BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11915.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471341 jgi|Araly1|471341|fgenesh2_kg.1__1295__AT1G11915.1 1679 0.0
> Ahg471341 jgi|Araly1|471341|fgenesh2_kg.1__1295__AT1G11915.1
Length=1173
Score = 1679 bits (909), Expect = 0.0
Identities = 1089/1174 (93%), Gaps = 20/1174 (2%)
Strand=Plus/Plus
Query 1 GAACAATGTCTCCACTTCACTCTTACATTATCTTCTTCTCCCTTCTCATGACCATCCTTC 60
|||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||
Sbjct 1 GAACAATGTCTCCACTTCACTCTTACTTTATCTTCTTCTTCCTTCTTATGGCCATCCTTC 60
Query 61 TTCAATCATCAACAACATCATCCCAATCAAATCTCTGCAGATCTTCTTGCGGCAACATTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAATCATCAACAACATCATCCCAATCAAATCTCTGCAGATCTTCTTGCGGCAACATTC 120
Query 121 CGATAAATTACCCTTTTTCCATCGACGACGGTTGTGGTAGCCCTTATTACAGACACATGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGATAAATTACCCTTTTTCCATCGACGACGGTTGTGGTAGCCCTTATTACAGACACATGC 180
Query 181 TCATTTGCTCCGACAACGATACCAAGCTCGAACTTAGAACACCATCTGGTAAATACCCTG 240
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTTGCTCCGACAACAACACCAAGCTCGAACTTAGAACACCATCTGGTAAATACCCTG 240
Query 241 TTAAATCTATAAGCTACTCTGATCCTCACCTTCTTGTCTCCGATCCATTCATGTGGAACT 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TTAAATCCATAAGCTACTCTGATCCTCACCTTCTTGTCTCCGATCCATTCATGTGGAATT 300
Query 301 GTCAAGATCGAGACAATTTTCGACCCACTAGATCTTTTAGCATCGATTCAAGTACACACT 360
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 301 GTCAAGATCGAGACAATTTTCGACCGACTAGATCATTTAGCATCGATTCAAGCACACACT 360
Query 361 TCACTGTCTCTCCTCAAAACGACTACTTGTTCTTCAACTGCAACACCGATAAAGTTATCG 420
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 361 TCACTGTCTCCCCTCAAAACGACTACTTGTTCTTCAACTGCAACACCGAGAAAGTAATAG 420
Query 421 TCGAACCAAAACCGCTCTTCTGCGAAAGGTTTCCAGATAGATGTGACTCGTCCTGCGATA 480
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TCGAGCCAAAACCGCTCTTCTGCGAGAGGTTTCCAGATAGATGTGACTCGTCCTGCGATA 480
Query 481 GTTCTAGCTATCTATGCAGACATTTGCCTGAATGTGGCTCTGCTTTGGGATCTAGGGTTT 540
|||| |||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 481 GTTCAAGCTATTTATGCAGGCATTTGCCCGAATGCGGCTCTGCTTTGGGATCTAGGGTTT 540
Query 541 CTTGTTGTTCGTATTACCCTAAAGCGACTCAATCTCTTAGGCTCATGCTGCAGGACTGTG 600
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||| |
Sbjct 541 CTTGTTGTTCGTATTACCCGAAAGCCACTCAGTCTCTTAGGCTCATGCTGCAGAACTGCG 600
Query 601 CGACGTATACAAGTGTGTATTGGAGGAGTACAGGTGTGGAGAATGCACCGTATGATCAGT 660
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGACATATACAAGCGTGTATTGGAGGAGTACAGGTGTGGAGAATGCACCGTATGATCAGT 660
Query 661 TTCCAGAGTACGGGATAAGGGTTGATTACGAATTTCCAGTGACAATGAAGTGCCTTCTTT 720
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 661 TTCCAGAGTACGGGATTAGGGTTGATTTCGAATTTCCAGTGACTATGAAGTGCCTTCTTT 720
Query 721 GCCAAGAAACGACTAAAGGTGGTGGAGTTTGTGGGTTTAATACGAGGACACGAGATTTTT 780
||||||||||||| |||||| |||||||||||||||||||||| ||||| || ||||| |
Sbjct 721 GCCAAGAAACGACGAAAGGTAGTGGAGTTTGTGGGTTTAATACAAGGACTCGGGATTTCT 780
Query 781 TGTGCCTTTGTAAACAAGGCAATGTCACTACTTATTGCAAAGATCCAAGCCTCGTAAACC 840
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 781 TGTGCCTTTGCAAACAAGGCAACGTCACTACTTATTGCAAAGATCCAAGCCTCGTAAAGC 840
Query 841 ATAAACGCGTAGGAGCTATCGCAGGAACAGTGACGGCAGTTTCAGCGGCAGGAGCGATTG 900
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 ATAAACGCGTTGGAGCTATGGCAGGAACAGTGACGGCAGTTTCAGCGGCCGGAGCGATTG 900
Query 901 GCGTTGCCGGTGGAGTATATTGGTACTTGAGGAAAGTGAGAGCCAATGCTCCGGTCACTT 960
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 GCGTTGCGGGTGGAGTGTATTGGTACTTGAGGAAAGTGAGAGCCAAAGCTCCGGTCACTT 960
Query 961 GTGGAGTTCAAAGCAATGAGAACAGAATTTTCTAAAAGCTCCAATGAAATCATAATTTTA 1020
||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 GTGGAGTGCAAAGCAACGAAAACAGAATTTTCTAAAAGCTCCAATGAAATCATAACTTTA 1020
Query 1021 AAAAGATTAAAAGCATGGTC------ACACTCACACt-c-ttcttttcttcttttttcgc 1072
| |||| |||||||||||| ||||||||| | | || |||| || |||||| |
Sbjct 1021 AGAAGAC-AAAAGCATGGTCGGTCCCACACTCACAATTCCTTTTTTTTTTTTTTTTT-G- 1077
Query 1073 tctcttttgccttttttgttctttaccttttatctttgattttgTGTATACTACAA-GTT 1131
||| |||| |||||| | ||| ||||||||||||||| ||||||| ||||||| |||
Sbjct 1078 TCT-TTTT---TTTTTTAAT-TTT-CCTTTTATCTTTGATCTTGTGTAGACTACAAAGTT 1131
Query 1132 CTAGATAAAGATTTTCGTATAATTTTTTGTGTTT 1165
|||||||||||| ||||||||||| || |||
Sbjct 1132 GG-GATAAAGATTTTTGTATAATTTTTCGT-TTT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5