BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11870.2
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471334 jgi|Araly1|471334|fgenesh2_kg.1__1288__AT1G11870.2 2396 0.0
> Ahg471334 jgi|Araly1|471334|fgenesh2_kg.1__1288__AT1G11870.2
Length=1702
Score = 2396 bits (1297), Expect = 0.0
Identities = 1595/1734 (92%), Gaps = 39/1734 (2%)
Strand=Plus/Plus
Query 50 ATGGGTTTACACAAATTGAGACTCGCAGCGGCGGTTCCTGTAACCTTCTCCTCTCG-C-C 107
||| ||||||||||||||||||| | || || |||||| || ||||||| ||||| | |
Sbjct 1 ATGAGTTTACACAAATTGAGACT--C-GCTGCAGTTCCTATAGCCTTCTCTTCTCGTCTC 57
Query 108 -TCTTCCTCAAGCCATTTACCAATACTCTTACCCTAGGTTTGTTTTCCCGCCATCTTCAA 166
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 TTCTTCCTCAAGCCATTTCCCAATACTCTAACCCTAGGTTTGTTTTCCCGCCATCTTCAA 117
Query 167 CCCCGTAATAAGCCTCTCCTTGTCAGAGCTTTCTCCGCTTCCGCCGCCGTACAAGATATT 226
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCCC---ATAAGCCTCTCCTAGTCAGAGCTTTCTCCGCTTCCGCCGCCGTACAAGATATT 174
Query 227 CCGGCCACACAGACCTCCGATTCCTCTGTAGCAGCAAGGCCTCTGTGGAAGGCAGCGATT 286
|||||||| ||| |||| |||||||| | || | ||||||| |||||| |||||||||
Sbjct 175 CCGGCCACGCAGGCCTCAGATTCCTC--T-GC-G--AGGCCTCAGTGGAAAGCAGCGATT 228
Query 287 GATTTCAAATGGATAAGGGACAATAAGGAAGCAGTCGAAATCAACATCAGGAACAGGAAT 346
||||||||||||||||| || ||||||||||||||| |||||||||| | |||| | |||
Sbjct 229 GATTTCAAATGGATAAGAGATAATAAGGAAGCAGTCAAAATCAACATTAAGAACCGAAAT 288
Query 347 TCGAATGCTAATTTGGAAGCTGTGCTCCAGCTTTATGAGAACATGGTCAATCTCCAAAAG 406
|||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 289 TCGAATGCTAATTTGGAAGCAGTGCTTGAGCTTTACGAGAACATGGTCAATCTCCAAAAG 348
Query 407 GAAGTTGAG-AGGCTTCGTGAGGAAAGAAACAACGTTGCCAAAAAGATGAAAGGGAAGCT 465
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 349 GAAGTTGAGCA-GCTTCGTGAGGAAAGAAACAACGTTGCCAAGAAGATGAAAGGGAAGCT 407
Query 466 GGAGCCATCAGAACGTGAGAGACTCGTAGAAGAAGGTAAAAATCTTAAGGAAAGTCTTGT 525
||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 408 GGAACCATCACAACGTGAGACACTCGTACAAGAAGGTAAAAATCTTAAGGAAAGTCTTGT 467
Query 526 TACTCTGGAAGAAGACCTCGTGAAGCTTAAAGATGAGCTCCAACATGTAGCACAGTCTAT 585
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 468 AACTCTGGAGGAAGACCTTGTGAAGCTTAAAGATGAGCTGCAACATGTAGCACAGTCTAT 527
Query 586 ACCGAATATGACTCACCCTGATGTTCCTGTTGGAGGAGAGGATTCATCGGCAATTAGACA 645
||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 528 ACCAAATATGACTCACCCTGATGTTCCTATTGGAGGAGAGGATTCATCGGCAGTTAGAAA 587
Query 646 GGAGGTTGGTAGTCCACGTGAGTTTAGTTTTCCAATAAAGGATCATCTTCAGCTTGGGAA 705
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 588 GGAGGTTGGTAGTCCACGTGAGTTTAGTTTTCCAATCAAGGATCATCTTCAGCTTGGGAA 647
Query 706 GGATCTTGATCTCATTGATTTTGACTCTGCTGCTGAGGTAAGTGGTTCAAAGTTTTTCTA 765
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 648 GGATCTTGATCTCATTGATTTTGACTCTGCTGCAGAGGTAAGTGGTTCAAAATTCTTCTA 707
Query 766 TCTGAAGAATGAGGCAGTTCTATTGGAGATGGCTCTTCTTAATTGGACATTATCACAAGT 825
| |||| |||||||||||| ||||||||||||| || |||||||||||| ||||||||||
Sbjct 708 TTTGAAAAATGAGGCAGTTTTATTGGAGATGGCGCTCCTTAATTGGACACTATCACAAGT 767
Query 826 CATGAAGAAGGGTTATACCCCCCTAACGACTCCTGAAATCGTGAGATCTTCTATTGTTGA 885
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 768 CATGAAGAAGGGTTTTACACCCCTAACGACCCCTGAAATCGTGAGATCTTCTATTGTTGA 827
Query 886 GAAATGCGGTTTCCAACCTCGTGGGGATAATACTCAGGTCTATTCGATAGATGGAACTGA 945
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 828 GAAATGCGGTTTCCAACCTCGTGGAGATAATACTCAGGTTTATTCTATAGATGGAACTGA 887
Query 946 CCAATGTCTCATTGGTACCGCTGAAATTCCCGTAGGAGGAATACACATGGATTCTATTCT 1005
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 888 CCAATGTCTCATTGGTACTGCTGAAATTCCAGTAGGAGGAATCCACATGGACTCTATTCT 947
Query 1006 TCTTGAATCAGCATTGCCTTTGAAATATATAGCATTCTCTCATTGCTTCCGTACTGAAGC 1065
|||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 948 TCTTGAGTCGGCATTACCTTTGAAATATATAGCGTTCTCTCATTGCTTCCGTACTGAAGC 1007
Query 1066 GGGTGCTGCTGGCGCTGCCACAAAAGGTCTTTACCGAGTTCATCAGTTCAGCAAAGCAGA 1125
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GGGTGCAGCTGGCGCTGCCACAAAAGGTCTTTACCGAGTTCATCAGTTCAGCAAAGCAGA 1067
Query 1126 GATGTTCGTCATATGCCAACCTGAAGATAGTGAATCCTTCCACCAAGAACTCATTCAGAT 1185
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AATGTTTGTCATATGCCGACCTGAAGATAGTGAATCCTTCCACCAAGAACTCATTCAGAT 1127
Query 1186 CGAAGAAGATTTATTCACTTCTCTAGGATTACACTTTAAAACATTGGATATGGCCACAGC 1245
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1128 TGAAGAAGATTTGTTCACTTCCCTAGGATTACACTTCAAAACATTGGATATGGCCACAGC 1187
Query 1246 CGATTTAGGCGCTCCAGCATATCGCAAGTTTGACATTGAAGCATGGATGCCCGGTTTAGG 1305
||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1188 GGATTTAGGCGCTCCAGCTTACCGCAAGTTTGACGTTGAAGCATGGATGCCCGGTTTAGG 1247
Query 1306 ACGATTTGGCGAGATATCAAGCGCATCAAACTGCACAGATTACCAAAGTCGAAGACTGGG 1365
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1248 ACGATTTGGCGAGATATCAAGCGCATCAAACTGCACGGATTACCAAAGTCGGAGACTGGG 1307
Query 1366 AATCCGTTACCGCCCATCTGAACCGCCTCAGACGGGTCCTAAGAAAGGGAAAGCGAATCT 1425
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1308 AATCCGTTACCGCCCATCTGAACCACCTCAGACGGGTCCTAAGAAAGGTAAAGCGAATCT 1367
Query 1426 TCCAGCCACTAAGTTTGTCCACACTCTAAACGCGACTGCGTGTGCCG-TCCCAAGGATGA 1484
|||||| |||||||| ||||||||||||||||| || || ||||| | |||| |||||||
Sbjct 1368 TCCAGCTACTAAGTTCGTCCACACTCTAAACGCAACGGCATGTGC-GATCCCGAGGATGA 1426
Query 1485 TGGTGTGTTTGCTGGAGAATTACCAGCAAGAAGATGGATCTGTGGTGATCCCTGAGCCCC 1544
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TGGTGTGTTTACTGGAGAATTACCAGCAAGAAGATGGATCTGTGGTGATCCCTGAGCCCC 1486
Query 1545 TGAGGCCTTTCATGGGAGGCATTGAACTCATCAAACCCAAGCACAAGTAGTTTTTA-ATG 1603
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1487 TTAGGCCTTTCATGGGAGGCATTGAACTCATCAAACCCAAGCTCAAGTAGTTTTTTTATA 1546
Query 1604 GTTAGCTCTTTGCAATTCTTGCTGTGATTCCTCTTGTACTTGAGGTTTTGTTCATTATAC 1663
||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 1547 GTTAGATCTTTGCAATTCTTGCTGTTATTCCTCTTGTACTTGAAATTT-GTTCATTATAC 1605
Query 1664 TTTTCACAGGCGCTGAGTTTTTTGTGTTCTTGTCTCAGAACATACCATTTATAGTTTATA 1723
||| | | | |||||||| ||||| ||||||| ||||||||||||||
Sbjct 1606 TTT-----G----T---T-----GTGTTCTTTTCTCAAAACATACAATTTATAGTTTATA 1648
Query 1724 TCATCATAACCGA-TGTTCTTTGATTCAATAATAACGAAAGGGAAGTATACATT 1776
||||||||||||| ||||||||||||| ||||||| | ||||||| ||||||||
Sbjct 1649 TCATCATAACCGAATGTTCTTTGATTCGATAATAATGGAAGGGAAATATACATT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5