BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11880.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471336 jgi|Araly1|471336|fgenesh2_kg.1__1290__AT1G11880.1 2235 0.0
> Ahg471336 jgi|Araly1|471336|fgenesh2_kg.1__1290__AT1G11880.1
Length=1567
Score = 2235 bits (1210), Expect = 0.0
Identities = 1453/1569 (93%), Gaps = 21/1569 (1%)
Strand=Plus/Plus
Query 27 AAAATCACAAATCGTCACCGGACTCTTGCAATCGAGAACCATCTGTCGCCTTTTTATACT 86
|||||||||||||||||||||| ||||||||||||||| |||||| || |||||||| ||
Sbjct 2 AAAATCACAAATCGTCACCGGATTCTTGCAATCGAGAATCATCTGCCGACTTTTTATTCT 61
Query 87 CGAATACGAGCTCGTGATCAATGGCGAAAGCTTTGGAATCAAACTCGAAATCAAGGAAAG 146
||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||
Sbjct 62 CGAATACGAGCTCGTGATCAATGGCCATTTCTATGGAATCAAGCTCGAAATCAAGGAAAG 121
Query 147 AAACCATCTTGATCAAATACGCCATCTTCTCGCGACTTCTCGTTCTCTTCTTAACCATTT 206
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 122 AAACCGTCTTGATAAAATACGCCATCTTCTCGCGACTTCTCGTTCTGTTCTTAACCATTT 181
Query 207 TGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTGAATCCTCCTTGCTTGT 266
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 TGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTAAATCCTCCTTGCTTGT 241
Query 267 ATCACAAAGAAGATTCTTTTCCGTTTCTAGTAGCCAATGCAGCTTCGAGATCCCTTGAGA 326
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |
Sbjct 242 ATCACAAAGAAGATTCTCCTCCATTTCTAGTAGCCAATGCAACTTCGAGATCCCTTGAAA 301
Query 327 ACAGTGTTGTCTGGGACAGTGTTTATTTTCTCCGAATCACAGAGTGTGGCTATGAGTATG 386
|||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 302 ACAGCGTTGTTTGGGACAGTGTGTATTTTCTCCGAATCACCGAGTGTGGCTATGAGTATG 361
Query 387 AGCAGACTTACGCCTTCTTGCCTCTGCTTCCTTTCTTCATCTCGCTTCTCTCTCGCACAG 446
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 362 AGCAGACTTATGCCTTCTTGCCTCTGCTTCCCTTCTTCATCTCGCTTTTCTCTCGCACAG 421
Query 447 TTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTTCA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTACA 481
Query 507 CTGTTAGTAACTTGGCGTTCATATTTGCTGCTATCTATCTATTTAGGGTTTCAGTTATTA 566
||| || ||||| || |||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 482 TTGTCAGCAACTTAGCCTTCATATTAGCTGCTATCTATCTATTCAGGCTTTCAGTTATTA 541
Query 567 TCTTGAAGGA-TACTGAAGCATCATTCAGAGCTTCGATTATCTTCTGTTTCAATCCGGCG 625
|||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 542 TCTTGAAGGACT-CTGAAGCATCATTCAGAGCTTCGATTGTGTTCTGTTTCAATCCGGCG 600
Query 626 TCCATATTTTATTCGTCAATATATTCAGAAAGTTTGTATGCTCTTTTCTCTATTGGAGGA 685
|||||||| |||||||||||||||||||| ||| | ||||||||||| || ||||||||
Sbjct 601 TCCATATTCTATTCGTCAATATATTCAGAGAGTCTATATGCTCTTTTTTCAATTGGAGGC 660
Query 686 GTGTATCACTTGTTATCTGGTACCAGCAATGTAGGCGTTCTTTGGTTTGCTCTCTCAGGC 745
||||||||||||||||||||||| |||||||||| |||||| ||| |||| ||||| ||
Sbjct 661 GTGTATCACTTGTTATCTGGTACAAGCAATGTAGCCGTTCTCTGGCTTGCACTCTCTGGT 720
Query 746 TGTGCAAGGTCCAATGGAATTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGA 805
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTGCAAGGTCTAATGGAGTTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGA 780
Query 806 GCATATGAAGCTTTATATCAGAAACGGCGTGC-T-T--A--TT-TA-G-------CTATG 850
|||||||||||||||||||||||| |||| | | | | || || | |||||
Sbjct 781 GCATATGAAGCTTTATATCAGAAAAGGCGCACGTATGTAAGTTATAAGTATTTGGCTATG 840
Query 851 CAGGTTTTTATTGCTGGATTTCTTAGATGCATATGCATTTGTCTTCCTTTTGTCGCATTT 910
||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 841 CAGATTTTGGTTGCTGGATTTCTTAGATGCGTATGCATTTGTCTTCCTTTTGTCGCCTTT 900
Query 911 CAAGCATACGGATACTATAACATCTGCCATGGACATACGCGTGATGAAGTGAGGCCTTGG 970
||||||||||||||||||||| | || ||||||| ||| | ||||||| |||||||||||
Sbjct 901 CAAGCATACGGATACTATAACCTTTGTCATGGACGTACACTTGATGAAATGAGGCCTTGG 960
Query 971 TGCAAAGGAAGGATTCCGTTGCTGTATAACTTCATTCAAAGTCATTATTGGGGAGTAGGT 1030
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 TGCAAAGGAAGGATACCTTTGCTGTACAACTTCATTCAAAGTCATTATTGGGGAGTAGGT 1020
Query 1031 TTCCTTAA-ATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCT 1089
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCCT-AAGATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCT 1079
Query 1090 CTCTTTAGCTGTGTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATATC 1149
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 CTCTTTAGCTGTTTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATTTC 1139
Query 1150 GCTGGGGTTTCAAGCCACCGAGAAAGAAAAGAGATCTGCTGCCAGA-CTTTATTCTCTGA 1208
|||||| |||||||| |||||||||||||||||||||| ||| || |||||||||||||
Sbjct 1140 GCTGGGTTTTCAAGCTACCGAGAAAGAAAAGAGATCTGTTGC-AGGGCTTTATTCTCTGA 1198
Query 1209 AGGATGCAGTTGAACCAAGTGTTAAAACTTCAACAAATGAAGGAAACCATGACATTAGGC 1268
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |
Sbjct 1199 AGGATGCAGTTGAACCAAATGTTAAAACTTCAACAAATGAAGGAAACCGTGACATCAGAC 1258
Query 1269 AGCGGAAACCTAGCAGTAAGAAGGATGTGACTGGGACCAAAGTGGCTCCAGAAAAATCAG 1328
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 AGCGGAAACCCAGCAGTAAGAAGGATGTGACTGTGACCAAAGTGGCTCCAGAAAAATCAG 1318
Query 1329 GATACCTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGAGTTTTATGGTAACCACGG 1388
||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 1319 GATACTTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGGGTTTGATGGCAACCACGG 1378
Query 1389 CGTTCTTCATCATGCATGTCCAGGTTGCAACAAGGTTCTTGTCAGCAAGCCCTCCACTTT 1448
| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1379 CATTCTTCATCATGCATGTTCAGGTTGCAACACGGTTCTTGTCAGCAAGCCCTCCACTTT 1438
Query 1449 ACTGGTTTGCATCGTCTTTGATTGGATCTCCAAAACATAGTAAATGGGGGTACTTGATAT 1508
|||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 1439 ACTGGTTTGCATCGTCTTTGATTGCATCTCCAGAACATAGTAAATGGGGATACTTGATAT 1498
Query 1509 GGTCATATTGTGCAGCCTATATCCTTCTTGGTACTTTGCTCTTCTCAAACTTTTATCCCT 1568
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1499 GGTCATATTGTGCAGCCTATATCCTTCTTGGCACTTTGCTCTTCTCAAACTTTTATCCCT 1558
Query 1569 TCACTTGAT 1577
|||||||||
Sbjct 1559 TCACTTGAT 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5