BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11890.1

Length=1094
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920014 jgi|Araly1|920014|scaffold_101295.1                       1127    0.0  


> Ahg920014 jgi|Araly1|920014|scaffold_101295.1
Length=697

 Score = 1127 bits (610),  Expect = 0.0
 Identities = 661/686 (96%), Gaps = 2/686 (0%)
 Strand=Plus/Plus

Query  128  GGAGAAGTA-ATAAGGCAAAGATGGTGAAAATGACATTGATAGCTCGTGTTACTGATGGG  186
            ||||||| |  |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct  1    GGAGAAG-ATTTAAGGCAAAGATGGTGGAAATGACATTGATAGCTCGTGTTACTGACGGG  59

Query  187  TTACCTCTAGCTGAGGGGCTCGATGATGGACGTGACTTACCGGATTCAGATATGTATAAA  246
            || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| 
Sbjct  60   TTGCCTCTAGCAGAGGGGCTCGATGATGGACGCGACTTACCAGATTCAGATATGTATAAG  119

Query  247  CAACAGGTCAAAGCTTTGTTTAAGAATCTGTCCAGAGGTCAAAATGACGCTTCAAGAATG  306
            ||||| ||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct  120  CAACAAGTCAAAGCTCTGTTCAAGAATCTTTCCAGAGGTCAAAATGAGGCTTCAAGAATG  179

Query  307  TCCGTTGAAACTGGCCCCTATGTTTTCCATTACATCATAGAAGGACGTGTTTGCTACTTG  366
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TCGGTTGAAACTGGCCCCTATGTTTTCCATTACATCATAGAAGGACGTGTTTGCTACTTG  239

Query  367  ACAATGTGTGACCGCTCTTACCCAAAGAAACTCGCTTTCCAATACCTGGAAGATCTCAAG  426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  ACAATGTGTGACCGCTCTTACCCAAAGAAACTCGCTTTCCAATACCTGGAAGATCTCAAG  299

Query  427  AATGAATTTGAACGTGTCAATGGGCCTAACATTGAAACAGCTGCTCGGCCTTATGCCTTT  486
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  300  AATGAATTTGAACGTGTCAATGGACCTAACATTGAAACAGCTGCTCGGCCTTATGCCTTT  359

Query  487  ATTAAATTTGATACATTCATACAGAAAACCAAGAAACTGTACCAAGACACTCGTACGCAA  546
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  360  ATTAAATTTGATACATTCATACAGAAAACCAAGAAACTGTACCAAGACACTCGTACACAA  419

Query  547  CGAAACATCGCCAAGTTGAATGATGAACTCTATGAGGTTCATCAAATAATGACCCGGAAT  606
            || || || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  420  CGGAATATTGCCAAGTTGAATGATGAACTCTATGAGGTTCATCAAATAATGACGCGGAAT  479

Query  607  GTGCAAGAAGTCTTAGGTGTTGGTGAAAAGCTGGACCAGGTGAGCGAGATGTCGAGCCGG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GTGCAAGAAGTCTTAGGTGTTGGTGAAAAGCTGGACCAGGTGAGCGAGATGTCGAGCCGG  539

Query  667  TTAACATCTGAATCTCGTATATATGCTGATAAGGCTAAAGATTTGAACCGTCAGGCTTTG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  540  TTAACATCTGAATCTCGTATATATGCTGATAAGGCTAAAGATTTGAACCGTCAGGCTTTG  599

Query  727  ATCCGAAAATGGGCACCAGTCGCAATTGTGTTCGGTGTAGTCTTCCTCCTTTTCTGGGTC  786
            ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  600  ATCCGGAAATGGGCACCAGTCGCAATTGTCTTCGGTGTAGTCTTCCTCCTTTTCTGGGTC  659

Query  787  AAGAACAAGCTATGGTaaaaaaaaaa  812
            |||| |||||||||||||||||||||
Sbjct  660  AAGACCAAGCTATGGTAAAAAAAAAA  685



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40753398273


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5