BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11900.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471338 jgi|Araly1|471338|fgenesh2_kg.1__1292__AT1G11900.1 1694 0.0
> Ahg471338 jgi|Araly1|471338|fgenesh2_kg.1__1292__AT1G11900.1
Length=1160
Score = 1694 bits (917), Expect = 0.0
Identities = 1084/1165 (93%), Gaps = 10/1165 (1%)
Strand=Plus/Plus
Query 40 TTACCGAGGAAGATGATGAAGTGGTCGATCGTTAAGAGAATCCCCGTCTATGGAGGTTCC 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTACCGAGGAAGATGATGAAGTGGTCGATCGTTAAGAGAATCCCCGTCTATGGAGGTTCC 60
Query 100 TTCATTTCTATGAAACATATGATGTTAGTTCCAGCTGATTTGAGCTGGAGCTGCTCGTTC 159
|||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 61 TTCACTTCTTTGAAACATATGCTGTTAGCTCCAGCTGATTTGAGCTGGAGCTGCTCGTTC 120
Query 160 TCTGGTATGCACTCTTTGATAAACACTGGAGAAGAAGACGAGGAAGAACTCTTGAAGAAG 219
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 121 TCTGGTATGCACTCTTTGATAAACACAGGAGAAGAAGATGATGAAGAACTCTTGAAGAAG 180
Query 220 ATCGTTAACCATAGTGAAAGTGGTTCAAAGATCATCAGCAAAATCGATTATACGAATCTT 279
|| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 181 ATAGTTAACCAGAGTGAAAGTGGTTCGAAGATCATCAGCAAAGTCGATTATACGAATCTT 240
Query 280 GTTGAGAAGTTTACAAGAGATGGAAATCTCTCTGGAGCAT-ATGACTTGTTACAGTCTTT 338
|||||||||| |||||||||||||||||| |||| || | |||| |||| ||||| ||
Sbjct 241 GTTGAGAAGTATACAAGAGATGGAAATCTATCTGCCGC-TAATGAGTTGTGGCAGTCCTT 299
Query 339 ACAAGAAAAGAACATATGTTTGCCTATTTCGGTTTTCAAGAACCTTCTTGCAGCG-GCGG 397
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| | ||||
Sbjct 300 ACAAGACAAGAACATATGCTTGCCTATTTCGGTTTTCAAGAACCTACTTGCAG-GAGCGG 358
Query 398 GTGAGCTGAACGATATGAAGCTTTCTTGTAGAGTCTTCAGAGAGGTCTTGATCTTGCCGG 457
||||| ||||||||||||||||||||| ||| | ||||||||| ||||||||| |||||
Sbjct 359 GTGAGAAGAACGATATGAAGCTTTCTTGCAGAATTTTCAGAGAGCTCTTGATCTCGCCGG 418
Query 458 GTAAGGAACCATTGAGTTCAGATTGTTATCTCAACCTTGCTAGAGCATTCATTAACACGG 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TTAAGGAACCATTGAGTTCAGATTGTTATCTCAACCTTGCTAGAGCATTCATTAATACCA 478
Query 518 ATGATTGCACGTATTTGACGAGTC-TGCTTAAAGAGATATCAGAGTCTTCACTTCCGTAT 576
||||||||||| |||||||||||| || ||||||| ||||| ||||||||||||||||||
Sbjct 479 ATGATTGCACGCATTTGACGAGTCTTG-TTAAAGAAATATCGGAGTCTTCACTTCCGTAT 537
Query 577 AGGTTAATAGTAATGAACAGAATCATCTTTGCATTTGCTGAAACTAGACAGATCGATAAG 636
||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 538 AGGTTAATAGTAATGAACAGAATCATCCTTGCATTTGCTGAAACGAGACAGATTGATAAG 597
Query 637 GTTCTTATGATACTTAAGGAGATGAAAGAGTGGGAATGTAAACCAGATGTGATCACATAT 696
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTCTTATGATACTTAAGCAGATGAAAGAGTGGGAATGTAAACCAGATGTGATCACATAC 657
Query 697 AACTCGGTTTTGGATATCTTGGGACGAGCTGGCCTTGTGAATGAGAT-TCTGGGGGTTTT 755
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||
Sbjct 658 AACTCGGTTTTGGATATCTTGGGACGAGCTGGCCTCGTGAATGAGATGT-TGGGGGTATT 716
Query 756 GTCAACGATGAAGGAAGATTGTAG-TGTATCTGTAAACATCATTACTTACAACACGGTGT 814
||||||||| ||||||||||| | |||||| |||||||||||||| |||||||||||||
Sbjct 717 GTCAACGATTAAGGAAGATTG-CGATGTATCCGTAAACATCATTACATACAACACGGTGT 775
Query 815 TAAACGGGATGAGGAAAGCTTGTAGATTCGATATGTGTTTGGTGATATACAATGAAATGG 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TAAACGGGATGAGGAAAGCTTGTAGATTCGATATGTGTTTGGTGATATACAATGAAATGG 835
Query 875 TTCAATGTGGAATTGAACCAGATTTGCTAAGTTATACAGCGGTGATAGACAGTTTGGGTC 934
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 836 TTCTGCGTGGAATTGAACCGGATTTGCTAAGTTATACAGCAGTGATAGACAGTTTGGGTC 895
Query 935 GATCTGGGAACGTTAAGGAATCGTTGAGGCTTTTCGATGAGATGAAGCAGAGACAGATTC 994
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 896 GATCTGGGAACACAAAGGAATCGTTGAGGCTTTTCGACGAGATGAAACAGAGACAGATTC 955
Query 995 GACCATCGGTTTATGTCTACCGAGCTTTAATCGATTGTCTGAAGAAGTCAGGAGATTTTC 1054
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 956 GACCATCGGTTTATGTCTACCGTGCTTTAATCGATTGTCTGAAGAAGTCAGGAGATTTTC 1015
Query 1055 AGAGTGCATTGCAGCTTTCAGATGAGTTGAAGAACACTTCCTCATTAGATTTGGCTGGTC 1114
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGGGGGCATTGCAGCTTTCAGATGAGTTGAAGAACACTTCCTCATTAGATTTGGCTGGTC 1075
Query 1115 CACAAGATTTTAAGAGACATTTGAGGTCACATAGACGCTAAAATAGCCTGTGTAAACTCT 1174
|||||||||| |||||||| ||||||||||||||||| || |||||||||| || ||| |
Sbjct 1076 CACAAGATTTCAAGAGACACTTGAGGTCACATAGACGATAGAATAGCCTGTTTAGACTGT 1135
Query 1175 TCAGATTTTGTTAGATATATGTATG 1199
| ||||| ||||||| || ||||||
Sbjct 1136 TTAGATTCTGTTAGAAATGTGTATG 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5