BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11920.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312221 jgi|Araly1|312221|fgenesh1_pm.C_scaffold_1001001 1814 0.0
Ahg912851 jgi|Araly1|912851|Al_scaffold_0001_3105 623 9e-178
> Ahg312221 jgi|Araly1|312221|fgenesh1_pm.C_scaffold_1001001
Length=1152
Score = 1814 bits (982), Expect = 0.0
Identities = 1100/1157 (95%), Gaps = 7/1157 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCTTTTCTTAACAATTATTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTT 60
|||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGCTTCTCTTTTCTTAAC-A--CTTTCACTTCTCTTTGCAGCTTTCTCTTCTTTTATT 57
Query 61 GTAGAGGCTGCTTACAGTAATGGTTATACCATTCCCAAACTATTACCAAACCCTATCGAT 120
|||||||| |||||| ||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 58 GTAGAGGCGGCTTACGGTAATGGTTATACAATTCCCAAACTATTACTAAATCCTATCGAT 117
Query 121 TCTTGCTGGCGAAGAAACCCTTA-TTGGGCGTCTAACCGTCGTGCACTAGCCGATTGCGC 179
|||||||||||||||||||| || |||||||| |||||||||| | ||||||||||||||
Sbjct 118 TCTTGCTGGCGAAGAAACCC-TAGTTGGGCGTTTAACCGTCGTTCTCTAGCCGATTGCGC 176
Query 180 GGTAGGGTTTGGAAAATCTGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 239
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGTAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 236
Query 240 CCCATCAGACGACCCTGAAAACCCTAGACCCGGAACACTGAGATACGCAGTGATCCAATC 299
|||||||||||||||||||||||||||||| ||||| || ||| |||| |||||||||||
Sbjct 237 CCCATCAGACGACCCTGAAAACCCTAGACCAGGAACTCTTAGACACGCCGTGATCCAATC 296
Query 300 TAAACCATTATGGATCACATTTGCACGTGACATGGTCATAGTGTTGCGTAACGAGCTCAT 359
||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 297 TAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAACGAACTCAT 356
Query 360 CATGAACAGCTACAAGACGATTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACC 419
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 357 CATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGACC 416
Query 420 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 476
Query 480 TAAACCGGGTAAGTCGGGGCGGGTACGGAGCAGCCCGACCCATGTTGGTAGCCGGAAAGG 539
|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 477 TAAACCGGGTAAGTCGGGTCGGGTTCGGAGCAGCCCGACTCATGTTGGCAGCCGGAAAGG 536
Query 540 ATCGGACGGTGATGCAATAGCCATTTTTGATTCGTCACATATTTGGATTGATCATTGTTT 599
|||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 537 ATCGGATGGTGACGCAATAGCCATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTA 596
Query 600 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCTACGGCTGTCACTAT 659
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 597 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCGACGGCCGTCACTAT 656
Query 660 TTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAATGACAATAA 719
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 657 TTCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAA 716
Query 720 TGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAACCATTTCGGACCGGGTCTTAT 779
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 717 TGTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAACCATTTTGGACCGGGTCTTAT 776
Query 780 TGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAATAGGTACGAGAA 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836
Query 840 ATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGTGAAGGCAACTA 899
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896
Query 900 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 956
Query 960 TGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAACGGAGCTTACTT 1019
|||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 957 TGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACTT 1016
Query 1020 CGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAGAGCAGAGCGGTTTCCGGT 1079
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1017 CGTGCCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAGAGCAGAGTGGTTTCCGGT 1076
Query 1080 GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCCTCTCCATTGCTATT 1138
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1077 GTCTCACGGCTCTCTCGTCCCTTCT-CTTACTTCGTCCGCCGGTCCTCTCCATTGCTATT 1135
Query 1139 CCGGCAGAATTTGCTAA 1155
|||||||||||||||||
Sbjct 1136 CCGGCAGAATTTGCTAA 1152
> Ahg912851 jgi|Araly1|912851|Al_scaffold_0001_3105
Length=1107
Score = 623 bits (337), Expect = 9e-178
Identities = 537/631 (85%), Gaps = 23/631 (4%)
Strand=Plus/Plus
Query 535 AAAGGATCGGACGGTGATGCAATAGCCA-TTTTTGATTCGT-CACATATTTGGATTGATC 592
||||||| ||| ||||| | |||| | | ||||| | || | ||||| ||||||| ||||
Sbjct 490 AAAGGATGGGATGGTGACGGAATA-CGAGTTTTTCAATC-TACACATGTTTGGATCGATC 547
Query 593 ATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGT-ACTTCATGCTTCTACGGCT 651
|||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 548 ATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGTGA-TTCTTTCTTCTACGGCT 606
Query 652 GTCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAAT 711
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 607 ATCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATATTACTCGGACATGAT 666
Query 712 GACAA-TA-ATGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAACCA-TTTCGGA 768
||||| || ||| || |||||| |||||||||||||| ||||| ||||| | ||| |||
Sbjct 667 GACAATTACATG-GG-AGATAAAATCATGAGAGTTACCATTGCATTCAA-TACTTTTGGA 723
Query 769 CCGGGTCTTATTGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAAT 828
|||||||| ||||||||||||||||| ||| | ||||| |||||||||||||||||||||
Sbjct 724 CCGGGTCTGATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCGCATGTAGCAAACAAT 783
Query 829 AGGTACGAGAAATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGT 888
||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct 784 AGGTACGAGAAATGGCAAATGTATGCGATTGGAGGAAGTGCTAATCCAATTATCTTTAGT 843
Query 889 GAAGGCAACTACTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATA 948
||||||||||||||||||||| | || | ||||||| ||||||||||| || |||||
Sbjct 844 GAAGGCAACTACTTCGTTGCTCCCGACAAAGCTAGCAACAAACAGGTGACGAAGAGAATG 903
Query 949 GATAGTGG-ATATGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAA 1007
| | | || | ||||| || |||||||||||| | ||| | ||||||||||| | |||
Sbjct 904 GGT-GCGGGACCTGATTCTAAAAGATGGAAATGGGGTACGGCTAAAGACGTTTTCATGAA 962
Query 1008 CGGAGCTTACTTCGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAG-AGCAG 1066
|||||||| ||||||||| |||||| |||| |||| ||| |||||| ||| || ||
Sbjct 963 CGGAGCTTTCTTCGTGCCGTCTGGC---GGAATAGTCAGGCCATTGTACA-AAGCAGGAG 1018
Query 1067 AGCGGTTTCCGGT-GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCC 1124
|| |||||| ||| | | || |||||||||||||||| | |||||||| || ||||||||
Sbjct 1019 AGGGGTTTCAGGTCGCC-CATGGCTCTCTCGTCCCTTCT-CTTACTTCCTCTGCCGGTCC 1076
Query 1125 TCTCCATTGCTATTCCGGCAGAATTTGCTAA 1155
||||| |||||| | ||||| |||||||||
Sbjct 1077 TCTCCGTTGCTACGCAGGCAGGATTTGCTAA 1107
Score = 425 bits (230), Expect = 3e-118
Identities = 392/470 (83%), Gaps = 12/470 (3%)
Strand=Plus/Plus
Query 26 TTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTTGTAGAGGCTGCTTACAGTAATGGT- 84
||||||||||||| ||| ||||| |||||||| |||||||| ||||| | |||||| |
Sbjct 23 TTTCACTTCTCTTGGCAACTTTCGCTTCTTCTCTTGTAGAGACTGCTCATAGTAATAATG 82
Query 85 TATACCATTCCCAAACTATTACCAAACCCT-ATCGATTCTTGCTGGCGAAGAAACCCTTA 143
|| ||||| |||| ||| || ||| | || ||| |||||||||||||||||||| |
Sbjct 83 TA-ACCATCCCCAGGGTATCACTAAA-TGTAATTGATGCTTGCTGGCGAAGAAACCCTAA 140
Query 144 TTGGGCGTCTAACCGTCGTGCACTAGC-CGATTGCGCGGTAGGGTTTGGAAAATCTGCGG 202
|||||| ||||||||| || ||||| | ||||||||||||||| || ||| | || |
Sbjct 141 TTGGGCCACTAACCGTCAAGCCCTAGCAC-ATTGCGCGGTAGGGTACGGGAAAGCCGCAG 199
Query 203 TTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAACCCATCAGACGACCCTGAAAA-C 261
| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| | || |
Sbjct 200 TAGGGGGGAAACACGGGCCGATCTACGTGGTTACAAACCCATCAGACAACCCT-ACAAGC 258
Query 262 CCTAGACCCGGAACACTGA-GATACGCAGTGATCCAATCTAAACCATTATGGATCACATT 320
||||| |||||||| || | ||| || |||| |||| | |||||| |||||||||||||
Sbjct 259 CCTAGCCCCGGAAC-CTTAAGATTTGCGGTGACCCAACCAAAACCACTATGGATCACATT 317
Query 321 TGCACGTGACATGGTCATAGTGTTGCGTAA-CGAGCTCATCATGAACAGCTACAAGACGA 379
|||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||
Sbjct 318 CGCACGTGACATGGTGATAGTGTTGAA-AAGCGAGCTCATGGTGAACAGCTACAAGACGA 376
Query 380 TTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACCATGCATAACGATCCAACATG 439
| ||||| |||||||| ||||| ||||| ||| | || |||||| ||| |||| |||| |
Sbjct 377 TCGATGGGAGAGGGGCAAAAGTTGAAATAGCCAACGGGCCATGCTTAAGGATCAAACAAG 436
Query 440 TGAGCCATGTCATTATACATGGGATAAGTATCCATGATTGTAAACCGGGT 489
|||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 437 TGAGCCATGTCATTATACATGGTATTAGTATCCATGATTGTAAACCAGGT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5