BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11880.1 Length=1780 Score E Sequences producing significant alignments: (Bits) Value Ahg471336 jgi|Araly1|471336|fgenesh2_kg.1__1290__AT1G11880.1 2235 0.0 > Ahg471336 jgi|Araly1|471336|fgenesh2_kg.1__1290__AT1G11880.1 Length=1567 Score = 2235 bits (1210), Expect = 0.0 Identities = 1453/1569 (93%), Gaps = 21/1569 (1%) Strand=Plus/Plus Query 27 AAAATCACAAATCGTCACCGGACTCTTGCAATCGAGAACCATCTGTCGCCTTTTTATACT 86 |||||||||||||||||||||| ||||||||||||||| |||||| || |||||||| || Sbjct 2 AAAATCACAAATCGTCACCGGATTCTTGCAATCGAGAATCATCTGCCGACTTTTTATTCT 61 Query 87 CGAATACGAGCTCGTGATCAATGGCGAAAGCTTTGGAATCAAACTCGAAATCAAGGAAAG 146 ||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||| Sbjct 62 CGAATACGAGCTCGTGATCAATGGCCATTTCTATGGAATCAAGCTCGAAATCAAGGAAAG 121 Query 147 AAACCATCTTGATCAAATACGCCATCTTCTCGCGACTTCTCGTTCTCTTCTTAACCATTT 206 ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 122 AAACCGTCTTGATAAAATACGCCATCTTCTCGCGACTTCTCGTTCTGTTCTTAACCATTT 181 Query 207 TGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTGAATCCTCCTTGCTTGT 266 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 182 TGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTAAATCCTCCTTGCTTGT 241 Query 267 ATCACAAAGAAGATTCTTTTCCGTTTCTAGTAGCCAATGCAGCTTCGAGATCCCTTGAGA 326 ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| | Sbjct 242 ATCACAAAGAAGATTCTCCTCCATTTCTAGTAGCCAATGCAACTTCGAGATCCCTTGAAA 301 Query 327 ACAGTGTTGTCTGGGACAGTGTTTATTTTCTCCGAATCACAGAGTGTGGCTATGAGTATG 386 |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 302 ACAGCGTTGTTTGGGACAGTGTGTATTTTCTCCGAATCACCGAGTGTGGCTATGAGTATG 361 Query 387 AGCAGACTTACGCCTTCTTGCCTCTGCTTCCTTTCTTCATCTCGCTTCTCTCTCGCACAG 446 |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 362 AGCAGACTTATGCCTTCTTGCCTCTGCTTCCCTTCTTCATCTCGCTTTTCTCTCGCACAG 421 Query 447 TTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTTCA 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 422 TTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTACA 481 Query 507 CTGTTAGTAACTTGGCGTTCATATTTGCTGCTATCTATCTATTTAGGGTTTCAGTTATTA 566 ||| || ||||| || |||||||| ||||||||||||||||| ||| |||||||||||| Sbjct 482 TTGTCAGCAACTTAGCCTTCATATTAGCTGCTATCTATCTATTCAGGCTTTCAGTTATTA 541 Query 567 TCTTGAAGGA-TACTGAAGCATCATTCAGAGCTTCGATTATCTTCTGTTTCAATCCGGCG 625 |||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 542 TCTTGAAGGACT-CTGAAGCATCATTCAGAGCTTCGATTGTGTTCTGTTTCAATCCGGCG 600 Query 626 TCCATATTTTATTCGTCAATATATTCAGAAAGTTTGTATGCTCTTTTCTCTATTGGAGGA 685 |||||||| |||||||||||||||||||| ||| | ||||||||||| || |||||||| Sbjct 601 TCCATATTCTATTCGTCAATATATTCAGAGAGTCTATATGCTCTTTTTTCAATTGGAGGC 660 Query 686 GTGTATCACTTGTTATCTGGTACCAGCAATGTAGGCGTTCTTTGGTTTGCTCTCTCAGGC 745 ||||||||||||||||||||||| |||||||||| |||||| ||| |||| ||||| || Sbjct 661 GTGTATCACTTGTTATCTGGTACAAGCAATGTAGCCGTTCTCTGGCTTGCACTCTCTGGT 720 Query 746 TGTGCAAGGTCCAATGGAATTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGA 805 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TGTGCAAGGTCTAATGGAGTTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGA 780 Query 806 GCATATGAAGCTTTATATCAGAAACGGCGTGC-T-T--A--TT-TA-G-------CTATG 850 |||||||||||||||||||||||| |||| | | | | || || | ||||| Sbjct 781 GCATATGAAGCTTTATATCAGAAAAGGCGCACGTATGTAAGTTATAAGTATTTGGCTATG 840 Query 851 CAGGTTTTTATTGCTGGATTTCTTAGATGCATATGCATTTGTCTTCCTTTTGTCGCATTT 910 ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 841 CAGATTTTGGTTGCTGGATTTCTTAGATGCGTATGCATTTGTCTTCCTTTTGTCGCCTTT 900 Query 911 CAAGCATACGGATACTATAACATCTGCCATGGACATACGCGTGATGAAGTGAGGCCTTGG 970 ||||||||||||||||||||| | || ||||||| ||| | ||||||| ||||||||||| Sbjct 901 CAAGCATACGGATACTATAACCTTTGTCATGGACGTACACTTGATGAAATGAGGCCTTGG 960 Query 971 TGCAAAGGAAGGATTCCGTTGCTGTATAACTTCATTCAAAGTCATTATTGGGGAGTAGGT 1030 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct 961 TGCAAAGGAAGGATACCTTTGCTGTACAACTTCATTCAAAGTCATTATTGGGGAGTAGGT 1020 Query 1031 TTCCTTAA-ATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCT 1089 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTCCT-AAGATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCT 1079 Query 1090 CTCTTTAGCTGTGTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATATC 1149 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1080 CTCTTTAGCTGTTTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATTTC 1139 Query 1150 GCTGGGGTTTCAAGCCACCGAGAAAGAAAAGAGATCTGCTGCCAGA-CTTTATTCTCTGA 1208 |||||| |||||||| |||||||||||||||||||||| ||| || ||||||||||||| Sbjct 1140 GCTGGGTTTTCAAGCTACCGAGAAAGAAAAGAGATCTGTTGC-AGGGCTTTATTCTCTGA 1198 Query 1209 AGGATGCAGTTGAACCAAGTGTTAAAACTTCAACAAATGAAGGAAACCATGACATTAGGC 1268 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || | Sbjct 1199 AGGATGCAGTTGAACCAAATGTTAAAACTTCAACAAATGAAGGAAACCGTGACATCAGAC 1258 Query 1269 AGCGGAAACCTAGCAGTAAGAAGGATGTGACTGGGACCAAAGTGGCTCCAGAAAAATCAG 1328 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1259 AGCGGAAACCCAGCAGTAAGAAGGATGTGACTGTGACCAAAGTGGCTCCAGAAAAATCAG 1318 Query 1329 GATACCTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGAGTTTTATGGTAACCACGG 1388 ||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||||| Sbjct 1319 GATACTTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGGGTTTGATGGCAACCACGG 1378 Query 1389 CGTTCTTCATCATGCATGTCCAGGTTGCAACAAGGTTCTTGTCAGCAAGCCCTCCACTTT 1448 | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 1379 CATTCTTCATCATGCATGTTCAGGTTGCAACACGGTTCTTGTCAGCAAGCCCTCCACTTT 1438 Query 1449 ACTGGTTTGCATCGTCTTTGATTGGATCTCCAAAACATAGTAAATGGGGGTACTTGATAT 1508 |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| Sbjct 1439 ACTGGTTTGCATCGTCTTTGATTGCATCTCCAGAACATAGTAAATGGGGATACTTGATAT 1498 Query 1509 GGTCATATTGTGCAGCCTATATCCTTCTTGGTACTTTGCTCTTCTCAAACTTTTATCCCT 1568 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1499 GGTCATATTGTGCAGCCTATATCCTTCTTGGCACTTTGCTCTTCTCAAACTTTTATCCCT 1558 Query 1569 TCACTTGAT 1577 ||||||||| Sbjct 1559 TCACTTGAT 1567 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66810289730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5