGCAA--T-G---TCG------TCG---TCTTGGTCCTGCAACAAATGTACTTTCCT 110
|||||||| | | ||| ||| |||||||| ||||||||||||||||||||
Sbjct 56 TCGAGCAATGTCGTCATCGTCTTCCTCGTCCTCTTGGTCATGCAACAAATGTACTTTCCT 115
Query 111 CAATTCTGCGTCTCAGAAACTCAATTGCATGATCTGCTTGGCTCCTGTATCTCTCCCTTC 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CAATTCTGCGTCTCAGAAACTCAATTGCATGATCTGCTTGGCTCCTGTATCTCTCCCTTC 175
Query 171 TTTGTCTCCTCCTCCACCTTCTCTCTCAATTTCCGCGAACGATGAAGCTAAATGGGCTTG 230
|| ||||||| | | |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 176 TTCGTCTCCT--T-CTCCTTCTCTCTCAATTTCCACGAACGATGAAGCTAAATGGGCGTG 232
Query 231 CAAGGCCTGTACTTTTTTGAACACGTACAAGAACTCAATCTGTGACGTCTGTGGAACACG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 233 CAAGGCCTGTACTTTTTTGAACACGTACAAGAACTCAATCTGTGACGTCTGTGGAACGCG 292
Query 291 ATCGCCAACGTCTTCTCTCTTGGGATTTCAGGATTTGACTGATTCGGGTCTCGAGAGTAA 350
|| ||||||||||| |||| |||| ||| | |||||||||||||||||||||||||||||
Sbjct 293 ATTGCCAACGTCTTGTCTCCTGGGCTTTGACGATTTGACTGATTCGGGTCTCGAGAGTAA 352
Query 351 CGACGCTGATTCCTCCGTCGGGTCTGTTTTCTTTCCTCTGCGGCGGTGTATCAAGCGTAA 410
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 353 CAACGCTGATTCCTCCGTCGGGTCTGTTTTCTTTCCTCTGCGGCGGTGTAGCAAGCGTAA 412
Query 411 AGCTATGGATGATGACGTCGTCGAGGTCGATGGTGCTTCTGTTGTTTGCTCTGAATCGCA 470
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGCTATGGATCATGACGTTGTCGAGGTCGATGGTGCTTCTGTTGTTTGCTCTGAATCGCA 472
Query 471 AGGTGTCATGAAGAAGAACAAAGAGATTGAAACGAAAGGGGTAGCTTCTGATTCAGGAAC 530
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 AGGTGTCATGAAGAAGAACAAAGAAATTGAAACGAAAGGGGTAGCTTCTGATTCAGGAAC 532
Query 531 ACCTTTAACTTGCTTGAAGATCTTGAGCTACAATGTTTGGTTTCGTGAAGACCTTGAGTT 590
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 533 ACCTTTAACTTGCTTGAAGATCTTAAGCTACAATGTTTGGTTTCGTGAAGACCTTGAGTT 592
Query 591 GAATCTAAGGATGAGAGCGATTGGTCATCTTATTCAGCTTCATTCTCCTCATCTCATATG 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 593 GAATCTAAGGATGAGAGCGATTGGTCACCTTATTCAGCTTCATTCTCCTCATCTCATATG 652
Query 651 TTTTCAGGAAGTCACTCCTGAGATATATGATATTTTCCGCAAGTCGAATTGGTGGAAAGC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TTTTCAGGAAGTCACTCCTGAGATATATGATATTTTCCGCAAGTCGAATTGGTGGAAAGC 712
Query 711 GTATTCTTGTTCTGTCTCAGTTGATGTGGCAGTTTCGAGAGGCTACTACTGCATGCTGTT 770
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 713 GTATTCTTGTTCTGTCTCAGTTGATGTGGCAGTTTCAAGAGGCTACTACTGCATGCTGTT 772
Query 771 GAGCAAGTTGGGAGTGAAATCTTTCAGCAGCAAAAGCTTTGGGAACTCGATAATGGGAAG 830
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AAGCAAGTTGGGGGTGAAATCTTTCAGCAGCAAAAGCTTTGGGAACTCGATAATGGGAAG 832
Query 831 AGAACTATCTATCGCAGAAGTTGAAGTTCCAGGGAGAAAGCCACTTGTTTTTGCAACTAG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AGAACTATCTATCGCAGAAGTTGAAGTTCCAGGGAGAAAGCCACTTGTTTTTGCAACTAG 892
Query 891 CCATCTTGAGAGTCCCTGTCCAGGTCCTCCAAAATGGGACCAAATGTTCAGTCGAGAACG 950
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CCATCTCGAGAGTCCCTGTCCAGGTCCTCCAAAATGGGACCAAATGTTCAGTCGAGAACG 952
Query 951 CGTTGAACAAGCCAAGGAGGCAATTGAGATTCTCAGACCTAATGCCAATGTGATATTCGG 1010
||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 953 CGTTGAACAAGCCAAAGAAGCAATCGAGATTCTCAGACCTAATACCAATGTGATATTCGG 1012
Query 1011 GGGAGACATGAACTGGTGC-GACAAGCTAGATGGGAAGTTTCCTTTGCCAGACAAATGGG 1069
|||||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1013 GGGAGACATGAACTGG-GATGACAAGCTAGATGGGAAATTTCCTTTGGCAGACAAATGGG 1071
Query 1070 TGGATGTTTGGGAGGTTTTGAAACCAGGTGATTTGGGTTTTACATATGACACAAAAGCAA 1129
| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1072 TCGATGTTTGGGAGGTTTTGAAACCAGGCGATTTGGGGTTTACATACGACACAAAAGCAA 1131
Query 1130 ACCCAATGTTGTCCGGTAACCGGGCATTGCAGAAACGGTTAGACCGGATTTTGTGTCGTC 1189
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1132 ACCCAATGTTGTCCGGCAACCGAGCATTGCAGAAACGGTTAGACCGGATTTTGTGTCGTC 1191
Query 1190 TGGATGATTACAAGCTTGGTGGAATCGAGATGGTTGGGAAAGAGGCCATTCCTGGTTTAT 1249
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1192 TGGATGATTACAAGCTTGGCGGAATCGAGATGGTTGGGAAAGAGGCGATTCCTGGTTTAT 1251
Query 1250 CATATGTA-AAAGAGAAGAAAGTGAGGGGTGACATTAAGAAGTTAGAGCTTCCGGTGTTG 1308
|||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1252 CATATG-AGAAAGAGAAGAAAGTGAGGGGTGAGATCAAGAAGTTAGAGCTTCCGGTGTTG 1310
Query 1309 CCTAGTGATCATTTCGGTCTGCTTGTAACCCTTTCGCCAAAATGAGATCAAA-CTATTCA 1367
|||||||||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||||
Sbjct 1311 CCTAGTGATCATTTCGGTCTGCTTTTAACCCTTTTGCCGAAATGAGGTCAAAACTATTCA 1370
Query 1368 GAGCT 1372
|||||
Sbjct 1371 GAGCT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5