BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11910.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471340 jgi|Araly1|471340|fgenesh2_kg.1__1294__AT1G11910.1 2878 0.0
Ahg475117 jgi|Araly1|475117|fgenesh2_kg.2__247__AT1G62290.2 1339 0.0
Ahg490093 jgi|Araly1|490093|fgenesh2_kg.6__3227__AT4G04460.1 379 4e-104
Ahg920141 jgi|Araly1|920141|scaffold_101422.1 159 5e-38
> Ahg471340 jgi|Araly1|471340|fgenesh2_kg.1__1294__AT1G11910.1
Length=1856
Score = 2878 bits (1558), Expect = 0.0
Identities = 1743/1832 (95%), Gaps = 14/1832 (1%)
Strand=Plus/Plus
Query 1 ATCCCTCCTCACAGTCATCTCTTTCTTCGCAAATAAATGT-AACCATCTCTCTTCTCGTT 59
||| ||||||||||| |||||||||||| ||||||||||| ||| ||||||| |||||||
Sbjct 1 ATCTCTCCTCACAGTGATCTCTTTCTTCCCAAATAAATGTAAACTATCTCTCGTCTCGTT 60
Query 60 TTCTTCAACAAAAATCCTCATTTCTCTGAGAATCTGGTGCTTTAGCTTTGGTAAAATGAA 119
|||||| | | |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 61 TTCTTC--C-ACAATCCTCATTTCTCTGAGAATCTGGTGC-TTAGCTTTTGTAAAATGAA 116
Query 120 GATATACTCTAGAACGGTTGCTGTTTCACTCATTGTGTCATTCCTCCTGTGTTTCTCTGC 179
||| ||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 117 GATTTACTCTACAACGGTTGCTGTTGCACTCATTGTGTCATTCCTACTGTTTTTCTCTGC 176
Query 180 CTTTGCTGAGCGCAATGACGGGACCTTCAGAGTTGGACTGAAAAAACTCAAGTTGGATTC 239
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 177 CTTTTCTGAGCGCAATGACGGGACCTTCAGAGTTGGCCTCAAAAAACTCAAGTTGGATTC 236
Query 240 GAAAAATCGGCTTGCAGCACGCGTCGAATCCAAGCAAGAAAAGCCCCTGAGAGCTTACAG 299
||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 237 CAAAAACCGGCTTGCAGCACGCGTCGAATCCAGGCAAGATAAGCCCCTGAGAGCTTACAG 296
Query 300 ACTTGGAGATTCTGGAGATGCTGATGTTGTTGTGCTTAAGAATTATCTAGATGCTCAGTA 359
|||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 CCTTGGAAATTCTGAAGATGCTGATGTTGTCGTGCTTAAGAATTATCTAGATGCTCAGTA 356
Query 360 CTATGGTGAGATCGCCATTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGG 419
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTACGGTGAGATCGCTATTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGG 416
Query 420 GAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATTTCTCACTTGCATGTCTCTTGCA 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 GAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATTTCTCGCTTGCATGTCTCTTGCA 476
Query 480 TCCCAAATACAAGTCGTCTCGTTCAAGCACATATGAGAAGAATGGAAAAGCTGCCGCAAT 539
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 TCCCAAATACAAGTCTTCGCGTTCAAGCACATATGAGAAGAATGGAAAATCTGCCGCAAT 536
Query 540 TCATTACGGCACTGGAGCAATTGCTGGtttttttAGTAATGATGCTGTCACAGTTGGCGA 599
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 537 TCATTATGGCACTGGTGCAATTGCTGGTTTTTTCAGTAATGATGCCGTCACAGTTGGCGA 596
Query 600 TTTAGTTGTCAAGGATCAGGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGT 659
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 597 TTTAGTTGTCAAGGATCAGGAATTTATTGAGGCAACCAAGGAGCCTGGTATAACATTTGT 656
Query 660 TGTAGCTAAATTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAGC 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TGTAGCTAAGTTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAATGC 716
Query 720 TGCTCCTGTTTGGTACAACATGCTCAAGCAAGGCCTTATCAAGGAGCCGGTTTTTTCATT 779
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 CGCTCCTCTTTGGTACAACATGCTCAAGCAAGGCCTTATCAAGGAGCCAGTTTTTTCATT 776
Query 780 TTGGCTTAACCGTAATGCAGATGAAGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTGGCTTAACCGTAATGCAGATGAAGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGA 836
Query 840 TCCAAATCATTTCAAGGGCAAACATACATATGTTCCTGTGACACAAAAGGGCTACTGGCA 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 837 TCCAAATCATTTCAAGGGCAAACATACATATGTTCCTGTGACACAAAAAGGCTACTGGCA 896
Query 900 GTTTGACATGGGTGATGTTCTTATTGGCGGTGCACCCACTGGGTTCTGTGAAAGTGGCTG 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTTGACATGGGTGATGTCCTTATTGGCGGTGCACCCACTGGGTTCTGTGAAAGTGGCTG 956
Query 960 TTCTGCGATAGCAGATTCTGGTACATCTTTGCTTGCCGGTCCAACGACTATAATCACCAT 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 957 TTCTGCGATAGCAGATTCTGGTACATCTTTGCTTGCAGGTCCAACGACTATTATCACCAT 1016
Query 1020 GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTCGTGGA 1076
Query 1080 TCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGACCCAACCGAAGAAAATCTG 1139
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1077 TCAATACGGGCAGACTATTTTAGATTTACTTTTGTCTGAGACCCAACCAAAGAAAATCTG 1136
Query 1140 CTCGCAGATTGGTCTGTGTACTTTTGATGGTACCCGTGGTGTCAGTATGGGCATTGAGTC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 CTCGCAGATTGGTCTGTGTACTTTTGATGGTACCCGTGGTGTCAGTATGGGCATTCAGTC 1196
Query 1200 GGTGGTGGACAAGGAAAACGCCAAATTGTCTAATGGTGTTGGAGATGCTGCGTGTTCTGC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1197 GGTGGTGGACAAGGAAAACGCCAAATTGTCTAATGGTGTTGGAGATGCTGCGTGCTCTGC 1256
Query 1260 ATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCG 1319
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1257 ATGTGAGATGGCAGTTGTGTGGATCCAGAGCCAGTTGAGGCAGAACATGACTGAAGAACG 1316
Query 1320 CATATTGAACTACGTCAACGAGCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGC 1379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 CATATTGAACTACGTCAACGAGCTATGTGAACGCCTTCCCAGCCCAATGGGAGAGTCTGC 1376
Query 1380 AGTTGACTGTGCACAACTGTCAACAATGCCCACTGTTTCACTT-ACCATTGGAGGCAAAG 1438
|||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 1377 AGTTGACTGTGCTCAACTCTCAACAATGCCCACTGTTTCA-TTCACCATTGGAGGCAAAG 1435
Query 1439 TATTTGATCTTGCTCCAGAAGAGTATGTTCTGAAAGTTGGTGAGGGACCTGTGGCACAGT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TATTTGATCTTGCTCCAGAAGAGTATGTTCTGAAAGTTGGTGAGGGACCTGTGGCACAGT 1495
Query 1499 GCATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGGATCTTGG 1558
|||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1496 GCATCAGTGGCTTTATTGCTCTCGATGTCGCTCCACCTCGTGGACCTCTCTGGATCTTGG 1555
Query 1559 GAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGGTAACGAACAGGTCGGGT 1618
||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
Sbjct 1556 GAGATGTGTTCATGGGCAAATACCACACCGTGTTCGACTTCGGTAACGAACAGGTCGGAT 1615
Query 1619 TTGCAGAGGCAGCCTAAACACGATCGGGTTGGTGTCGCGTATGGTTTTAGTATGAACAAT 1678
||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1616 TTGCAGAGGCAGCGTAAACACGGTCGGGTTGGTTTCGCGTATGGTTTTAGTATGAACAAT 1675
Query 1679 CTGCGTCTCAAGTGTTGTTTGTATGTTTTCTGGAGTTGAGGACTTTGAGTCGTAGTAGAA 1738
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1676 CTGTGTCTCAAGTGTTGTTTGTATGTTTTCTGGAGTTGAAGACTTTGAGTCGTAGTAGAA 1735
Query 1739 ATGGTGGCGCAGTTCCTTTTAAG-TT----G-TTTCCTAACGAAAAAA-GGCCTTTGTAG 1791
|||||||| ||| | |||||| || | |||||||||||||||| |||||||||||
Sbjct 1736 ATGGTGGCACAGCTACTTTTATCCTTTTATGGTTTCCTAACGAAAAAATGGCCTTTGTAG 1795
Query 1792 TTTTGAAGGCATTGGCTTTGTAAATACCTTCT 1823
||||||||||||||||||||||||||||||||
Sbjct 1796 TTTTGAAGGCATTGGCTTTGTAAATACCTTCT 1827
> Ahg475117 jgi|Araly1|475117|fgenesh2_kg.2__247__AT1G62290.2
Length=1726
Score = 1339 bits (725), Expect = 0.0
Identities = 1280/1543 (83%), Gaps = 57/1543 (4%)
Strand=Plus/Plus
Query 122 TATACTCTAGAACGGTTGCTGTTTCACTCATTGTGTCATTCCTCCTGTGTTTCTCTGCCT 181
||||| | ||||| ||||| ||||| ||| |||||| ||||| |||| |||| ||| ||
Sbjct 33 TATACACAAGAACAGTTGCGGTTTCGCTCTTTGTGTGGTTCCTACTGTTTTTCACTGTCT 92
Query 182 -TTGCTGAGCGCAATGACGGGACCTTCAGAGTTGGAC-TGAAAAAACTCAAGTTGGATTC 239
|| || || | ||||| || || ||||||||||| | |||||||||| ||||||||| |
Sbjct 93 CTT-CTCAGAGAAATGATGGAACATTCAGAGTTGG-CTTGAAAAAACTAAAGTTGGATCC 150
Query 240 GAAAAATCGGCTTGCAGCACGCGTCGAATCCAAGCAAGAAAAGCCCCTGA-G-------- 290
|| || || |||||| ||||| | | |||||||||||| || || ||| |
Sbjct 151 CAACAACCGACTTGCAACACGCTTTGGTTCCAAGCAAGAAGAGGCCTTGAGGTCCTCTTT 210
Query 291 AGC-T--T---AC-A-GA-CTTGG-A--GATTCTGGAGATGCTGATGTTGTTGTGCTTAA 338
| | | | || | | ||||| | ||||||||||||||||| |||| ||| ||
Sbjct 211 ACCTTCGTACAACAACAATCTTGGTAGTGATTCTGGAGATGCTGACATTGTCCCGCTCAA 270
Query 339 GAATTATC-TAGATGCTCAGTACTATGGTGAGATCGCCATTGGTACTCCACCTCAGAAGT 397
|||||| | | ||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct 271 GAATTA-CTTGGATGCTCAGTATTATGGTGAGATTGCTATCGGTACTCCACCGCAGAAGT 329
Query 398 TCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATT 457
||||||| ||||||| || || ||||||||||| |||||||||||| |||||| | ||
Sbjct 330 TCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAGGAAAATGTTTTT 389
Query 458 TCTCACTTG-CATGTCTCTTGCATCCCAAATACAAGTCGTCTCGTTCAAGCACATATGAG 516
|||| | || | ||| |||| ||| |||| | |||||| || || |||||||||||| ||
Sbjct 390 TCTCGC-TGTCTTGTTTCTTTCATGCCAAGTTCAAGTCCTCACGCTCAAGCACATATAAG 448
Query 517 AAGAATGGAAAAGC-TGCCGCAATTCATTACGGCACTGGAGCAAT-TGCTGGtttttttA 574
|||| ||||||| | ||||||||| ||||||||| | ||| | || | ||||||| ||||
Sbjct 449 AAGAGTGGAAAA-CGTGCCGCAATCCATTACGGCTCAGGATCGATCT-CTGGTTTCTTTA 506
Query 575 GTAATGATGCTGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGGAGTTTATCGAGGCAA 634
|| |||||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct 507 GTTATGATGCTGTTACGGTTGGTGATTTGGTTGTCAAAGATCAGGAGTTTATTGAGGCAA 566
Query 635 CCAAG-GAGCCTGGTATAACATTTGTTGTAGCTAAATTTGATGGTATCCTTGGTCTTGGA 693
|| || ||||||||| ||||||| | || ||||| ||||||||| | ||||||||||||
Sbjct 567 CC-AGTGAGCCTGGTTTAACATTCCTGGTGGCTAAGTTTGATGGTCTTCTTGGTCTTGGA 625
Query 694 TTCCAAGAGATCTCTGTTGGAAAAGCTGCTCCTGTTTGGTACAACATGCTCAAGCAAGGC 753
|||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 626 TTCCAAGAGATCGCTGTTGGAAACGCTACTCCTGTTTGGTACAATATGCTCAAGCAAGGC 685
Query 754 CTTATCAAGGAG-CCGGTTTTTTCATTTTGGCTTAACCGTAATGCAGATGA-AGAAGAAG 811
|||||| | ||| ||||| ||||||||||||||||||||| | || | || |||||||
Sbjct 686 CTTATCGA-GAGACCGGTGTTTTCATTTTGGCTTAACCGTGACCCA-AAGAGTGAAGAAG 743
Query 812 GTGGTGAACTTGTATTTGGAGGTGTTGATCCAAATCATTTCAAGGGCA-AACATACATAT 870
| |||||| | |||||||||||||||||||| || |||||||| || | ||||||||| |
Sbjct 744 GCGGTGAAATCGTATTTGGAGGTGTTGATCCTAAGCATTTCAAAGG-AGAACATACATTT 802
Query 871 GTTCCTGTGACACAAAAGGGCTACTGGCAGTTTGACATGGGTGATGTTCTTATTGGCGGT 930
|||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||| ||||
Sbjct 803 GTTCCTGTGACACAAAGGGGTTACTGGCAGTTCGACATGGGTGAGGTTCTCATTGCCGGT 862
Query 931 GCA-CCCACTGGGT-TCTGTGAAAGTGGCTGTTCTGCGATAGCAGATTCTGGTACATCTT 988
| | | ||||| | | |||| |||||| ||||| ||||||||||||||||| || ||||
Sbjct 863 G-ATTCTACTGGATAT-TGTGGAAGTGGTTGTTCGGCGATAGCAGATTCTGGAACGTCTT 920
Query 989 TGCTTGCCGGTCCAACGACTATAATCACCATGATAAACCATGCTATTGGAGCAGCTGGAG 1048
| ||||| || || ||| || | || ||||||||||| | ||||||||||| ||||||
Sbjct 921 TACTTGCAGGGCCGACGGCTGTGATTGCCATGATAAACAAAGCTATTGGAGCCTCTGGAG 980
Query 1049 TTGTTAGCCAGCAGTGCAAGACTGTTGTGGATCAATACGGGCAGACCATTTTGGATTTAC 1108
|||||||||||||||||||||||||||| ||||| || || || ||||||||||||||||
Sbjct 981 TTGTTAGCCAGCAGTGCAAGACTGTTGTTGATCAGTATGGACAAACCATTTTGGATTTAC 1040
Query 1109 TTTTGTCTGAGACCCAACCGAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTGATG 1168
||||| ||||||| ||||| ||||| |||||||| || |||||||| || |||| ||||
Sbjct 1041 TTTTGGCTGAGACTCAACCAAAGAAGATCTGCTCACAAATTGGTCTTTGCGCTTTCGATG 1100
Query 1169 GTACCCGTGGTGTCAGTATGGGCATTGAGTCGGTGGTGGACAAGGAAAACGCCAAATTGT 1228
| |||| || ||||||||||| ||||||||||||||||||||||||||| | | || |
Sbjct 1101 GCACCCACGGGGTCAGTATGGGGATTGAGTCGGTGGTGGACAAGGAAAACACGAGATCAT 1160
Query 1229 CTAATGGTGTTGGAGATGCTGCG-TGTTCTGCATGTGAGATGGCTGTTGTGTGGATCCAG 1287
||| |||| || ||||||| | | ||| |||||||||| ||||| ||||||||||| |||
Sbjct 1161 CTAGTGGTCTTCGAGATGCCG-GTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATACAG 1219
Query 1288 AGCCAGTTGAGGCAAAACATGACTCAAGAGCGCATATTGAACTACGTCAACGAGCTATGT 1347
||||| |||||||| ||||||||||||||||| ||| |||||||| | || ||| ||||
Sbjct 1220 AGCCAATTGAGGCAGAACATGACTCAAGAGCGGATAGTGAACTACATTAATGAGATATGC 1279
Query 1348 GAACGCCTCCCCAG-CCCAATGGGAGAGTCTGCAGTTGACTG-TGCACAACTGTCAACAA 1405
|| ||| | || || || ||| ||||||||||||||||| || | ||||||| |||||||
Sbjct 1280 GAGCGCATGCCTAGTCCAAAT-GGAGAGTCTGCAGTTGATTGCT-CACAACTCTCAACAA 1337
Query 1406 TGCCCACTGTTTCACTT-ACCATTGGAGGCAAAGTATTTGATCTTGCTCCAGAAGAGTAT 1464
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TGCCCACTGTTTCA-TTCACCATTGGAGGCAAAGTATTTGATCTTGCTCCAGAAGAGTAC 1396
Query 1465 GTTCTGAA-AGTTGGTGAGGGACCTGTGGCACAGTGCATCAGTGGTTTTATTGCTCTTGA 1523
|| ||||| | |||| || ||||| |||||||| ||||| || || |||| || |||||
Sbjct 1397 GTACTGAAGA-TTGGGGAAGGACCAGTGGCACAATGCATTAGCGGCTTTACCGCACTTGA 1455
Query 1524 CGTTGCTCCACCTCGTGGACCTCTCTGGAT-CTTGGGAGATGTGTTCATGGGCAAATACC 1582
| | ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 1456 CATCCCTCCACCTCGTGGACCTCTCTGGATACTTGG-AGATGTGTTTATGGGCAAATACC 1514
Query 1583 ACACCGTATTTGACTTTGGTAACGAACAGGTCGGGTTTGCAGA 1625
|||| || |||||||| || ||||| ||||| ||||| |||||
Sbjct 1515 ACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGGTTCGCAGA 1557
> Ahg490093 jgi|Araly1|490093|fgenesh2_kg.6__3227__AT4G04460.1
Length=1705
Score = 379 bits (205), Expect = 4e-104
Identities = 683/907 (75%), Gaps = 60/907 (7%)
Strand=Plus/Plus
Query 317 ATGCTGATGTTGTTGTGCTTAAGAATTATCTAGATGCTCAGTACTATGGTGAGATCGCCA 376
|||| ||| | ||| ||| || |||||| | |||||||| ||||||||||| || |||
Sbjct 272 ATGCGGATATGGTTCCGCTGAAAAATTATTTGGATGCTCAATACTATGGTGACATTACCA 331
Query 377 TTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGG 436
||||||||||||||||||||||||||||| | ||||| ||||| ||||| || ||||||
Sbjct 332 TTGGTACTCCACCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGA 391
Query 437 TGCCATC-ATCAAAATGCTATTTCTCACTTGCATGTCTCTTGC-A-TCCCAAATACAAGT 493
| ||||| | | ||||| || || || |||| ||| | || | | ||| || ||||||
Sbjct 392 TACCATCTA-CTAAATGTTACTTATCGGTTGCTTGT-TATTTCCACTCC-AAGTACAAGG 448
Query 494 C--GTCTCGTTCAA-GCACATATGAGAA-GAATGGAAAAGCTGCCG-CAATTCATTACGG 548
| | | || || | |||| |||| ||| || ||| | || | |||| | || ||
Sbjct 449 CTAGCCA-GT-CATCGT-CATAC-AGAAAGAACGGGAAACCCGC-GTCAATCCGCTATGG 503
Query 549 CACTGGAGCAATTGCTGGtttttttAGTAATGATGCTGTCACAGTTGGCGATTTAGTTGT 608
|| || || ||| |||||| ||||| ||||||| ||| | |||||| ||| | |||||
Sbjct 504 GACAGGTGCTATTTCTGGTTACTTTAGCAATGATGATGTTAAAGTTGGTGATATCGTTGT 563
Query 609 CAAGGATCAGGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTG-TAGCTA 667
|||||| ||||| || || ||||| || | |||||||||||||| || ||| | || |
Sbjct 564 CAAGGAGCAGGAATTCATAGAGGCTACTACTGAGCCTGGTATAACCTTC-TTGCTGGC-A 621
Query 668 AA-TTTGATGGTATCCTTGGTCTTGGATTCCAA-GAGATCTCTGTTGGAAAAGCTGCTCC 725
|| |||||||||||||| ||| |||| || ||| ||||| ||||| ||||| | ||||
Sbjct 622 AAGTTTGATGGTATCCTCGGT-TTGGGTTTCAAAGAGATTTCTGTCGGAAATTCAACTCC 680
Query 726 TGTTTGGTACAACATGCTC-AAGCAAGGCCTTA-TCAAGGAGCCGGTTTTTTCATTTTGG 783
|||||||| |||||| | || |||| || | ||||| || || ||||| || |||
Sbjct 681 GGTTTGGTATAACATGGTAGAAA-AAGGT-TTGGTTAAGGACCCAGTCTTTTCGTTCTGG 738
Query 784 CTTAACCGTAAT--GCAGATGAAGAAGAAGGTGGTGA-ACTTGTATTTGGAGGTGTTGAT 840
||||||||||| ||| | || ||||||||||||| | |||| ||||| || || ||
Sbjct 739 CTTAACCGTAACCCGCA-A-GATCAAGAAGGTGGTGAGA-TTGTTTTTGGCGGAGTCGAC 795
Query 841 CCAAATCATTTCAAGGGCAAA-CATACATATGTTCCTGTGACACA-AAAGGGCTACTGGC 898
||||| || ||||| || | | ||||| ||||||||||||||||| ||||| |||||||
Sbjct 796 CCAAAACACTTCAAAGG-AGAGCATACTTATGTTCCTGTGACACATAAAGGT-TACTGGC 853
Query 899 AGTTTGACATGGGTGATGTTCTTATTGGCGGTGCAC-CC-ACTGGGT-TCTGTG--AAAG 953
||||||||||||||||||| | |||| | | ||| || || || | | |||| ||||
Sbjct 854 AGTTTGACATGGGTGATGTCCAAATTG-CTG-GCAAACCTACAGGATAT-TGTGCTAAAG 910
Query 954 TGGCTGTTCTGCGATAGCAGATTCTGGTACATCTTTGCTTGCCGGTCCAACGACTATAAT 1013
| |||||||| || || ||||| || || ||| |||| |||||||| ||||| | ||
Sbjct 911 -GT-TGTTCTGCTATTGCTGATTCCGGAACTTCTCTGCTCACCGGTCCATCGACTGTCAT 968
Query 1014 CACCATGATAAACCATGCTATTGGAGCAGCT-GGAGTTGTTAGCCA-GCAGTGCAAGACT 1071
||| ||||| || ||||| || |||||| | ||| | || |||| | | |||||| ||
Sbjct 969 CACGATGATCAATCATGCGATAGGAGCA-CAAGGAATCGTAAGCCGTGAA-TGCAAGGCT 1026
Query 1072 GTTGTGGATCAATACGGGCAGACCATTTTGGATT-TACTTTT-GTCTGAG-ACCCAACCG 1128
|| |||||||| ||||| | || || ||| ||| | ||| | | || || | | |||
Sbjct 1027 GTGGTGGATCAGTACGGAAAAACAATGTTGAATTCT-CTTCTAG-CTCAGGAGG-ATCCG 1083
Query 1129 AAGAAAATCTGCTCGCAGATTGG--TCTGTGTACTTTTGATGGTACCCGTGGTGTCAGTA 1186
||||| | ||||| || ||||| |||| | ||| ||||||||| | |||| ||||
Sbjct 1084 AAGAAGGTATGCTCACAAATTGGAGTCTGCG--CTTATGATGGTACACACAGTGTGAGTA 1141
Query 1187 TGGGCAT 1193
||| |||
Sbjct 1142 TGGACAT 1148
> Ahg920141 jgi|Araly1|920141|scaffold_101422.1
Length=1012
Score = 159 bits (86), Expect = 5e-38
Identities = 105/114 (92%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 618 GGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGTTGTAGCTAAATTTGATGG 677
||| ||||||||||||||||||||| |||||||||| ||| |||||||||| |||||| |
Sbjct 579 GGA-TTTATCGAGGCAACCAAGGAGTCTGGTATAACTTTTTTTGTAGCTAACTTTGAT-G 636
Query 678 TATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAGCTGCTCCTGTTTG 731
|||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 637 TATCTTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAGGCCGCTCCTGTTTG 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5