BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11940.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312224 jgi|Araly1|312224|fgenesh1_pm.C_scaffold_1001004 1934 0.0
Ahg475115 jgi|Araly1|475115|fgenesh2_kg.2__245__AT1G62305.1 791 0.0
> Ahg312224 jgi|Araly1|312224|fgenesh1_pm.C_scaffold_1001004
Length=1152
Score = 1934 bits (1047), Expect = 0.0
Identities = 1117/1152 (97%), Gaps = 0/1152 (0%)
Strand=Plus/Plus
Query 133 ATGACGAAGAAATCACAGCCGCAGATTCCGCCTCCATTGTCCCGTCGCGGCGGCGTCGTG 192
||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 1 ATGACGAGGAAATCGCAGCCGCAGATTCAGCCTCCATTGTCACGTCGCGGCGGCGTAGTG 60
Query 193 TGGCTGGGATGGAAACTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTTCTT 252
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TGGCTAGGATGGAAGCTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTCCTC 120
Query 253 CGAATCCAACTACAGTACAATTCCTTCACGACATTGTCGTTTCCACTCTCCGTCGCGAGA 312
|||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||
Sbjct 121 CGAATCCAACTACAGTACAATTCCGTCACGACATTGCCGTCGCCGCTCTCCGTCGCGAGA 180
Query 313 TCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTA 240
Query 373 GCTCGCCGTGATCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGAGTGGATCAT 432
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GCTCGCCGTGACCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGTGTGGATCAT 300
Query 433 GCGAATTTCTCAATTTATATACATTCAGTACCTGGTTTCGTGTTCAATGAAGAAACTACA 492
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 301 GCGAATTTCTCAATTTATATACATTCATTACCTGGTTTCGTGTTCAATGAAGACACTACA 360
Query 493 CGATCACAGTATTTCTATAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAA 552
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGATCACAGTATTTCTACAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAA 420
Query 553 TCAAGCATGATTGAAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAAT 612
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCAAGCATGATTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAAT 480
Query 613 CAAAGATTTGTTCTTCTCTCTGACAGATGTGCTCCATTATATGACTTTGGCTATATATAC 672
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CAAATATTTGTTCTTCTCTCTGACAGATGTGCTCCGTTATATGACTTTGGCTATATATAC 540
Query 673 AAATATCTTATCTCTTCACCGAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA 732
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGATATCTTATCTCTTCACCAAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA 600
Query 733 CGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGAAAAGGATCCCAG 792
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 CGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGGAAAGGATCCCAG 660
Query 793 TGGATAGCTTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCA 852
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGATAGATTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCA 720
Query 853 GTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTT 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTT 780
Query 913 CTTAAACAGAAGCGACGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACG 972
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTAAACAGAAACGGCGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACG 840
Query 973 ATGCAAGGACTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGTATGGAACGTT 1032
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 ATGCAAGGGCTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGCATGGAACGTT 900
Query 1033 TCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCC 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCC 960
Query 1093 GGCCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCT 1152
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCT 1020
Query 1153 CGAACGGAATGGTGTAAGGCGGATTCGAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAG 1212
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 CGAACGGAATGGTGTAAGGCGGATTCAAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAG 1080
Query 1213 TTCACGAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAGCAAAC 1272
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 TTCACAAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAACAAAC 1140
Query 1273 AAAACCTTATAA 1284
| ||||||||||
Sbjct 1141 ACAACCTTATAA 1152
> Ahg475115 jgi|Araly1|475115|fgenesh2_kg.2__245__AT1G62305.1
Length=1422
Score = 791 bits (428), Expect = 0.0
Identities = 824/1009 (82%), Gaps = 52/1009 (5%)
Strand=Plus/Plus
Query 298 CTCTCCGTCGCGAGATCTCAG-A-CACCGCTTC-ACAAATACTCCGGTGATCGTCCCAAG 354
||||||||||||||||||| | | | |||| || ||||||||||| |||||||||||
Sbjct 264 CTCTCCGTCGCGAGATCTC-GTATC-CCGC-TCGTTAAATACTCCGGCGATCGTCCCAAA 320
Query 355 CTCGCTTTCC-TTTTCTTAGCTCGCCGTGATCTCCCACTTGATTTTATGTGGGATAGATT 413
||||| |||| ||||| | |||||||||||| | || ||||||||| | |||||||||||
Sbjct 321 CTCGCGTTCCTTTTTC-TCGCTCGCCGTGATTTGCCTCTTGATTTTCTCTGGGATAGATT 379
Query 414 CTTCAAGGGAGTG--GATCATGCG-AATTTCTCAATTTATATACATTCAGTACCTGGTTT 470
|||||| || || ||||| | | ||||||||||| |||||||||||| ||||||||||
Sbjct 380 CTTCAA--GAATGCAGATCA-GAGAAATTTCTCAATCTATATACATTCAATACCTGGTTT 436
Query 471 CGTGTTCAATGAAGAAACTACACGATCACAGTAT-TTCTATAATCGCCAATTGAACAATA 529
||| ||| ||||| | ||| ||||||||| | ||||| |||||||||||||| ||||
Sbjct 437 CGTATTCGATGAATCCTCCACAAGATCACAGT-TCTTCTACAATCGCCAATTGAAGAATA 495
Query 530 GCATTAAGGTAGTATGGGGAGAATCAAGCATGATTGAAGCAGAAAGATTGTTGCTTGCAT 589
|||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 496 GCATCCAGGTAGTTTGGGGAGAATCAAGCATGATTGCAGCAGAAAGATTGTTGCTTGCAT 555
Query 590 CTGCTTTAGAGGATCACTCC-AATCAAAGATTTGTTCTTCTCTCTGACAGATGTGCTCCA 648
||||||| || |||| || | |||||||||||||||||| | ||||| || |||| |||
Sbjct 556 CTGCTTTGGAAGATC-CTTCGAATCAAAGATTTGTTCTTTTGTCTGATAGCTGTGTTCCT 614
Query 649 TTATATGACTTTGGCTATATATACAAATATCTTA-TCTCTTCACCGAGGAGTTTTGTGGA 707
||||| |||||||| || ||||||| |||||| | | |||||||| | ||||||||| ||
Sbjct 615 TTATACGACTTTGGTTACATATACAGATATCT-AGTTTCTTCACCAAAGAGTTTTGTAGA 673
Query 708 TAGTTTTCTTCATACTAAAGAGACACGGTACAGTGTGAAAATGTCTCCTGTCATACCTGA 767
|| || ||| ||| || || | ||| |||| ||||||||| |||||| |||| ||
Sbjct 674 CAGCTTCCTTGATA--AA-GATAAACGCTACACCATGAAAATGTTTCCTGTTATACG-GA 729
Query 768 A-GAGAAATGGCGAAAAGGATCCCAGTGGATAGCTTTGATCAGAAGTCATGCAGAGGTCA 826
| |||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||
Sbjct 730 AAGAGAAATGGCGAAAAGGATCTCAGTGGATATCATTGATCAGAAGCCATGCAGAGGTCA 789
Query 827 TTGTAAATGATGGTATC-GTATTCCCAGTTTTTAAGGAATTCTGCAAGAGATGTCCACCT 885
|||| ||||||| || | ||||||||||||||| || |||| |||||| ||| || |||
Sbjct 790 TTGTTAATGATGATA-CAGTATTCCCAGTTTTTCAGAAATTTTGCAAGCGATCTCTACCA 848
Query 886 TTAGG-TACCA-ATGAGGCAT-GGTTGTTTCTTAAACAGAAGCGACGCAACTGCATCCCC 942
| || | ||| | || || || | | ||||||| ||| ||||| ||||||||| ||
Sbjct 849 CT-GGATCCCAGAA-AGA-ATTGGCTATATCTTAAAAAGAGGCGACACAACTGCATTCCT 905
Query 943 GATGAACACTATGTGCAAACAT-TGCTTACGATGCAAGGACTAG-AGAGTGAAATGGAAC 1000
|||||||||||||||||||| | |||| || |||| || || | | | |||||||||||
Sbjct 906 GATGAACACTATGTGCAAAC-TCTGCTAACAATGCGTGG-CTTGGACAATGAAATGGAAC 963
Query 1001 GAAGAACAGTGACATACACTGT-ATGGAACGTTTCAGGTACAAAATATGAAGCCAAATCT 1059
| ||||||||||||||||| | ||||||| | |||| | |||| |||||| ||||||
Sbjct 964 GGAGAACAGTGACATACAC-GACATGGAACCTATCAGCAAAAAAAGCTGAAGCTAAATCT 1022
Query 1060 TGGCATCC-CGTCACTTTCACAT-TGGAAAACTCCGGCCCTGAGGAAATAAAAGAAATAA 1117
|||||||| | | |||||||||| || | || ||||| | ||||||||| ||| |||||
Sbjct 1023 TGGCATCCTC-TGACTTTCACATCTG-ACAATTCCGGGTCGGAGGAAATACAAGGAATAA 1080
Query 1118 AGAAAAT-AGACCATGTCTATTACGAGTCTGAATCTCGAACGGAATGGTGTAAGGCGGAT 1176
||||||| | ||||||| ||||| || || || | |||||| |||||||| | |||| ||
Sbjct 1081 AGAAAATCA-ACCATGTATATTATGAATCGGAGTATCGAACAGAATGGTGCAGGGCGAAT 1139
Query 1177 TCGAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAGTTCACGA-ATGAAGCTGCTATGCG 1235
|| ||||||||||| |||||||| ||||| ||||||||||| | | || || || |||||
Sbjct 1140 TCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACTAGAGGA-GCCGCAATGCG 1198
Query 1236 -CATTGTGAGTGAAGGACTAATAGGATCATCAGCA-A-ACAA-AACCTT 1280
| || ||||||||||| || ||| ||||||| | | |||| ||||||
Sbjct 1199 TCTTT-TGAGTGAAGGATTATTAGAATCATCAATAGATACAACAACCTT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5