BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11950.1 Length=2955 Score E Sequences producing significant alignments: (Bits) Value Ahg471347 jgi|Araly1|471347|fgenesh2_kg.1__1301__AT1G11950.1 3999 0.0 Ahg907209 jgi|Araly1|907209|Al_scaffold_0002_290 1184 0.0 Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019 209 8e-53 Ahg920939 jgi|Araly1|920939|scaffold_102220.1 204 4e-51 > Ahg471347 jgi|Araly1|471347|fgenesh2_kg.1__1301__AT1G11950.1 Length=2701 Score = 3999 bits (2165), Expect = 0.0 Identities = 2543/2722 (93%), Gaps = 40/2722 (1%) Strand=Plus/Plus Query 179 AGTTGCTACTAACGGAGT-GATTCTCAAGCATAATGGTGTAAAGGATATTTCTTTAGAAA 237 |||| || |||| ||||| ||| ||||| ||||||||||||||||| ||| | |||| Sbjct 12 AGTTTCTGCTAATGGAGTAAATT-GCAAGCGTAATGGTGTAAAGGATAGTTCACTGGAAA 70 Query 238 CTTGTTGGCCAGAGAAGAAGAAACCGGTTGAGGCAACGAGTCTTAGCAGTGGTTCATCAG 297 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 71 CTTGTTGGCCGGAGAAGAAGAAACCGGTTGAGGCAACGAGTCTTAGCAGCGGTTCATCAG 130 Query 298 ACATAGAAGAAGAGATTAGTGTGGAATGTCCTAAGCGAGTGGCTAATCAAAGACGGAAAC 357 | ||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||| Sbjct 131 ATATAGAAGAAGAGAGTAGTGTGGAATGTCCGAAACCAGTGGCTAATCAAAGACGGAAAC 190 Query 358 GGTCTAAAGCTGATGAGATTAAAACGAAATCTTCAAGAAAGAGGAAATGTGATGATGAGA 417 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 191 GCTCTAAAGCTGATGAGATTAAAGCGAAATCTTCAAGAAAGAGGAAATGTGATGATGAGA 250 Query 418 ACAAGTGTGAAGAGAATGAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACAT 477 | || |||||||| || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 251 AGAAATGTGAAGAAAAGGAGAAGAAGCAGAGGAGCTCTGTAAAAAAGAGAGCAACTACAT 310 Query 478 GGAAAGAAGAAGAAGTTGTTGTTGATGATGAAAAGAAATGCGAACAACAACTCCAACTAG 537 ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| ||| Sbjct 311 GGAAAGAAGAAGAAGTTGTCGATGATGATGAAAAGAAATGCGAACAAGAACTCCAAGTAG 370 Query 538 TTCCTTCCAGCAAGGCAACATCTCG-AAGCAGGAGCAAGAAATCAGTCAGTGTGGATACT 596 |||||| || ||||||||||||||| || |||||||||||| ||| ||||| |||| || Sbjct 371 TTCCTTTCATCAAGGCAACATCTCGTAA-CAGGAGCAAGAACGCAGACAGTGCGGATGCT 429 Query 597 TGGTTGGTT-AACAACGAGATTGATGTTAGCGCTTTGAGTTCGCGTTCTGAGTCTGAACT 655 ||||| ||| | |||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 430 TGGTTAGTTGGA-AACGAGATCGATGTTAGCGCTTCGAGTTCGCGTTCTGAGTCTGAACT 488 Query 656 TTCGGATTCTTATCTGAAAACCGAGTACTTTAATGACTGCAGAAGCATGACAAGGAGTTT 715 |||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 489 TTCGGATTCTCATCTGAAAACTGAGTATTTTAATGACTGCAGACGCATGACAAGGAGTTT 548 Query 716 AAAGGCAAATTTGGGAGAGCTTGCAATTTGCCATCAATGCTCTAAAGGGGAAAGAAGATA 775 ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 549 AAAGGCAGATTTGGGAGAGCTTGCGATTTGCCATCAATGCTCGAAAGGGGAAAGAAGATA 608 Query 776 TCTTTTCATTTGCACCTTTTGTGAAGTGAGGTTGTATTGTTTTCCATGCATAAAGAAATG 835 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 609 TCTTTTCATTTGCACCTTTTGTGAAGAGAGGTTGTATTGTTTTCCATGTATAAAGAAATG 668 Query 836 GTATCCCCATTTGTCCACGGATGATATCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTG 895 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 669 GTATCCCCATTTGTCCACGGATGATGTCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTG 728 Query 896 CAACTGCTGCACATGTTTGCACTCTAGTGGTTTAATCGAGACATCTAAGAGAAAGCTCGA 955 |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 729 CAACTGCTCCACATGTTTGCACTCAAGTGGTTTAATCGAGACATCAAAGAGAAAGCTCGA 788 Query 956 TAAATACGAAAGATTTTATCATCTTCGCTTCTTGATTGTGGCGATGCTTCCTTTCCTGAA 1015 ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| Sbjct 789 TAAGTACGAAAGATTTTATCATCTTCGATACTTGATTGTGGCGATGCTTCCTTTCTTGAA 848 Query 1016 AAAGTTATGCAAAGCACAAGATCAAGAAATCGAAACCGAGGCTAAGGTTCAAGATTCAAT 1075 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 849 AAAGTTATGCAAAGCACAAGATCAAGAAATCGAAACCGAGGCTAAGGTTCAAGGTTCAGT 908 Query 1076 GGCTTCTCAAGTTGATATATCCGAGAGTCTATGCTCAAATGAAGAGCGTGTCTTCTGTAA 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 GGCTTCTCAAGTTGATATATCCGAGAGTCTATGCTCAAATGAAGAGCGTGTCTTCTGTAA 968 Query 1136 CCACTGTGCAACATCAATTGTTGACTTGCATCGAAGCTGTCCAAAGTGTTCATAT-GAA- 1193 ||| |||||||| |||||||| ||||||||||||||||||||||||||||| | | ||| Sbjct 969 CCATTGTGCAACCTCAATTGTGGACTTGCATCGAAGCTGTCCAAAGTGTTCCT-TCGAAC 1027 Query 1194 TTGTGTCTGAACTGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCTGACCGCCCGGAATGT 1253 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1028 TT-TGTCTGAACTGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCAGAACGCCCGGAATGT 1086 Query 1254 CAGCTACAATTCGAGTACAGAGGGACCCGGTATATACATGGCGAAGCTGCAGAACCGAGC 1313 ||||||||||||||||| | ||||| |||||| |||||||||||| ||||||||||||| Sbjct 1087 CAGCTACAATTCGAGTATAAAGGGAGCCGGTACGTACATGGCGAAGATGCAGAACCGAGC 1146 Query 1314 TCTTCTTCTGTTTCCGAGGATGAAACTAAAACTCCATCCATCAAGTGGAATGCTGATGAA 1373 |||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||||| Sbjct 1147 TCTTCTTCTGTTTCTGAGGATGAAACTACAATTCCATCCATGAAGTGGAATGCTGATGAA 1206 Query 1374 AATGGAAGCATACGGTGTGCGCCAAAAGAGCTAGGAGGTTGCGGGGACTCTGTGCTGGAG 1433 ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||| Sbjct 1207 AATGGAAGCATACCGTGTGCGCCAAAAGAGCTAGGCGGTTGCGGTGACTCTGTGTTGGAG 1266 Query 1434 CTTAAGCGAATCTTACCAGTGACTTGGATGTCAGATTTGGAGCAAAAGGCAGAAACATTC 1493 |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1267 CTTAAGCGAATCCTACCCGTGACTTGGATTTCAGATTTGGAGCAAAAGGCAGAAACATTC 1326 Query 1494 TTAGCCTCTTATAGTATCAAACCGCCAATGTCATATTGTAGATGTTCTTCTGATAT-GAG 1552 |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1327 TTAGCCTCTTATTGTATCAATCCGCCAATGTCATATTGTAGATGTTCTTCTGATATGGAG 1386 Query 1553 -T-AGTATGAAGAGGAAGGCAGCTTCGAGGGACGGATCTAGTGACAATTACCTTTATTCT 1610 | |||||||||||| |||||||||||||| ||| ||| |||||||||||||| || ||| Sbjct 1387 ATGAGTATGAAGAGGCAGGCAGCTTCGAGGAACGAATCCAGTGACAATTACCTCTACTCT 1446 Query 1611 CCTGATTCTTTGGATGTCCTGAAGCAAGAAGAACTTCTGCATTTCCAAGAGCATTGGTCC 1670 || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1447 CCCGATTCTTTTGATGTCCTGAAGCAAGAAGAGCTTCTGCATTTCCAAGAGCATTGGTCC 1506 Query 1671 AAAGGTGAACCAGTGATTGTTCGAAATGCTCTTAACAACACAGCTGGTTTAAGCTGGGAG 1730 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1507 AAAGGTGAACCAGTGATTGTTCGAAACGCTCTTAACAACACAGCTGGTTTAAGCTGGGAG 1566 Query 1731 CCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTGATTCAGCAATTAGCTCTAATATG 1790 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1567 CCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTGATTCAGCAAGTAGCTCTACGATG 1626 Query 1791 TCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTGAAGATAAATACTCTATGT 1850 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1627 TCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTGAAGATCAATACTCGATGT 1686 Query 1851 TTCTTTGAAGGATATAGCAAAGGAAGAACATATGAAAACTTCTGGCCTGAGATGCTGAAG 1910 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 1687 TTCTTTGAAGGATATAGCAAAGGAAGAAGATATGATAACTTCTGGCCTGAGATGCTGAAG 1746 Query 1911 CTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTTACCTCGTCACTGCGATGAG 1970 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1747 TTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTTACCTCGTCACTGTGATGAG 1806 Query 1971 TTCATTTCCGCATTACCATTTCAAGAATACAGCGATCCTAGATCAGGAATTCTCAACATT 2030 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1807 TTCATTTCCGCATTACCGTTTCAAGAATACAGCGATCCTAGATCCGGAATTCTCAACATT 1866 Query 2031 GCTACAAAACTTCCTGAAGGACTTCTTAAACCAGATCTTGGTCCAAAAACTTATGTTGCA 2090 ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1867 GCTACTAAACTTCCTGAAGGACTTCTTAAACCAGATCTTGGTCCAAAAACCTACATTGCA 1926 Query 2091 TATGGGACTTCAGATGAGCTCGGTAGAGGAGATTCAGTCACTAAGCTTCACTGTGATATG 2150 ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 1927 TATGGGACTTCAGATGAGCTCGGTAGAGGCGATTCTGTGACTAAGCTTCACTGTGATATG 1986 Query 2151 TCAGATGCTGTTAATATTCTGATGCATACTGCTGAAGTAACACTAAGTGAGGAGCAAAGG 2210 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1987 TCGGATGCGGTTAATATTCTGATGCATACTGCTGAAGTAACACTAAGTGAGGAGCAAATG 2046 Query 2211 TCTGCAATTGCAGATTTGAAACAGAAACATAAGCAACAGAATGAGAAAGAGCTTCAGGAG 2270 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2047 TCTGCAATTGAAGATTTGAAACAGAAACATAAGCAACAGAATGAGAAAGAGCTTCAGGAG 2106 Query 2271 CAAAATGGTTTAGAGGAAGAAGAGGTTGTGAGTGATGAGATTGTGGTTTATGATGAAACA 2330 |||| | | || || || |||||| | || | | | |||| ||| | Sbjct 2107 CAAA-T--T---GATGA-GA-----TTGTGA-T-AT-A--T-G------ATGA--AAA-A 2139 Query 2331 AGTGGTGCACTTTGGGACATCTTTAAAAGAGAAGATGTTCCTAAGCTTGAAGAGTATCTA 2390 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2140 GGTGGTGCACTTTGGGACATCTTTAGAAGAGAAGATGTTCCTAAGCTTGAAGAGTATCTA 2199 Query 2391 AGGAAGCATTGCATAGAATTCAGACATACTTATTGCTCTCGTGTTACAAAGGTGTATCAT 2450 ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 2200 AGGAAGCATTGCAAAGAATTCAGACATACTTTTTGCTCTCCTGTTACAAAGGTGTATCAT 2259 Query 2451 CCAATACATGATCAGTCATATTTCTTAACCGTGGAGCATAAAAGAAAACTCAAGGCAGAA 2510 |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 2260 CCAATACATGATCAATCATGTTTCTTAACCGTGGAGCATAAACGAAAACTCAAGGCAGAA 2319 Query 2511 TTTGGGATTGAGCCATGGACATTTGTGCAAAAGCTAGGAGAAGCAGTGTTTATTCCAGCA 2570 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 2320 TTTGGGATTGAGCCATGGACATTTGTGCAAAAACTAGGAGAAGCAGTGTTTATTCCCGCG 2379 Query 2571 GGTTGTCCTCATCAAGTTCGGAATCTCAAGTCGTGCACAAAGGTAGCTGTTGATTTTGTT 2630 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2380 GGTTGTCCACATCAAGTTCGGAATCTCAAGTCTTGCACAAAGGTAGCTGTTGATTTTGTT 2439 Query 2631 TCCCCTGAAAACATCGATGAGTGTCTCCGTTTGACTGATGAGTTTCGACAACTCCCTAAG 2690 ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2440 TCCCCAGAGAACATCGATGAGTGTCTCCGTTTGACTGATGAGTTTAGACAACTCCCTAAG 2499 Query 2691 AACCATAAAGCCAGAGAAGACAAACTTGAGATAAAAAAGATGGTGATCTATGCAGTTGAA 2750 |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2500 AACCATAAGGCTAGAGAAGACAAACTTGAGATAAAAAAGATGGTGATCTATGCAGTGGAA 2559 Query 2751 CAAGCTCTGAAAGAAGTGGAGACATTATTGCTAGATCGCAGCTAAAAGCTCTATAGCTTT 2810 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2560 CAAGCTCTGAAAGAAGTGGAGACATTGTTGCTAGATCGCAGCTAAAAGCTCTATAGCTTT 2619 Query 2811 GTTGTTGTAGGATTAACAGCAGATTTTGTAGAATTGTTAAAGCCATGGCTATTGTAGTTG 2870 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2620 GTTGTTGTAGGATTGACAGCAGATTTTGTAGGATTGTTAAAGCCATGGCTATTGTAGTTG 2679 Query 2871 GCTTTTGCTGTGATATATGTAT 2892 |||||||||||||||||| ||| Sbjct 2680 GCTTTTGCTGTGATATATATAT 2701 > Ahg907209 jgi|Araly1|907209|Al_scaffold_0002_290 Length=2796 Score = 1184 bits (641), Expect = 0.0 Identities = 1604/2054 (78%), Gaps = 126/2054 (6%) Strand=Plus/Plus Query 739 CAATTTGCCATCAATGCTCT-AAAGGGGAAA-GA-AGATATCTTTTCATTTGCACCT-TT 794 ||||||| ||||| |||| | ||||| |||| || | | | ||| ||||||||| | Sbjct 650 CAATTTGTCATCAGTGCT-TGAAAGGAGAAAGGATA-ACA-CTTCTCATTTGCA-GTGAA 705 Query 795 TGTGAAGTGAGGTTGTATTGTTTTCCATGCATAAAGAAATGGTATCCCCATTTGTC-CAC 853 |||||| || | |||||||| || ||| |||| |||||||||||| ||| | || | Sbjct 706 TGTGAACAGACGATGTATTGTCTTAAATGTATAAGGAAATGGTATCCACATCTATCTGA- 764 Query 854 GGATGATATCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTGCAACTGCTGCACATGTTT 913 ||||||| | || |||||||||| |||||||| || ||| || ||| | | ||| || Sbjct 765 GGATGATGTTGTTCAAAAATGTCCTTTTTGCCGCCAAAATTGTAATTGCAGTAAATGCTT 824 Query 914 GCACTCT-AGTGGTTTAATCGAGACATCTAAGA-GAAAGCTCGA-TAAATACGAAAGATT 970 ||| | | | ||||||||||||||||| |||| | || ||| | || | |||||| Sbjct 825 GCA-TTTGAACGGTTTAATCGAGACATCGAAGAGGGAA-CTC-ACGAATTGTGAAAGACG 881 Query 971 TTATCATCTTC-GCTTCTTGATTGTGGCGATGCTTCCTTTCCTGAAAAAGTTATGCAAAG 1029 | |||||| | | | |||| || |||||||||||| ||||| ||||||| |||| Sbjct 882 TCGTCATCTCCAG-TACTTGGTTACATTGATGCTTCCTTTTCTGAATAAGTTATCCAAA- 939 Query 1030 CACAAG-ATCAAGAAATCGAAACCGAGGCTAAGGTTCAA-GATTCAATGGCTTCTC-AAG 1086 | || | ||||| || || ||||| ||||||||| |||| | || |||| | ||| Sbjct 940 TTCCAGAAGCAAGAGATTGAGTTTGAGGCAAAGGTTCAAGGATT-ACTGCCTTC-CGAAG 997 Query 1087 TTGATATATCCGAGAGTCTATGCTCA-AATGAAGAGCGTGTCTTCTGTAACCACTGTGCA 1145 || | ||| | |||| || || | | ||| || ||||| | |||| | || |||||| Sbjct 998 TTAAAATAACTGAGACAATAAACT-ACACTGATGAACGTGTATACTGTGATCATTGTGCA 1056 Query 1146 ACATCAATTGTTGACTTGCATCGAAGCTGTCCAAAGTGTTCATATGAATTGTGTCTGAAC 1205 || ||||||| |||||||| |||||||| |||||||| || |||||| | ||| | || Sbjct 1057 ACTTCAATTGAGGACTTGCACCGAAGCTGCCCAAAGTGCTCTTATGAACTATGTTTAAAG 1116 Query 1206 TGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCTGACCGCCC-GGAATGTCAGCTACAATT 1264 || || |||||||| |||| ||| | ||||||||| ||||| | |||| || ||| ||| Sbjct 1117 TGCTGTCAAGAGATTCGTGAAGGATCGCTTTCTGAACGCCCTGAAATG-AAGTTAC-ATT 1174 Query 1265 CGA-G-T-ACAGAGGGA-CCCGGTATATACATGG---CGA-AGCTGCAGAACCGA-GCTC 1315 | | | | ||| ||| || ||||| || || || | | || ||||| | |||| Sbjct 1175 --ATGTTGATAGA-GGATATCGATATATGCAGGGTTTAGATA-CCGCGGAACC-AGGCTC 1229 Query 1316 TTCTTCTGTTTCCG-AG--GATGAAACTAAAACTCCATCC-A-TC-AAGTGGAATG-C-T 1367 ||||| ||| | || || ||| || ||| |||||| | | |||||| | | | | Sbjct 1230 CTCTTCCACTTCTGAAGACGAAGAAGCT--AAC-CCATCCGACGCTAAGTGG-A-GCCTT 1284 Query 1368 GATGAAAATGGAAGCAT-ACGGTGTGCGCCA-AAAGAGCTAGGAGGTTGCGGGGACTCTG 1425 | ||| ||||||||||| || ||||| ||| ||| | ||||| ||||| || || | || Sbjct 1285 GGTGATAATGGAAGCATCAC-TTGTGCACCAGAAA-ATCTAGGTGGTTGTGGTGATTGTG 1342 Query 1426 TGCTGGAGCTTAAGCGAATCTTACCAGTGACTTGGATGTCAGATTTGGAGCA-AAAGGCA 1484 |||| ||||||||||| ||| ||||| |||| ||||||||||| || ||||| ||| ||| Sbjct 1343 TGCTAGAGCTTAAGCGGATCCTACCACTGACGTGGATGTCAGACTTAGAGCACAAA-GCA 1401 Query 1485 GAAACATTCTTAG-CCTCTTATAGTATCAAACCGCCAATG-TCATATTGTAGATGTTCTT 1542 || || ||||| | | || || | ||| | || |||| | | | ||||| ||||||| Sbjct 1402 GAGACTTTCTT-GTCATCATACAATATTAGCCCTAGAATGTTGA-ACTGTAGGTGTTCTT 1459 Query 1543 C-TGATATGA--GTAGTATGA-AGAGGAAGGCAGCTTCGAGGGAC-GGATCTAGTGACAA 1597 | | | | || | || |||| | ||||| |||||||||| |||| ||| |||||||| Sbjct 1460 CTTTAGA-GACCG-AG-ATGACA-AGGAAAGCAGCTTCGA-GGACAAAATCGAGTGACAA 1514 Query 1598 TTACCTTTAT-TCTCCTGATTCT-TTGGATGTCCTGAAGCAAGAAGAACTTCTGCATTTC 1655 ||||||| | | |||||| ||| |||| |||| ||||| |||||| ||||| ||||| Sbjct 1515 CTACCTTT-TCTGTCCTGAATCTCTTGG-TGTCTTGAAGGAAGAAGGGCTTCTTCATTTT 1572 Query 1656 CAAGAGCATTGGTCCAAA-GGTGAACCAGTGATTGTTC-GAAATGCTCTTAACAACACAG 1713 |||||||||||| |||| || |||||||| || | || | || || ||| | |||||| Sbjct 1573 CAAGAGCATTGG-GCAAACGGCGAACCAGTAATCG-TCAGGAACGCCCTTGATAACACAC 1630 Query 1714 CTGGTTTAAGCTGGGAGCCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTG-ATTCA 1772 ||||||||||||||||||| ||||| ||||||||||||||||| || |||| || ||||| Sbjct 1631 CTGGTTTAAGCTGGGAGCCGATGGTTATGTGGCGGGCTTTATGCGAAAATG-TGAATTCA 1689 Query 1773 GCAATTAGCTCTAATATGTCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTG 1832 || |||||| | ||||| | |||||||| || ||||| |||||||||||||||||| Sbjct 1690 ACAGCAAGCTCTCAGATGTCCCAAGTCAAAGCAATTGATTGCTTAGCTAATTGTGAGGTG 1749 Query 1833 AAGATAAATACTCTAT-GTTTCTTTGAAGGATATAGCAAAGGAAGAACATATGAAAACTT 1891 |||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1750 GAGATCAATACTC-GTCATTTCTTTGAAGGTTATAGCAAAGGAAGAACATATGAAAACTT 1808 Query 1892 CTGGCCTGAGATGCTGAAGCTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTT 1951 ||||||||||||| ||||||||||||| ||||||||||| || ||||||||| | ||||| Sbjct 1809 CTGGCCTGAGATGTTGAAGCTGAAGGACTGGCCTCCTTCTGATAAGTTTGAAGATCTTTT 1868 Query 1952 ACCTCGTCACTGCGATGAGTTCATTTCCGCATTACCATTTC-AAGAATACAGCGATCCTA 2010 ||||||||| || ||||||||||| ||||| ||||| |||| ||||||| ||| |||||| Sbjct 1869 ACCTCGTCATTGTGATGAGTTCATATCCGCGTTACC-TTTCCAAGAATATAGCAATCCTA 1927 Query 2011 GATCAGGAATTCTCAACATTGCTACAAAACTTCCTGAAGGACTTCTTAAACCAGATCTTG 2070 || | |||||||| |||||||| ||||| |||||||||||| || | ||||||||| ||| Sbjct 1928 GAACCGGAATTCTTAACATTGCAACAAAGCTTCCTGAAGGATTTATCAAACCAGAT-TTG 1986 Query 2071 G-TCCAAAAACTTATGTTGCATATGGGACTTC-AGATGAGCTCGGTAGAGGAGATTCAGT 2128 | ||| |||||||| |||| ||||||| ||| ||||||||| |||||||| ||||| || Sbjct 1987 GGTCCCAAAACTTACATTGCTTATGGGA-TTCCAGATGAGCTTGGTAGAGGCGATTCTGT 2045 Query 2129 CACTAAGCTTCACTGTGATATGTCAGATGCTGTTAATATTCTGATGCATACTGCTGAAGT 2188 ||||||||||| || ||||||||||| || || |||||||||| |||||| || ||||| Sbjct 2046 GACTAAGCTTCATTGCGATATGTCAGACGCGGTGAATATTCTGACGCATACGGCCGAAGT 2105 Query 2189 AACACTAAGTGAGGAGCAAAGGTCTGCAATTGCAG-ATTTGAAACAGAAACATAAGCAAC 2247 ||| |||||| | || |||| || ||| | || | | |||||||||||| ||||||| Sbjct 2106 AACCCTAAGTCAAGAACAAATATCAGCAGTCAAAGCACT-GAAACAGAAACACAAGCAAC 2164 Query 2248 AGAATGA-GAAAGAGCTTCAGGAGCAA--AAT---G--GTTTAGAGGAAGAAGAGGTTGT 2299 |||| | | || ||| |||| ||| | | |||||||||||| ||| Sbjct 2165 AGAAC-ATGTTTGATAAACAG-AGCACTGAATTCTGCAGCAAAGAGGAAGAAGAA-TTGA 2221 Query 2300 G-AGTG--ATGAGATTGTG-GTT-T-A---TGATGAAACAAGTGGTGCACTTTGGGACAT 2350 | || | |||||| || | | | ||| ||||| | |||| ||||||||||| Sbjct 2222 ACA-TGCCA-GAGATTTTGAGCAATGAAAATGACGAAACGGGCAGTGCTCTTTGGGACAT 2279 Query 2351 CTTTAAAAGAGAAGATGTTCCTAAGCTT-GAAGAGTATCTAAGGAAGCATTGC-ATAGAA 2408 |||| ||||| ||||||||||| || ||| |||||||||| ||||||||| | |||| Sbjct 2280 ATTTAGGAGAGATGATGTTCCTAAA-TTAGAAAAGTATCTAAGAAAGCATTGCCA-AGAA 2337 Query 2409 TTCAGACATACTTATTGCTCTCGTGTTACAAAGGTGTATCATCCAATACATGATCAGTCA 2468 || |||||||||||||| | || ||||||||||| | |||||| |||||||| || || Sbjct 2338 TTTAGACATACTTATTGTTGTCCAGTTACAAAGGTTTGTCATCCGATACATGACCAAACA 2397 Query 2469 TATT-TCTTAACCGTGGAGCATAAAAGAAAACTCAAGGCAGAATTTGGGATTGAGCCATG 2527 | | | |||||| ||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 2398 TGCTAT-TTAACCTTGGAGCACAAAAGAAAACTCAAGGCAGAATTTGGGATCGAGCCATG 2456 Query 2528 GACATTTGTGCAAAAGCTAGGAGAAGCAGTGTTTATTCCAGCAGGTTGTCCTCATCAAGT 2587 ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct 2457 GACATTTGTGCAAAAGCTAGGTGAAGCAGTGTTTATTCCTGCGGGTTGTCCTCATCAAGT 2516 Query 2588 TCGGAATCTCAAGTCGTGCACAAAGGTAGCTGTTGATTTTGTTTCCCCTGAAAACATCGA 2647 ||||||||| |||||||||||||| || || ||||| ||||| || || || |||||| | Sbjct 2517 TCGGAATCTAAAGTCGTGCACAAAAGTGGCAGTTGACTTTGTGTCACCAGAGAACATCCA 2576 Query 2648 TGAGTGTCTCCGTTTGACTGATGAGTTTCGACAACT-CCCTAAGAACCATAAAGCCAGAG 2706 ||||||||| ||| |||| || |||||||| ||||| ||| |||||||| || ||||||| Sbjct 2577 TGAGTGTCTGCGTCTGACCGAAGAGTTTCGCCAACTTCCC-AAGAACCACAAGGCCAGAG 2635 Query 2707 AAGACAAACTTGAG 2720 | |||||||||||| Sbjct 2636 AGGACAAACTTGAG 2649 > Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019 Length=792 Score = 209 bits (113), Expect = 8e-53 Identities = 134/144 (93%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 435 GAGAAGAAGCAGAGGAGCTCTGTTAAAAA-GAGAGCAACTACATGGAAAGAAGAAGAAGT 493 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 574 GAGAAGAAGCAGAGGAGCTCTG-TAAAAAGGAGAGCAACTACATGGAAAGAAGAAGAAGT 632 Query 494 TGTTGTTGATGATGAAAAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC 553 ||||| || |||| ||||||||||||||||| |||||||| ||||||||| || |||||| Sbjct 633 TGTTGATGTTGATAAAAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC 692 Query 554 AACATCTCGAAGCAGGAGCAAGAA 577 ||||||||| |||||||||||||| Sbjct 693 AACATCTCGTAGCAGGAGCAAGAA 716 > Ahg920939 jgi|Araly1|920939|scaffold_102220.1 Length=444 Score = 204 bits (110), Expect = 4e-51 Identities = 133/144 (92%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 435 GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACATGGAAAGAAGAAGAAGTT 494 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 206 GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGTAACTACATGGAAAGAAGAAGAAGTT 265 Query 495 GTTGTTGATGATGAA-AAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC 553 |||| || |||| || ||||||||||||||| |||||||| ||||||||| || |||||| Sbjct 266 GTTGATGTTGAT-AACAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC 324 Query 554 AACATCTCGAAGCAGGAGCAAGAA 577 || |||||| |||||||||||||| Sbjct 325 AATATCTCGTAGCAGGAGCAAGAA 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111566327605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5