BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11840.6
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920010 jgi|Araly1|920010|scaffold_101291.1 1639 0.0
> Ahg920010 jgi|Araly1|920010|scaffold_101291.1
Length=1088
Score = 1639 bits (887), Expect = 0.0
Identities = 1029/1093 (94%), Gaps = 27/1093 (2%)
Strand=Plus/Plus
Query 208 TTTCTAGAAACATGGCTGAGGCTTCTGATTTGTTGGAATGGCCTAAGAAGGATAACCGTC 267
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 11 TTTTTAGAAATATGGCTGAGGCTTCTGACTTGTTGGAATGGCCTAAGAAGGATAACCGTC 70
Query 268 GTTTTCTCCATGTTGTCTACCGCGTTGGTGATCTTGATCGCACCATTGAGTTTTACACTG 327
|||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 71 GTTTTCTCCATGTTGTTTACCGCGTTGGTGATCTTGATCGTACCATTGCGTTTTACACTG 130
Query 328 AGGT-CTTTGGTATGAAGCTGTTGAGGAAAAGAGATATCCCTGAGGAGAAGTATTCTAAT 386
| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 131 A-GTGCTTTGGTATGAAGCTGTTGAGGAAAAGAGATGTCCCTGAGGAGAAGTATTCTAAT 189
Query 387 GCTTTTCTTGGTTTTGGACCTGAAACATCTAACTTTGTTGTGGAGCTCACATATAACTAT 446
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 190 GCTTTTCTCGGTTTTGGACCTGAAACATCTAACTTCGTTGTGGAGCTCACATATAACTAT 249
Query 447 GGTGTTAGCTCATATGATATTGGAACTGGCTTTGGGCATTTTGCCATTTCAACTCAAGAT 506
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 250 GGTGTTAGCTCATATGATATTGGAACTGGATTTGGGCATTTTGCCATTTCAACTCAAGAT 309
Query 507 GTTTCCAAACTGGTTGAGAACGTCCGTGCCAAGGGTGGAAATGTGACTAGGGAACCTGGT 566
||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 310 GTTTCCAAACTGGTTGAGACCGTCCGTGCCAAGGGTGGAAATGTCAGTAGGGAACCTGGT 369
Query 567 CCAGTCAAAGGTGGAGGCAGTGTCATTGCGTTTGTGAAGGACCCTGATGGCTACACTTTT 626
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CCGGTCAAAGGTGGAGGCAGTGTCATTGCGTTTGTGAAGGACCCTGATGGCTACACTTTT 429
Query 627 GAGCTCATCCAGAGAGGTCCAACTCCTGAACCTTTCTGCCAAGTCATGCTTCGTGTTGGT 686
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 430 GAGCTCATCCAAAGAGGTCCAACTCCTGAACCATTCTGTCAAGTCATGCTTCGTGTTGGT 489
Query 687 GATCTCGACCGTGCCATCAAATTCTATGAAAAGGCCCTCGGGATGAGACTCTTGAGAAAG 746
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 490 GATCTCGACCGTGCCATCAAATTCTACGAAAAGGCCCTGGGGATGAGACTCTTGAGAAAG 549
Query 747 ATTGAGAGACCTGAGTACAAGTACACCATAGGCATGATGGGGTATGCTGAAGAATACGAG 806
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 550 ATTGAGAGACCTGAGTACAAGTACACCATAGGCATGATGGGATATGCTGAAGAATACGAG 609
Query 807 TCGATAGTTTTGGAGCTGACCTATAACTACGACGTGACTGAGTACACAAAGGGCAATGCA 866
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 610 TCGATAGTTTTGGAGCTGACCTATAACTACGGCGTGACTGAGTACACAAAGGGCAATGCA 669
Query 867 TATGCACAGATTGCAATAGGCACAGATGATGTGTACAAAAGCGGTGAAGTTATTAAGATA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TATGCACAGATTGCAATAGGCACAGATGATGTGTACAAAAGCGGTGAAGTTATTAAGATA 729
Query 927 GTCAACCAAGAGCTAGGAGGAAAGATCACTAGAGAAGCCGGACCTCTTCCTGGACTCGGC 986
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 730 GTCAACCAAGAGCTGGGAGGAAAGATCACTAGAGAACCCGGACCTCTTCCTGGACTCGGC 789
Query 987 ACCAAGATTGTCTCATTCCTTGATCCAGATGGCTGGAAAACGGTTTTGGTGGACAACAAA 1046
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ACCAAGATTGTCGCATTCCTTGATCCAGATGGCTGGAAAACGGTTTTGGTGGACAACAAA 849
Query 1047 GATTTTCTCAAGGAACTGGAATGAGAAGAGCGATGAATGAAGGTCGAGATCACAAAACCA 1106
|||||||| |||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 850 GATTTTCTGAAGGAACTGGAATGAGGAGAGCGATGA-TGT---TCGAGATCACAAAACCA 905
Query 1107 TAATAATAAAAATGTGATCATAAAATAAAAGGAA-GACTTAGAGTTTGATCTAAAATAAG 1165
||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||
Sbjct 906 TAATAATAAAAATGTGATCATGGAATAAA-GGAAAGACTTAGTGTTTGATCTAAAATAAG 964
Query 1166 AAGATGTGGTTTAGTTTGTGTCGTGCTATGTGTGTGTGCTCGTTTCTTTTGTCTTTGAGC 1225
| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct 965 ATGATGTGGTTAAGTTTGTGTCGTGCTATGTGTGTG--CTCGTTTCTTTTGTCC-----C 1017
Query 1226 TTAAAAGTTAAAACTCTAGTCTATATGGACCTGAATAAAAA-TATTTCCACCACCTTGAG 1284
|||| | |||| ||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1018 TTAA--GCTAAA-CTCTA-T------GGACCTGAATAAAAAATATTTCCACCACCTTGAG 1067
Query 1285 GTTTTGGTGTTTG 1297
|| ||| ||||
Sbjct 1068 CTTGAGGT-TTTG 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54583321085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5