BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11925.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471343 jgi|Araly1|471343|fgenesh2_kg.1__1297__AT1G11925.1 987 0.0
> Ahg471343 jgi|Araly1|471343|fgenesh2_kg.1__1297__AT1G11925.1
Length=770
Score = 987 bits (534), Expect = 0.0
Identities = 721/805 (90%), Gaps = 37/805 (5%)
Strand=Plus/Plus
Query 1 CATCTAAAAACATTCATACACATAC-AAACACACGAAAATACATCCCAATTCTaaaaaaa 59
|||||||||| |||||||||||||| ||||| ||| |||||||| || | ||
Sbjct 1 CATCTAAAAATATTCATACACATACAAAACAAACGCAAATACAT-CC----C------AA 49
Query 60 TTGTTTTTTCAATTTTTCTCCTTTGATTTCTTAAAAGAAGATCCACAACAACAAGAATGA 119
|||||||| ||| |||||||||||||||||||||||||| | ||||
Sbjct 50 ---TTTTTTCAGTTTCTCTCCTTTGATTTCTTAAAAGAAGAT---------C----ATGA 93
Query 120 ATACATTCAAGATATCATATTTCATTATGGTGCTCATAATGGTCTTAGCCATTGCTATAA 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 ATACATTCAAGATATCCTATTTCATTATGGTGCTCATAATGGTCTTAGCCATTGCTATAA 153
Query 180 CATTTAGCGAGCCGCTAACGGTTGAAGCAAAACATCAACACAAATATGGTTGGGGGATAG 239
|||||||||| ||| ||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 154 CATTTAGCGAATCGCCAACGGTTGAGGCGAAACATCAACACAAATATGGTAGGGGGATAG 213
Query 240 CCGCTTCTGCAAGGAACAAAGGTAGGAAACATTTAGGTGCAACATTGACATGTGACAAAA 299
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 214 CCGCTTCTGCAAGGAACAAAGGTAGGAAACCTATAGGTGCAACAATGACATGTGACAAAA 273
Query 300 GCTCCAAGGTATGTCGTCTCAAAGGCAGTCCAGGTCGTAATTGTTGTCGTAAGAAGTGTG 359
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 274 GCTCCAAAGTATGTCGTCTCAAAGGCAGTCCAGGTCGTAATTGTTGTCGTAAGAGGTGTG 333
Query 360 TCGATTTGAGGACCAACAAATTGAACTGCGGAAGATGTGGAAAAAGCTGCCAATACTCGG 419
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 334 TCGATTTGAGGACCAACAAATTGAATTGCGGAAGATGTGGAAAAAGCTGTCAATACTCGG 393
Query 420 AGGTTTGCTGCAACGGATATTGTGTAAACCCAATGTTTGATAGGAGACATTGTGGAGGTT 479
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 AGATTTGTTGCAACGGATATTGTGTAAACCCAATGTTTGATAGGAGACATTGTGGAGGTT 453
Query 480 GCTTTAAGAAGTGCAAGAAAGGGAGATCGTGCGCCTATGGGATGTGCAGCTATGCTTAAA 539
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 454 GCTTTAAGAAGTGCAAGAAAGGGAGATCGTGTGCCTATGGGATGTGCGGCTATGCTTAAA 513
Query 540 GAAAAAATATGGGATAAAGGTCACTAAGGAAAAATAATTTTAATTTATTGGTTGAAATTG 599
|||| ||| ||| ||||| |||| || |||| ||| ||||||||||||||| ||||||
Sbjct 514 GAAACAATGTGGTATAAAAGTCATTAT--AAAA-TAAGTTTAATTTATTGGTTTAAATTG 570
Query 600 GATTACATTCCCTTTATATTACATACACTTCGGAATTAAAAGATAATATAGCTAGCTTAC 659
||||| ||| | ||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 571 GATTATATT---T--ATATTACTTACACTTCGAAATTAAAAGATTATATAGCTAGCTTAC 625
Query 660 ATAACGGTCTAGTACTTGTTCTTAAAGATATATAGGTCTTGTAAAAGTTTGTCATCACTA 719
||||||||| |||||||||| ||||||||| | |||||||||||||||||||||||| ||
Sbjct 626 ATAACGGTCGAGTACTTGTTATTAAAGATAGAAAGGTCTTGTAAAAGTTTGTCATCATTA 685
Query 720 TTACATTGTTAAATTTA-TTTATATGCACATGTCACATGTAACAATCCAATGTATTATTA 778
||| |||||||||||| |||||| || |||||| ||||||||||||| |||||||||||
Sbjct 686 TTATATTGTTAAATTTTGTTTATACGCCCATGTCTCATGTAACAATCCCATGTATTATTA 745
Query 779 TTGAATAAAGTTTGAATTGATTAGT 803
|||||||||||||||||| ||||||
Sbjct 746 TTGAATAAAGTTTGAATTTATTAGT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5