BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11930.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920022 jgi|Araly1|920022|scaffold_101303.1 1227 0.0
> Ahg920022 jgi|Araly1|920022|scaffold_101303.1
Length=769
Score = 1227 bits (664), Expect = 0.0
Identities = 735/770 (95%), Gaps = 2/770 (0%)
Strand=Plus/Plus
Query 117 AACACGTGGCGGATTCTACTATGTCGGCGGCGGCGATTGATGGTGTGGCGGCTCTGAGAT 176
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1 AACACGTGGCGGATTCTACTATGTCTGCGGCGGCGATTGATGGCGTGGCGGCTTTGAGAT 60
Query 177 CGGTGTTTCAGCGGGTAAACCAGGCGGCGGAGAAAGCGGGTCGTGGGTCGGATCAG-ATA 235
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||
Sbjct 61 CGGTGTTTCAGCGGGTAAACCAAGCGGCGGAGAAAGCGGGTCGTGTGTCGGATC-GAATA 119
Query 236 CGGGTCGTAGCGGTGAGTAAGACGAAACCAGTTTCTCTGATTCGCCAAGTATACGACGCT 295
||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 120 CGGATCGTAGCGGTGAGCAAGACGAAACCAGTTTCTCTGATTCGTCAAGTATACGAGGCT 179
Query 296 GGTCAGAGGTCTTTTGGAGAGAATTATGTGCAAGAGATCATTGAGAAGGCACCTCAGCTT 355
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGACATAGGTCTTTTGGTGAGAATTATGTGCAAGAGATCATTGAGAAGGCACCTCAGCTT 239
Query 356 CCAGAAGATATAGAGTGGCATTTCATTGGGAATTTGCAGAGCAACAAAGTGAAGCCTTTG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CCAGAAGATATAGAGTGGCATTTCATTGGGAATTTGCAGAGCAACAAAGTGAAGCCTCTG 299
Query 416 CTATCTGGTGTTCCTAACCTTGTGACCGTGGAAAGTGTTGATGATGAAAAGATTGCAAAT 475
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 300 CTATCTGGAGTTCCTAACCTTGTGATGGTGGAAAGTGTTGATGATGAAAAGATAGCAAAT 359
Query 476 ATGCTTGATCGTGTGGTTGGTAATATCGGAAGAAAGCCCTTGAAGGTATTTGTCCAAGTG 535
|||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 360 ATGCTTGATCGTGTGGTTGGAAATATCGGTAGAAAGCCCTTGAAGGTCTTGGTCCAAGTG 419
Query 536 AATACCAGTGGTGAAGACTCTAAATTCGGCGTGGAACCCTCGGGATGCGTAGGACTGGCG 595
|| |||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 420 AACACCAGTGGCGAAGAGTCTAAGTTCGGCGTGGACCCCTCAGGATGCGTAGGACTGGCG 479
Query 596 AAACACGTGAAGGAAGCTTGCTCGAATCTTGAGTTTTCTGGTTTGATGACAATAGGGATG 655
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 AAACATGTGAAGGAAGCTTGCTCGAATCTTGAGTTTTCTGGATTGATGACAATAGGGATG 539
Query 656 GCTGATTACACTTCAACCCCAGAGAATTTCAAGTTGCTTGCGAAATGCAGAAGTGAAGTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTGATTACACTTCAACCCCAGAGAATTTCAAGTTGCTTGCGAAATGCAGAAGTGAAGTG 599
Query 716 TGTAAGGAGCTTGGAATACCGGAGGAGCAATGTGAGCTATCTATGGGGATGTCTGGTGAC 775
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTAAAGAGCTTGGAATACCGGAGGAGCAATGTGAGCTATCTATGGGGATGTCTGGTGAC 659
Query 776 TTTGAACTAGCATTGCAGATTGAACTGGGAAGCACAAATGTGAGAATAGGATCTACTATT 835
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 TTTGAACTAGCTTTACAGATTGAACTGGGAAGCACAAATGTGAGAATAGGATCTACAATT 719
Query 836 TTCGGGGCGAGAGAGTATCCTAAGAAGTAATGATGTAAACTACTGAGTGA 885
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTCGGGGCGAGAGAGTATCCTAAGAAGTAATGATGTAAACTACTGAGTGA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5