BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11810.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929149 jgi|Araly1|929149|scaffold_301606.1 464 7e-130
Ahg929119 jgi|Araly1|929119|scaffold_301576.1 206 4e-52
> Ahg929149 jgi|Araly1|929149|scaffold_301606.1
Length=1237
Score = 464 bits (251), Expect = 7e-130
Identities = 549/681 (81%), Gaps = 68/681 (10%)
Strand=Plus/Plus
Query 1 ATGACGACGACGATGTCAACCCTTCCAGTGGTTTTGGTAGACGAGATTCTCGCTAGGGTT 60
||||||||||||||||||| ||||||| |||||||||||| |||||| || | ||||||
Sbjct 21 ATGACGACGACGATGTCAAATCTTCCAGAGGTTTTGGTAGAAGAGATTATCTCCAGGGTT 80
Query 61 CCCATTACATCTCTTAGATCACTCCGATCAACG-TGCAAGAAATGGGAGGCTTCATCGAA 119
||||||||||||||| ||||| ||||||||| | || || ||||||||||||| ||||||
Sbjct 81 CCCATTACATCTCTTGGATCATTCCGATCAA-GCTGTAAAAAATGGGAGGCTTTATCGAA 139
Query 120 AACCAATCTTGTAGGTGGT-AA--AGC------AACCGCAAGGAAAAGCAGTCACGTAGG 170
|||| ||||| |||||||| || ||| |||| ||||| ||||||| || ||||
Sbjct 140 AACCCATCTTTTAGGTGGTAAAGCAGCAGAAGTAACCACAAGG--AAGCAGTTAC-TAGG 196
Query 171 GTTTATCCTCA-TTGGTGACAAGATCTGTTCAATG-AA---G-----C-TGG-A-C-CTA 216
||||||||| | ||| ||||||||||||||| ||| || | | ||| | | | |
Sbjct 197 GTTTATCCT-AGTTGATGACAAGATCTGTTCGATGAAACTCGATCTACATGGAATCACCA 255
Query 217 AATGGCGGCGATGACTTTGTTGACACATCAGTGAATCAAGTAAGTG--C---AT-TTGAT 270
|| | ||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 256 AA-GACGGCGATGACTTTGTTGACACATCAGTGAATCAAGTAAGTGCACTTGATCTTGAT 314
Query 271 GGATTCG-CGATATCTCAACTCTTTCACTGCGACGGCTTATTGTTTTGCATCTCCAATAA 329
| ||| | ||||||||||| ||||||||||||||||||||||| | ||| | | |
Sbjct 315 GAATT-GTCGATATCTCAAATCTTTCACTGCGACGGCTTATTGCTATGC--GT-C--T-- 366
Query 330 CCACTACAGCAACTACACGCTCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGAT 389
| |||| | | | ||||||||| ||||||||||||||||| |||| ||||| |
Sbjct 367 ----T-CAGC-A--AGAGGCTCATGGTGTGTAACATGTACTTGGGACAAACGAGGTTTA- 417
Query 390 TCAAA-ACCGTAGCTTGTTCGAGAGTTATC-AGAACTTTTGC-TCGTATGCTTTCGG--A 444
||||| |||| ||||||||||||| | || | || | || | |||||||||||| |
Sbjct 418 TCAAACCCCGTCGCTTGTTCGAGAGAT-TCGATAAATCAGGCGT-GTATGCTTTCGGATA 475
Query 445 T-ATGATAGCAGCAAAAACCGTAACCACAAAATCTTGAGAAATAATTCTGTTTCTGGTGG 503
| |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 476 TGATGATAGCAGCAAAAACCGTAACCACAAAATCTTGAGAAACAAGTCTGTTGGTGGTGG 535
Query 504 TTATGAAATCTACAGTTTAAAATCCGATTCATGGAAAGATCTTAATGTTGATCTCGA-GA 562
||| |||||||| | ||| | ||||||||||||||| | |||||||||||||||||| ||
Sbjct 536 TTACGAAATCTATAATTTCAGATCCGATTCATGGAAGGTTCTTAATGTTGATCTCGAAGA 595
Query 563 A-ATCTATACATCTTTGG-CGACTAGGAAGCGTGTCTTTGAAGGGAAATGCTTACTTTCG 620
| || | ||| ||| | | || ||||||| ||||||||||||||||||||||||||
Sbjct 596 AGAT--ACACAGCTT-GATCAACAAGGAAGCTTGTCTTTGAAGGGAAATGCTTACTTTTT 652
Query 621 GGTTATAAAGGTAATTGAAGA 641
||| | |||| | |||||||
Sbjct 653 GGTGACAAAGACATTTGAAGA 673
Score = 446 bits (241), Expect = 2e-124
Identities = 416/498 (84%), Gaps = 21/498 (4%)
Strand=Plus/Plus
Query 660 TTTACTCTGTTTTGACTTCACAAGAGAGAGTTTTGGAAAGCTTCTGTCTCTGCCGTTTGA 719
||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
Sbjct 734 TTTACTCTGTTTTGACTTCACAACAGAGAGATTTGGACAGCTTCTGTCTCTGCCGTTTCA 793
Query 720 GTCT----TTGGGTGATGA---AG---GAGAAGGCATTATGGTTATATCTTGTGTTAGAG 769
||| || | |||||| || |||||| || | ||||| |||||||||||||||
Sbjct 794 CTCTGAAGTT-GATGATGACGGAGTTCGAGAAGACAATGTGGTTTTATCTTGTGTTAGAG 852
Query 770 ATGATCATCTTGCTGTGTTATATCAACGTG--AC-ACTTTAGGTATTTGGATTTCGACTG 826
|||| || ||||| |||||| ||||| ||| || || |||||||||||||||| ||||
Sbjct 853 ATGAGCAGCTTGCCGTGTTACATCAAAGTGACACGACAATAGGTATTTGGATTTCCACTG 912
Query 827 AGATCGAGCCCAACAAGGTGTCGTGGAGAGAGTTTTTGCAAGTGGACTTGGCGACGCTGG 886
||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 913 AGATCGAGCCCAATGCGGTGTCGTGGAGAGAGTTTTTGGAAGTGGACTTGACGACGGTTG 972
Query 887 ATGGTTTTCCGGATGTA-TTTATAGCTGGGAGATTCATCGTTGACGAGGAGAAGCAAGTC 945
||||||||||||||| | || | ||||||||| ||| |||||||||||||||||||||||
Sbjct 973 ATGGTTTTCCGGATG-ACTTCAAAGCTGGGAGCTTCTTCGTTGACGAGGAGAAGCAAGTC 1031
Query 946 GTTGTAGTTTTCGGTCAAGAGACAGAGTT-GGATCTCAACCACGGAAATGCTTTCATCTT 1004
| |||||||| | ||||||||| ||| || | ||||||| | | |||| |||| |
Sbjct 1032 GCCGTAGTTTTTGATCAAGAGACCGAGGCCGG-TGGCAACCAC--ACA-GCTTGCATCAT 1087
Query 1005 TGGAAGAGATGGATACTTCACCTCTTTTACCGTTGGAGATGCTCCGCCCGAAGACTTCAC 1064
||||| |||||||||||||| |||| | | ||||||||| ||||||| | |||||||
Sbjct 1088 TGGAAAAGATGGATACTTCAACTCTGTGAATGTTGGAGATATTCCGCCCCCATACTTCAC 1147
Query 1065 TTCTTATGTTCCAAGCTTAGTCTCATTGCAAATCGACAAGACGGGTAAAAGGAAAGCAAG 1124
||||||||||||||||||||| |||||||||||| | |||| ||| ||||| ||||||||
Sbjct 1148 TTCTTATGTTCCAAGCTTAGTGTCATTGCAAATCAAGAAGAAGGGCAAAAGAAAAGCAAG 1207
Query 1125 AGATGACTAGATTGTTTC 1142
|||| | ||||| |||||
Sbjct 1208 AGATTATTAGATGGTTTC 1225
> Ahg929119 jgi|Araly1|929119|scaffold_301576.1
Length=1282
Score = 206 bits (111), Expect = 4e-52
Identities = 318/412 (77%), Gaps = 38/412 (9%)
Strand=Plus/Plus
Query 226 GATGACTTT-GTTGA-CACATCAGTGAATCAAGTAAGTGCA-TTTGATGGATTCGCGATA 282
||||| ||| |||| || ||| || || |||| |||| | ||| | | |||| |||||
Sbjct 276 GATGA-TTTCATTGATCA-ATCTGTCAAGGAAGTGAGTGAACTTT-ACGAATTCTCGATA 332
Query 283 TCTCAACTCTTTCACTGCGACGGCTTATTGTTTTGCATCTCCAATAACCACTACAGCAAC 342
|||||| ||||||||||||||||||| ||| ||||| ||| |||| | ||| ||||| |
Sbjct 333 TCTCAAATCTTTCACTGCGACGGCTTGTTGCTTTGCGTCTTCAATGA-CAC--CAGCAGC 389
Query 343 TACACGCTCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGATTCAAA-ACCGT-A 400
| ||||||||||| |||||||||||||||||| |||||||| | || ||| |||| |
Sbjct 390 AAGACGCTCATGGTGTGTAACATGTACTTGGGGCAAACTAGGAGGGTT-AAAGCCCGTCA 448
Query 401 GCTTGTTCGAGAG-TTATC-AGAA-CTTTTGCTCGTATGCTTTCGGAT---ATGATAGCA 454
|||||||| || || || | || | || | |||||||| |||| ||||||||
Sbjct 449 -ATTGTTCGACAGATTCTCTA-AATCAGGTG-T-TTATGCTTTTGGATACGATGATAGC- 503
Query 455 GCA-AAAACCGTAACCACAAAATCTTGAGAAAT-AATTCTGTTTCTGGTGGTTATGAAAT 512
| | |||||||||||||||||||||||||||| || || | |||||||||||| ||
Sbjct 504 GAAGAAAACCGTAACCACAAAATCTTGAGAAACGAAA-CTAATGGTGGTGGTTATGAGAT 562
Query 513 CTAC-AGTTTAAAATCCGATTCATGGAAAGAT-CTTAATGTTGATCTCGA-GAA-AT-CT 567
|||| | |||| | ||||||||||||| | | ||| |||| | || ||| | | || |
Sbjct 563 CTACGATTTTAGA-TCCGATTCATGGAG-GCTTCTTGATGTCGTTCCCGACGGAGATAC- 619
Query 568 ATACATCTTTGGCGACTAGG-AAGCGTGTCTTTGAAGGGAAATGCTTACTTT 618
| | || ||||| || | |||| ||||||||||||||||||||||||||
Sbjct 620 A-A-AT-TTTGGTGAAAAACTAAGCTTGTCTTTGAAGGGAAATGCTTACTTT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5