BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11850.2

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471329 jgi|Araly1|471329|fgenesh2_kg.1__1283__AT1G11850.4         616    9e-176


> Ahg471329 jgi|Araly1|471329|fgenesh2_kg.1__1283__AT1G11850.4
Length=446

 Score =  616 bits (333),  Expect = 9e-176
 Identities = 418/455 (92%), Gaps = 21/455 (5%)
 Strand=Plus/Plus

Query  111  CTTATCTCCGAAGATACCCAATTCAAGGATGAAAAATCTTTCCTCGGAGGCGGTGGCAGC  170
            ||| |||||| |||||  | |||||||||||| |||||||||||||||||||| ||||||
Sbjct  4    CTTTTCTCCGGAGATA--C-ATTCAAGGATGATAAATCTTTCCTCGGAGGCGGCGGCAGC  60

Query  171  GGTGATGGCTTAGGGCTTGGCCTTGGTGGAGGAGCTGGTCTTGGTGGGCTTGGGATTGGG  230
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTGGTGGCCTAGGGCTTGGCCTTGGTGGAGGAGCTGGTCTTGGTGGGCTTGGGATTGGG  120

Query  231  GCTGGGATCGGCGCGGGAGCCGGACTAGGGTTAGGTGGAGGCGGTGGTGGACTCGGAGGT  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GCTGGGATCGGCGCGGGAGCCGGACTAGGGTTAGGTGGAGGCGGTGGTGGACTTGGAGGT  180

Query  291  GGTGGCGGTGGACTCCTCGGTGGAGGCGGCTTTGGGGGAGGAGCCGGTGGCGGACTCGGT  350
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  GGTGGCGGTGGACTCCTCGGTGGAGGCGGCTTTGGCGGAGGAGCCGGTGGCGGACTCGGT  240

Query  351  GGCCTTCCTTGAACGTATTGACAAGTGTGCGTGTGAGAGCTGATTCTCAGCTTATTACTA  410
            |||||||||||||||||||| ||||||||||||  |||||||| |||||||||||||| |
Sbjct  241  GGCCTTCCTTGAACGTATTGTCAAGTGTGCGTG--AGAGCTGACTCTCAGCTTATTAC-A  297

Query  411  -ATTAATTAAGTTACTTTCATTCTCTTAATAAAATCTAGAGGGTTTGAATTTCGGATTTC  469
             |  |||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||
Sbjct  298  CA--AATTAAGTTACTTTCATTGTCTTAATAAAATATAGAGGGTATGAATTT-GGATTTC  354

Query  470  TTCAGCTTTAATTTAAACTTCAATATTTGAACCA-AAAAGGTCTT-GCTAC----T--AG  521
               |||||| ||||||||||||||||| |||||| |||||||||| |||||    |  ||
Sbjct  355  ---AGCTTTGATTTAAACTTCAATATTAGAACCATAAAAGGTCTTAGCTACGCCGTTCAG  411

Query  522  AGGTAATGCTCGTAATCGTATTATGTGTAACGCCG  556
            | |||||||||||||||||||||||||||||||||
Sbjct  412  ATGTAATGCTCGTAATCGTATTATGTGTAACGCCG  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5