BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11905.1

Length=1095
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334480 jgi|Araly1|334480|fgenesh1_pg.C_scaffold_1001045          1109    0.0  


> Ahg334480 jgi|Araly1|334480|fgenesh1_pg.C_scaffold_1001045
Length=666

 Score = 1109 bits (600),  Expect = 0.0
 Identities = 644/666 (97%), Gaps = 0/666 (0%)
 Strand=Plus/Plus

Query  112  ATGCAGCAATTACTGTTCGCTGTTGTTCTCTTCGAGGTTGTTGTGATAATGGCGCTTTCC  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAGCAATTACTGTTCGCTGTTGTTCTCTTCGAGGTTGTTGTGATAATGGCGCTTTCC  60

Query  172  TTCAAGACGCCGATTAGGAAGCTGTTGATTATGAGCTTGGATCGTTCCAAGCGTGGTCGT  231
            || ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct  61   TTTAAGACGCCGATGAGGAAGCTCTTGATCATGAGCTTGGATCGTTCGAAGCGTGGTCGT  120

Query  232  GGACCGGTGGTGATTCAGACGGTTTCTGCGACGGTTATTGTGCTTCTGGTGACGAGCGTG  291
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GGACCGGTGGTGATTCAGACGGTTTCGGCGACGGTTATTGTGCTTCTGGTGACGAGCGTG  180

Query  292  TACAATATGATGGGGATCCAGAAGCGTTGGATCGAAGATGGTGTAGTGAATCCTACAGAT  351
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  181  TACAATATGATGGGGATCCAGAAGCGTTGGATCGAAGACGGTGTAGTGAACCCTACAGAT  240

Query  352  GAGGTTATCATGGCTAAGCATCTCCTTGAATCGACTCTTATGGGTGGTTTTCTATTCCTT  411
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGGTTATAATGGCTAAGCATCTCCTTGAATCGACTCTTATGGGTGGTTTTCTATTCCTT  300

Query  412  GGGCTAATGATAGACAGGCTGCATCATTACATGAGGGAGCTACGCATAAGAAGGAAGAAC  471
            |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct  301  GGGCTAATGATAGATAGGCTGCATCATTACATGAGAGAACTACGCATAAGAAGGAAGAAC  360

Query  472  ATGGAAGTTATAAAGAAGGAAGGAGCATTATTGGAAGGTGTTAAGGCCAGAGGTTTAGAT  531
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  361  ATGGAAGTTATAAAGAAGGAAGGAGCATTATTGGAAGGTGTAAAGGCCAGAGGTTTAGAT  420

Query  532  GAAGTTAAAAACTTGATGGAAGAAATTACGTCCCTTCGGAAAAGGCAAGAGCAGCTGGAC  591
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  421  GAAGTTAAAAACTTGATGGAAGAAATTACGTCGCTTCGGAAAAGGCAAGAGCAGCTGGAC  480

Query  592  TCTGAGCTTGAGGCAAGGTCTAAAGAAATCCGTACCGAGAAAACTAGTGCGGTTGCTCTA  651
            |||||||||||||||||||||||||| || |||||||||| ||| ||||| |||||||||
Sbjct  481  TCTGAGCTTGAGGCAAGGTCTAAAGAGATTCGTACCGAGAGAACCAGTGCAGTTGCTCTA  540

Query  652  CAGAAGCAATCTGAAGGGTTCCTTATTGAGTTTAACCGGTTGCTTGAGGAAAACCAGGTG  711
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  541  CAAAAGCAATCTGAAGGGTTCCTTATTGAGTTTAACCGGTTGCTTGAGGAAAACCAGGTT  600

Query  712  CTGCGAGACCAATTGCACACTGTGGATTCGAAACTTTCGCGTTCAAGCAGCAAAAAGAAT  771
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  601  CTGCGAGACCAATTGCACGCTGTGGATTCGAAACTTTCGCGTTCAAGCAGCAAAAAGAAT  660

Query  772  ACTTGA  777
            ||||||
Sbjct  661  ACTTGA  666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40791521190


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5