BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11920.1 Length=1155 Score E Sequences producing significant alignments: (Bits) Value Ahg312221 jgi|Araly1|312221|fgenesh1_pm.C_scaffold_1001001 1814 0.0 Ahg912851 jgi|Araly1|912851|Al_scaffold_0001_3105 623 9e-178 > Ahg312221 jgi|Araly1|312221|fgenesh1_pm.C_scaffold_1001001 Length=1152 Score = 1814 bits (982), Expect = 0.0 Identities = 1100/1157 (95%), Gaps = 7/1157 (1%) Strand=Plus/Plus Query 1 ATGGCTTCTCTTTTCTTAACAATTATTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTT 60 |||||||||||||||||||| | |||||||||||||||||||||||||||||| | || Sbjct 1 ATGGCTTCTCTTTTCTTAAC-A--CTTTCACTTCTCTTTGCAGCTTTCTCTTCTTTTATT 57 Query 61 GTAGAGGCTGCTTACAGTAATGGTTATACCATTCCCAAACTATTACCAAACCCTATCGAT 120 |||||||| |||||| ||||||||||||| |||||||||||||||| ||| ||||||||| Sbjct 58 GTAGAGGCGGCTTACGGTAATGGTTATACAATTCCCAAACTATTACTAAATCCTATCGAT 117 Query 121 TCTTGCTGGCGAAGAAACCCTTA-TTGGGCGTCTAACCGTCGTGCACTAGCCGATTGCGC 179 |||||||||||||||||||| || |||||||| |||||||||| | |||||||||||||| Sbjct 118 TCTTGCTGGCGAAGAAACCC-TAGTTGGGCGTTTAACCGTCGTTCTCTAGCCGATTGCGC 176 Query 180 GGTAGGGTTTGGAAAATCTGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 239 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 177 GGTAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 236 Query 240 CCCATCAGACGACCCTGAAAACCCTAGACCCGGAACACTGAGATACGCAGTGATCCAATC 299 |||||||||||||||||||||||||||||| ||||| || ||| |||| ||||||||||| Sbjct 237 CCCATCAGACGACCCTGAAAACCCTAGACCAGGAACTCTTAGACACGCCGTGATCCAATC 296 Query 300 TAAACCATTATGGATCACATTTGCACGTGACATGGTCATAGTGTTGCGTAACGAGCTCAT 359 ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 297 TAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAACGAACTCAT 356 Query 360 CATGAACAGCTACAAGACGATTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACC 419 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 357 CATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGACC 416 Query 420 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 476 Query 480 TAAACCGGGTAAGTCGGGGCGGGTACGGAGCAGCCCGACCCATGTTGGTAGCCGGAAAGG 539 |||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| Sbjct 477 TAAACCGGGTAAGTCGGGTCGGGTTCGGAGCAGCCCGACTCATGTTGGCAGCCGGAAAGG 536 Query 540 ATCGGACGGTGATGCAATAGCCATTTTTGATTCGTCACATATTTGGATTGATCATTGTTT 599 |||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 537 ATCGGATGGTGACGCAATAGCCATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTA 596 Query 600 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCTACGGCTGTCACTAT 659 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 597 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCGACGGCCGTCACTAT 656 Query 660 TTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAATGACAATAA 719 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 657 TTCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAA 716 Query 720 TGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAACCATTTCGGACCGGGTCTTAT 779 |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 717 TGTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAACCATTTTGGACCGGGTCTTAT 776 Query 780 TGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAATAGGTACGAGAA 839 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836 Query 840 ATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGTGAAGGCAACTA 899 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896 Query 900 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 956 Query 960 TGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAACGGAGCTTACTT 1019 |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 957 TGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACTT 1016 Query 1020 CGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAGAGCAGAGCGGTTTCCGGT 1079 |||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1017 CGTGCCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAGAGCAGAGTGGTTTCCGGT 1076 Query 1080 GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCCTCTCCATTGCTATT 1138 ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct 1077 GTCTCACGGCTCTCTCGTCCCTTCT-CTTACTTCGTCCGCCGGTCCTCTCCATTGCTATT 1135 Query 1139 CCGGCAGAATTTGCTAA 1155 ||||||||||||||||| Sbjct 1136 CCGGCAGAATTTGCTAA 1152 > Ahg912851 jgi|Araly1|912851|Al_scaffold_0001_3105 Length=1107 Score = 623 bits (337), Expect = 9e-178 Identities = 537/631 (85%), Gaps = 23/631 (4%) Strand=Plus/Plus Query 535 AAAGGATCGGACGGTGATGCAATAGCCA-TTTTTGATTCGT-CACATATTTGGATTGATC 592 ||||||| ||| ||||| | |||| | | ||||| | || | ||||| ||||||| |||| Sbjct 490 AAAGGATGGGATGGTGACGGAATA-CGAGTTTTTCAATC-TACACATGTTTGGATCGATC 547 Query 593 ATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGT-ACTTCATGCTTCTACGGCT 651 |||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||| Sbjct 548 ATTGTTTCTTTTCTCGGTGTCAAGATGGTTTGATCGATGTGA-TTCTTTCTTCTACGGCT 606 Query 652 GTCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAAT 711 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 607 ATCACTATTTCTAATAACTACTTCACGCAGCATGATAAAGTGATATTACTCGGACATGAT 666 Query 712 GACAA-TA-ATGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAACCA-TTTCGGA 768 ||||| || ||| || |||||| |||||||||||||| ||||| ||||| | ||| ||| Sbjct 667 GACAATTACATG-GG-AGATAAAATCATGAGAGTTACCATTGCATTCAA-TACTTTTGGA 723 Query 769 CCGGGTCTTATTGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAAT 828 |||||||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||||| Sbjct 724 CCGGGTCTGATTGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCGCATGTAGCAAACAAT 783 Query 829 AGGTACGAGAAATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGT 888 ||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||| Sbjct 784 AGGTACGAGAAATGGCAAATGTATGCGATTGGAGGAAGTGCTAATCCAATTATCTTTAGT 843 Query 889 GAAGGCAACTACTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATA 948 ||||||||||||||||||||| | || | ||||||| ||||||||||| || ||||| Sbjct 844 GAAGGCAACTACTTCGTTGCTCCCGACAAAGCTAGCAACAAACAGGTGACGAAGAGAATG 903 Query 949 GATAGTGG-ATATGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAA 1007 | | | || | ||||| || |||||||||||| | ||| | ||||||||||| | ||| Sbjct 904 GGT-GCGGGACCTGATTCTAAAAGATGGAAATGGGGTACGGCTAAAGACGTTTTCATGAA 962 Query 1008 CGGAGCTTACTTCGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAG-AGCAG 1066 |||||||| ||||||||| |||||| |||| |||| ||| |||||| ||| || || Sbjct 963 CGGAGCTTTCTTCGTGCCGTCTGGC---GGAATAGTCAGGCCATTGTACA-AAGCAGGAG 1018 Query 1067 AGCGGTTTCCGGT-GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCC 1124 || |||||| ||| | | || |||||||||||||||| | |||||||| || |||||||| Sbjct 1019 AGGGGTTTCAGGTCGCC-CATGGCTCTCTCGTCCCTTCT-CTTACTTCCTCTGCCGGTCC 1076 Query 1125 TCTCCATTGCTATTCCGGCAGAATTTGCTAA 1155 ||||| |||||| | ||||| ||||||||| Sbjct 1077 TCTCCGTTGCTACGCAGGCAGGATTTGCTAA 1107 Score = 425 bits (230), Expect = 3e-118 Identities = 392/470 (83%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 26 TTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTTGTAGAGGCTGCTTACAGTAATGGT- 84 ||||||||||||| ||| ||||| |||||||| |||||||| ||||| | |||||| | Sbjct 23 TTTCACTTCTCTTGGCAACTTTCGCTTCTTCTCTTGTAGAGACTGCTCATAGTAATAATG 82 Query 85 TATACCATTCCCAAACTATTACCAAACCCT-ATCGATTCTTGCTGGCGAAGAAACCCTTA 143 || ||||| |||| ||| || ||| | || ||| |||||||||||||||||||| | Sbjct 83 TA-ACCATCCCCAGGGTATCACTAAA-TGTAATTGATGCTTGCTGGCGAAGAAACCCTAA 140 Query 144 TTGGGCGTCTAACCGTCGTGCACTAGC-CGATTGCGCGGTAGGGTTTGGAAAATCTGCGG 202 |||||| ||||||||| || ||||| | ||||||||||||||| || ||| | || | Sbjct 141 TTGGGCCACTAACCGTCAAGCCCTAGCAC-ATTGCGCGGTAGGGTACGGGAAAGCCGCAG 199 Query 203 TTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAACCCATCAGACGACCCTGAAAA-C 261 | ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| | || | Sbjct 200 TAGGGGGGAAACACGGGCCGATCTACGTGGTTACAAACCCATCAGACAACCCT-ACAAGC 258 Query 262 CCTAGACCCGGAACACTGA-GATACGCAGTGATCCAATCTAAACCATTATGGATCACATT 320 ||||| |||||||| || | ||| || |||| |||| | |||||| ||||||||||||| Sbjct 259 CCTAGCCCCGGAAC-CTTAAGATTTGCGGTGACCCAACCAAAACCACTATGGATCACATT 317 Query 321 TGCACGTGACATGGTCATAGTGTTGCGTAA-CGAGCTCATCATGAACAGCTACAAGACGA 379 |||||||||||||| ||||||||| || ||||||||| |||||||||||||||||| Sbjct 318 CGCACGTGACATGGTGATAGTGTTGAA-AAGCGAGCTCATGGTGAACAGCTACAAGACGA 376 Query 380 TTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACCATGCATAACGATCCAACATG 439 | ||||| |||||||| ||||| ||||| ||| | || |||||| ||| |||| |||| | Sbjct 377 TCGATGGGAGAGGGGCAAAAGTTGAAATAGCCAACGGGCCATGCTTAAGGATCAAACAAG 436 Query 440 TGAGCCATGTCATTATACATGGGATAAGTATCCATGATTGTAAACCGGGT 489 |||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 437 TGAGCCATGTCATTATACATGGTATTAGTATCCATGATTGTAAACCAGGT 486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43078896210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5