BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11950.1
Length=2955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471347 jgi|Araly1|471347|fgenesh2_kg.1__1301__AT1G11950.1 3999 0.0
Ahg907209 jgi|Araly1|907209|Al_scaffold_0002_290 1184 0.0
Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019 209 8e-53
Ahg920939 jgi|Araly1|920939|scaffold_102220.1 204 4e-51
> Ahg471347 jgi|Araly1|471347|fgenesh2_kg.1__1301__AT1G11950.1
Length=2701
Score = 3999 bits (2165), Expect = 0.0
Identities = 2543/2722 (93%), Gaps = 40/2722 (1%)
Strand=Plus/Plus
Query 179 AGTTGCTACTAACGGAGT-GATTCTCAAGCATAATGGTGTAAAGGATATTTCTTTAGAAA 237
|||| || |||| ||||| ||| ||||| ||||||||||||||||| ||| | ||||
Sbjct 12 AGTTTCTGCTAATGGAGTAAATT-GCAAGCGTAATGGTGTAAAGGATAGTTCACTGGAAA 70
Query 238 CTTGTTGGCCAGAGAAGAAGAAACCGGTTGAGGCAACGAGTCTTAGCAGTGGTTCATCAG 297
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 71 CTTGTTGGCCGGAGAAGAAGAAACCGGTTGAGGCAACGAGTCTTAGCAGCGGTTCATCAG 130
Query 298 ACATAGAAGAAGAGATTAGTGTGGAATGTCCTAAGCGAGTGGCTAATCAAAGACGGAAAC 357
| ||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||
Sbjct 131 ATATAGAAGAAGAGAGTAGTGTGGAATGTCCGAAACCAGTGGCTAATCAAAGACGGAAAC 190
Query 358 GGTCTAAAGCTGATGAGATTAAAACGAAATCTTCAAGAAAGAGGAAATGTGATGATGAGA 417
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 191 GCTCTAAAGCTGATGAGATTAAAGCGAAATCTTCAAGAAAGAGGAAATGTGATGATGAGA 250
Query 418 ACAAGTGTGAAGAGAATGAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACAT 477
| || |||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 251 AGAAATGTGAAGAAAAGGAGAAGAAGCAGAGGAGCTCTGTAAAAAAGAGAGCAACTACAT 310
Query 478 GGAAAGAAGAAGAAGTTGTTGTTGATGATGAAAAGAAATGCGAACAACAACTCCAACTAG 537
||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||
Sbjct 311 GGAAAGAAGAAGAAGTTGTCGATGATGATGAAAAGAAATGCGAACAAGAACTCCAAGTAG 370
Query 538 TTCCTTCCAGCAAGGCAACATCTCG-AAGCAGGAGCAAGAAATCAGTCAGTGTGGATACT 596
|||||| || ||||||||||||||| || |||||||||||| ||| ||||| |||| ||
Sbjct 371 TTCCTTTCATCAAGGCAACATCTCGTAA-CAGGAGCAAGAACGCAGACAGTGCGGATGCT 429
Query 597 TGGTTGGTT-AACAACGAGATTGATGTTAGCGCTTTGAGTTCGCGTTCTGAGTCTGAACT 655
||||| ||| | |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 430 TGGTTAGTTGGA-AACGAGATCGATGTTAGCGCTTCGAGTTCGCGTTCTGAGTCTGAACT 488
Query 656 TTCGGATTCTTATCTGAAAACCGAGTACTTTAATGACTGCAGAAGCATGACAAGGAGTTT 715
|||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 489 TTCGGATTCTCATCTGAAAACTGAGTATTTTAATGACTGCAGACGCATGACAAGGAGTTT 548
Query 716 AAAGGCAAATTTGGGAGAGCTTGCAATTTGCCATCAATGCTCTAAAGGGGAAAGAAGATA 775
||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 549 AAAGGCAGATTTGGGAGAGCTTGCGATTTGCCATCAATGCTCGAAAGGGGAAAGAAGATA 608
Query 776 TCTTTTCATTTGCACCTTTTGTGAAGTGAGGTTGTATTGTTTTCCATGCATAAAGAAATG 835
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 609 TCTTTTCATTTGCACCTTTTGTGAAGAGAGGTTGTATTGTTTTCCATGTATAAAGAAATG 668
Query 836 GTATCCCCATTTGTCCACGGATGATATCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTG 895
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 669 GTATCCCCATTTGTCCACGGATGATGTCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTG 728
Query 896 CAACTGCTGCACATGTTTGCACTCTAGTGGTTTAATCGAGACATCTAAGAGAAAGCTCGA 955
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 729 CAACTGCTCCACATGTTTGCACTCAAGTGGTTTAATCGAGACATCAAAGAGAAAGCTCGA 788
Query 956 TAAATACGAAAGATTTTATCATCTTCGCTTCTTGATTGTGGCGATGCTTCCTTTCCTGAA 1015
||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 789 TAAGTACGAAAGATTTTATCATCTTCGATACTTGATTGTGGCGATGCTTCCTTTCTTGAA 848
Query 1016 AAAGTTATGCAAAGCACAAGATCAAGAAATCGAAACCGAGGCTAAGGTTCAAGATTCAAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 849 AAAGTTATGCAAAGCACAAGATCAAGAAATCGAAACCGAGGCTAAGGTTCAAGGTTCAGT 908
Query 1076 GGCTTCTCAAGTTGATATATCCGAGAGTCTATGCTCAAATGAAGAGCGTGTCTTCTGTAA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GGCTTCTCAAGTTGATATATCCGAGAGTCTATGCTCAAATGAAGAGCGTGTCTTCTGTAA 968
Query 1136 CCACTGTGCAACATCAATTGTTGACTTGCATCGAAGCTGTCCAAAGTGTTCATAT-GAA- 1193
||| |||||||| |||||||| ||||||||||||||||||||||||||||| | | |||
Sbjct 969 CCATTGTGCAACCTCAATTGTGGACTTGCATCGAAGCTGTCCAAAGTGTTCCT-TCGAAC 1027
Query 1194 TTGTGTCTGAACTGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCTGACCGCCCGGAATGT 1253
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1028 TT-TGTCTGAACTGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCAGAACGCCCGGAATGT 1086
Query 1254 CAGCTACAATTCGAGTACAGAGGGACCCGGTATATACATGGCGAAGCTGCAGAACCGAGC 1313
||||||||||||||||| | ||||| |||||| |||||||||||| |||||||||||||
Sbjct 1087 CAGCTACAATTCGAGTATAAAGGGAGCCGGTACGTACATGGCGAAGATGCAGAACCGAGC 1146
Query 1314 TCTTCTTCTGTTTCCGAGGATGAAACTAAAACTCCATCCATCAAGTGGAATGCTGATGAA 1373
|||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 1147 TCTTCTTCTGTTTCTGAGGATGAAACTACAATTCCATCCATGAAGTGGAATGCTGATGAA 1206
Query 1374 AATGGAAGCATACGGTGTGCGCCAAAAGAGCTAGGAGGTTGCGGGGACTCTGTGCTGGAG 1433
||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 1207 AATGGAAGCATACCGTGTGCGCCAAAAGAGCTAGGCGGTTGCGGTGACTCTGTGTTGGAG 1266
Query 1434 CTTAAGCGAATCTTACCAGTGACTTGGATGTCAGATTTGGAGCAAAAGGCAGAAACATTC 1493
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1267 CTTAAGCGAATCCTACCCGTGACTTGGATTTCAGATTTGGAGCAAAAGGCAGAAACATTC 1326
Query 1494 TTAGCCTCTTATAGTATCAAACCGCCAATGTCATATTGTAGATGTTCTTCTGATAT-GAG 1552
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1327 TTAGCCTCTTATTGTATCAATCCGCCAATGTCATATTGTAGATGTTCTTCTGATATGGAG 1386
Query 1553 -T-AGTATGAAGAGGAAGGCAGCTTCGAGGGACGGATCTAGTGACAATTACCTTTATTCT 1610
| |||||||||||| |||||||||||||| ||| ||| |||||||||||||| || |||
Sbjct 1387 ATGAGTATGAAGAGGCAGGCAGCTTCGAGGAACGAATCCAGTGACAATTACCTCTACTCT 1446
Query 1611 CCTGATTCTTTGGATGTCCTGAAGCAAGAAGAACTTCTGCATTTCCAAGAGCATTGGTCC 1670
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1447 CCCGATTCTTTTGATGTCCTGAAGCAAGAAGAGCTTCTGCATTTCCAAGAGCATTGGTCC 1506
Query 1671 AAAGGTGAACCAGTGATTGTTCGAAATGCTCTTAACAACACAGCTGGTTTAAGCTGGGAG 1730
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1507 AAAGGTGAACCAGTGATTGTTCGAAACGCTCTTAACAACACAGCTGGTTTAAGCTGGGAG 1566
Query 1731 CCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTGATTCAGCAATTAGCTCTAATATG 1790
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1567 CCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTGATTCAGCAAGTAGCTCTACGATG 1626
Query 1791 TCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTGAAGATAAATACTCTATGT 1850
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1627 TCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTGAAGATCAATACTCGATGT 1686
Query 1851 TTCTTTGAAGGATATAGCAAAGGAAGAACATATGAAAACTTCTGGCCTGAGATGCTGAAG 1910
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1687 TTCTTTGAAGGATATAGCAAAGGAAGAAGATATGATAACTTCTGGCCTGAGATGCTGAAG 1746
Query 1911 CTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTTACCTCGTCACTGCGATGAG 1970
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1747 TTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTTACCTCGTCACTGTGATGAG 1806
Query 1971 TTCATTTCCGCATTACCATTTCAAGAATACAGCGATCCTAGATCAGGAATTCTCAACATT 2030
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1807 TTCATTTCCGCATTACCGTTTCAAGAATACAGCGATCCTAGATCCGGAATTCTCAACATT 1866
Query 2031 GCTACAAAACTTCCTGAAGGACTTCTTAAACCAGATCTTGGTCCAAAAACTTATGTTGCA 2090
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1867 GCTACTAAACTTCCTGAAGGACTTCTTAAACCAGATCTTGGTCCAAAAACCTACATTGCA 1926
Query 2091 TATGGGACTTCAGATGAGCTCGGTAGAGGAGATTCAGTCACTAAGCTTCACTGTGATATG 2150
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1927 TATGGGACTTCAGATGAGCTCGGTAGAGGCGATTCTGTGACTAAGCTTCACTGTGATATG 1986
Query 2151 TCAGATGCTGTTAATATTCTGATGCATACTGCTGAAGTAACACTAAGTGAGGAGCAAAGG 2210
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1987 TCGGATGCGGTTAATATTCTGATGCATACTGCTGAAGTAACACTAAGTGAGGAGCAAATG 2046
Query 2211 TCTGCAATTGCAGATTTGAAACAGAAACATAAGCAACAGAATGAGAAAGAGCTTCAGGAG 2270
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2047 TCTGCAATTGAAGATTTGAAACAGAAACATAAGCAACAGAATGAGAAAGAGCTTCAGGAG 2106
Query 2271 CAAAATGGTTTAGAGGAAGAAGAGGTTGTGAGTGATGAGATTGTGGTTTATGATGAAACA 2330
|||| | | || || || |||||| | || | | | |||| ||| |
Sbjct 2107 CAAA-T--T---GATGA-GA-----TTGTGA-T-AT-A--T-G------ATGA--AAA-A 2139
Query 2331 AGTGGTGCACTTTGGGACATCTTTAAAAGAGAAGATGTTCCTAAGCTTGAAGAGTATCTA 2390
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2140 GGTGGTGCACTTTGGGACATCTTTAGAAGAGAAGATGTTCCTAAGCTTGAAGAGTATCTA 2199
Query 2391 AGGAAGCATTGCATAGAATTCAGACATACTTATTGCTCTCGTGTTACAAAGGTGTATCAT 2450
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2200 AGGAAGCATTGCAAAGAATTCAGACATACTTTTTGCTCTCCTGTTACAAAGGTGTATCAT 2259
Query 2451 CCAATACATGATCAGTCATATTTCTTAACCGTGGAGCATAAAAGAAAACTCAAGGCAGAA 2510
|||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2260 CCAATACATGATCAATCATGTTTCTTAACCGTGGAGCATAAACGAAAACTCAAGGCAGAA 2319
Query 2511 TTTGGGATTGAGCCATGGACATTTGTGCAAAAGCTAGGAGAAGCAGTGTTTATTCCAGCA 2570
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2320 TTTGGGATTGAGCCATGGACATTTGTGCAAAAACTAGGAGAAGCAGTGTTTATTCCCGCG 2379
Query 2571 GGTTGTCCTCATCAAGTTCGGAATCTCAAGTCGTGCACAAAGGTAGCTGTTGATTTTGTT 2630
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2380 GGTTGTCCACATCAAGTTCGGAATCTCAAGTCTTGCACAAAGGTAGCTGTTGATTTTGTT 2439
Query 2631 TCCCCTGAAAACATCGATGAGTGTCTCCGTTTGACTGATGAGTTTCGACAACTCCCTAAG 2690
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2440 TCCCCAGAGAACATCGATGAGTGTCTCCGTTTGACTGATGAGTTTAGACAACTCCCTAAG 2499
Query 2691 AACCATAAAGCCAGAGAAGACAAACTTGAGATAAAAAAGATGGTGATCTATGCAGTTGAA 2750
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2500 AACCATAAGGCTAGAGAAGACAAACTTGAGATAAAAAAGATGGTGATCTATGCAGTGGAA 2559
Query 2751 CAAGCTCTGAAAGAAGTGGAGACATTATTGCTAGATCGCAGCTAAAAGCTCTATAGCTTT 2810
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2560 CAAGCTCTGAAAGAAGTGGAGACATTGTTGCTAGATCGCAGCTAAAAGCTCTATAGCTTT 2619
Query 2811 GTTGTTGTAGGATTAACAGCAGATTTTGTAGAATTGTTAAAGCCATGGCTATTGTAGTTG 2870
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2620 GTTGTTGTAGGATTGACAGCAGATTTTGTAGGATTGTTAAAGCCATGGCTATTGTAGTTG 2679
Query 2871 GCTTTTGCTGTGATATATGTAT 2892
|||||||||||||||||| |||
Sbjct 2680 GCTTTTGCTGTGATATATATAT 2701
> Ahg907209 jgi|Araly1|907209|Al_scaffold_0002_290
Length=2796
Score = 1184 bits (641), Expect = 0.0
Identities = 1604/2054 (78%), Gaps = 126/2054 (6%)
Strand=Plus/Plus
Query 739 CAATTTGCCATCAATGCTCT-AAAGGGGAAA-GA-AGATATCTTTTCATTTGCACCT-TT 794
||||||| ||||| |||| | ||||| |||| || | | | ||| ||||||||| |
Sbjct 650 CAATTTGTCATCAGTGCT-TGAAAGGAGAAAGGATA-ACA-CTTCTCATTTGCA-GTGAA 705
Query 795 TGTGAAGTGAGGTTGTATTGTTTTCCATGCATAAAGAAATGGTATCCCCATTTGTC-CAC 853
|||||| || | |||||||| || ||| |||| |||||||||||| ||| | || |
Sbjct 706 TGTGAACAGACGATGTATTGTCTTAAATGTATAAGGAAATGGTATCCACATCTATCTGA- 764
Query 854 GGATGATATCCTTGAAAAATGTCCCTTTTGCCGAGGAACTTGCAACTGCTGCACATGTTT 913
||||||| | || |||||||||| |||||||| || ||| || ||| | | ||| ||
Sbjct 765 GGATGATGTTGTTCAAAAATGTCCTTTTTGCCGCCAAAATTGTAATTGCAGTAAATGCTT 824
Query 914 GCACTCT-AGTGGTTTAATCGAGACATCTAAGA-GAAAGCTCGA-TAAATACGAAAGATT 970
||| | | | ||||||||||||||||| |||| | || ||| | || | ||||||
Sbjct 825 GCA-TTTGAACGGTTTAATCGAGACATCGAAGAGGGAA-CTC-ACGAATTGTGAAAGACG 881
Query 971 TTATCATCTTC-GCTTCTTGATTGTGGCGATGCTTCCTTTCCTGAAAAAGTTATGCAAAG 1029
| |||||| | | | |||| || |||||||||||| ||||| ||||||| ||||
Sbjct 882 TCGTCATCTCCAG-TACTTGGTTACATTGATGCTTCCTTTTCTGAATAAGTTATCCAAA- 939
Query 1030 CACAAG-ATCAAGAAATCGAAACCGAGGCTAAGGTTCAA-GATTCAATGGCTTCTC-AAG 1086
| || | ||||| || || ||||| ||||||||| |||| | || |||| | |||
Sbjct 940 TTCCAGAAGCAAGAGATTGAGTTTGAGGCAAAGGTTCAAGGATT-ACTGCCTTC-CGAAG 997
Query 1087 TTGATATATCCGAGAGTCTATGCTCA-AATGAAGAGCGTGTCTTCTGTAACCACTGTGCA 1145
|| | ||| | |||| || || | | ||| || ||||| | |||| | || ||||||
Sbjct 998 TTAAAATAACTGAGACAATAAACT-ACACTGATGAACGTGTATACTGTGATCATTGTGCA 1056
Query 1146 ACATCAATTGTTGACTTGCATCGAAGCTGTCCAAAGTGTTCATATGAATTGTGTCTGAAC 1205
|| ||||||| |||||||| |||||||| |||||||| || |||||| | ||| | ||
Sbjct 1057 ACTTCAATTGAGGACTTGCACCGAAGCTGCCCAAAGTGCTCTTATGAACTATGTTTAAAG 1116
Query 1206 TGTTGCCAAGAGATCCGTGGAGGTTGGCTTTCTGACCGCCC-GGAATGTCAGCTACAATT 1264
|| || |||||||| |||| ||| | ||||||||| ||||| | |||| || ||| |||
Sbjct 1117 TGCTGTCAAGAGATTCGTGAAGGATCGCTTTCTGAACGCCCTGAAATG-AAGTTAC-ATT 1174
Query 1265 CGA-G-T-ACAGAGGGA-CCCGGTATATACATGG---CGA-AGCTGCAGAACCGA-GCTC 1315
| | | | ||| ||| || ||||| || || || | | || ||||| | ||||
Sbjct 1175 --ATGTTGATAGA-GGATATCGATATATGCAGGGTTTAGATA-CCGCGGAACC-AGGCTC 1229
Query 1316 TTCTTCTGTTTCCG-AG--GATGAAACTAAAACTCCATCC-A-TC-AAGTGGAATG-C-T 1367
||||| ||| | || || ||| || ||| |||||| | | |||||| | | | |
Sbjct 1230 CTCTTCCACTTCTGAAGACGAAGAAGCT--AAC-CCATCCGACGCTAAGTGG-A-GCCTT 1284
Query 1368 GATGAAAATGGAAGCAT-ACGGTGTGCGCCA-AAAGAGCTAGGAGGTTGCGGGGACTCTG 1425
| ||| ||||||||||| || ||||| ||| ||| | ||||| ||||| || || | ||
Sbjct 1285 GGTGATAATGGAAGCATCAC-TTGTGCACCAGAAA-ATCTAGGTGGTTGTGGTGATTGTG 1342
Query 1426 TGCTGGAGCTTAAGCGAATCTTACCAGTGACTTGGATGTCAGATTTGGAGCA-AAAGGCA 1484
|||| ||||||||||| ||| ||||| |||| ||||||||||| || ||||| ||| |||
Sbjct 1343 TGCTAGAGCTTAAGCGGATCCTACCACTGACGTGGATGTCAGACTTAGAGCACAAA-GCA 1401
Query 1485 GAAACATTCTTAG-CCTCTTATAGTATCAAACCGCCAATG-TCATATTGTAGATGTTCTT 1542
|| || ||||| | | || || | ||| | || |||| | | | ||||| |||||||
Sbjct 1402 GAGACTTTCTT-GTCATCATACAATATTAGCCCTAGAATGTTGA-ACTGTAGGTGTTCTT 1459
Query 1543 C-TGATATGA--GTAGTATGA-AGAGGAAGGCAGCTTCGAGGGAC-GGATCTAGTGACAA 1597
| | | | || | || |||| | ||||| |||||||||| |||| ||| ||||||||
Sbjct 1460 CTTTAGA-GACCG-AG-ATGACA-AGGAAAGCAGCTTCGA-GGACAAAATCGAGTGACAA 1514
Query 1598 TTACCTTTAT-TCTCCTGATTCT-TTGGATGTCCTGAAGCAAGAAGAACTTCTGCATTTC 1655
||||||| | | |||||| ||| |||| |||| ||||| |||||| ||||| |||||
Sbjct 1515 CTACCTTT-TCTGTCCTGAATCTCTTGG-TGTCTTGAAGGAAGAAGGGCTTCTTCATTTT 1572
Query 1656 CAAGAGCATTGGTCCAAA-GGTGAACCAGTGATTGTTC-GAAATGCTCTTAACAACACAG 1713
|||||||||||| |||| || |||||||| || | || | || || ||| | ||||||
Sbjct 1573 CAAGAGCATTGG-GCAAACGGCGAACCAGTAATCG-TCAGGAACGCCCTTGATAACACAC 1630
Query 1714 CTGGTTTAAGCTGGGAGCCAATGGTGATGTGGCGGGCTTTATGTGAGAATGTTG-ATTCA 1772
||||||||||||||||||| ||||| ||||||||||||||||| || |||| || |||||
Sbjct 1631 CTGGTTTAAGCTGGGAGCCGATGGTTATGTGGCGGGCTTTATGCGAAAATG-TGAATTCA 1689
Query 1773 GCAATTAGCTCTAATATGTCTGATGTCAAAGCTATCGATTGTTTAGCTAATTGTGAGGTG 1832
|| |||||| | ||||| | |||||||| || ||||| ||||||||||||||||||
Sbjct 1690 ACAGCAAGCTCTCAGATGTCCCAAGTCAAAGCAATTGATTGCTTAGCTAATTGTGAGGTG 1749
Query 1833 AAGATAAATACTCTAT-GTTTCTTTGAAGGATATAGCAAAGGAAGAACATATGAAAACTT 1891
|||| ||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1750 GAGATCAATACTC-GTCATTTCTTTGAAGGTTATAGCAAAGGAAGAACATATGAAAACTT 1808
Query 1892 CTGGCCTGAGATGCTGAAGCTGAAGGATTGGCCTCCTTCAGACAAGTTTGAAAACCTTTT 1951
||||||||||||| ||||||||||||| ||||||||||| || ||||||||| | |||||
Sbjct 1809 CTGGCCTGAGATGTTGAAGCTGAAGGACTGGCCTCCTTCTGATAAGTTTGAAGATCTTTT 1868
Query 1952 ACCTCGTCACTGCGATGAGTTCATTTCCGCATTACCATTTC-AAGAATACAGCGATCCTA 2010
||||||||| || ||||||||||| ||||| ||||| |||| ||||||| ||| ||||||
Sbjct 1869 ACCTCGTCATTGTGATGAGTTCATATCCGCGTTACC-TTTCCAAGAATATAGCAATCCTA 1927
Query 2011 GATCAGGAATTCTCAACATTGCTACAAAACTTCCTGAAGGACTTCTTAAACCAGATCTTG 2070
|| | |||||||| |||||||| ||||| |||||||||||| || | ||||||||| |||
Sbjct 1928 GAACCGGAATTCTTAACATTGCAACAAAGCTTCCTGAAGGATTTATCAAACCAGAT-TTG 1986
Query 2071 G-TCCAAAAACTTATGTTGCATATGGGACTTC-AGATGAGCTCGGTAGAGGAGATTCAGT 2128
| ||| |||||||| |||| ||||||| ||| ||||||||| |||||||| ||||| ||
Sbjct 1987 GGTCCCAAAACTTACATTGCTTATGGGA-TTCCAGATGAGCTTGGTAGAGGCGATTCTGT 2045
Query 2129 CACTAAGCTTCACTGTGATATGTCAGATGCTGTTAATATTCTGATGCATACTGCTGAAGT 2188
||||||||||| || ||||||||||| || || |||||||||| |||||| || |||||
Sbjct 2046 GACTAAGCTTCATTGCGATATGTCAGACGCGGTGAATATTCTGACGCATACGGCCGAAGT 2105
Query 2189 AACACTAAGTGAGGAGCAAAGGTCTGCAATTGCAG-ATTTGAAACAGAAACATAAGCAAC 2247
||| |||||| | || |||| || ||| | || | | |||||||||||| |||||||
Sbjct 2106 AACCCTAAGTCAAGAACAAATATCAGCAGTCAAAGCACT-GAAACAGAAACACAAGCAAC 2164
Query 2248 AGAATGA-GAAAGAGCTTCAGGAGCAA--AAT---G--GTTTAGAGGAAGAAGAGGTTGT 2299
|||| | | || ||| |||| ||| | | |||||||||||| |||
Sbjct 2165 AGAAC-ATGTTTGATAAACAG-AGCACTGAATTCTGCAGCAAAGAGGAAGAAGAA-TTGA 2221
Query 2300 G-AGTG--ATGAGATTGTG-GTT-T-A---TGATGAAACAAGTGGTGCACTTTGGGACAT 2350
| || | |||||| || | | | ||| ||||| | |||| |||||||||||
Sbjct 2222 ACA-TGCCA-GAGATTTTGAGCAATGAAAATGACGAAACGGGCAGTGCTCTTTGGGACAT 2279
Query 2351 CTTTAAAAGAGAAGATGTTCCTAAGCTT-GAAGAGTATCTAAGGAAGCATTGC-ATAGAA 2408
|||| ||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||
Sbjct 2280 ATTTAGGAGAGATGATGTTCCTAAA-TTAGAAAAGTATCTAAGAAAGCATTGCCA-AGAA 2337
Query 2409 TTCAGACATACTTATTGCTCTCGTGTTACAAAGGTGTATCATCCAATACATGATCAGTCA 2468
|| |||||||||||||| | || ||||||||||| | |||||| |||||||| || ||
Sbjct 2338 TTTAGACATACTTATTGTTGTCCAGTTACAAAGGTTTGTCATCCGATACATGACCAAACA 2397
Query 2469 TATT-TCTTAACCGTGGAGCATAAAAGAAAACTCAAGGCAGAATTTGGGATTGAGCCATG 2527
| | | |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2398 TGCTAT-TTAACCTTGGAGCACAAAAGAAAACTCAAGGCAGAATTTGGGATCGAGCCATG 2456
Query 2528 GACATTTGTGCAAAAGCTAGGAGAAGCAGTGTTTATTCCAGCAGGTTGTCCTCATCAAGT 2587
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 2457 GACATTTGTGCAAAAGCTAGGTGAAGCAGTGTTTATTCCTGCGGGTTGTCCTCATCAAGT 2516
Query 2588 TCGGAATCTCAAGTCGTGCACAAAGGTAGCTGTTGATTTTGTTTCCCCTGAAAACATCGA 2647
||||||||| |||||||||||||| || || ||||| ||||| || || || |||||| |
Sbjct 2517 TCGGAATCTAAAGTCGTGCACAAAAGTGGCAGTTGACTTTGTGTCACCAGAGAACATCCA 2576
Query 2648 TGAGTGTCTCCGTTTGACTGATGAGTTTCGACAACT-CCCTAAGAACCATAAAGCCAGAG 2706
||||||||| ||| |||| || |||||||| ||||| ||| |||||||| || |||||||
Sbjct 2577 TGAGTGTCTGCGTCTGACCGAAGAGTTTCGCCAACTTCCC-AAGAACCACAAGGCCAGAG 2635
Query 2707 AAGACAAACTTGAG 2720
| ||||||||||||
Sbjct 2636 AGGACAAACTTGAG 2649
> Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019
Length=792
Score = 209 bits (113), Expect = 8e-53
Identities = 134/144 (93%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 435 GAGAAGAAGCAGAGGAGCTCTGTTAAAAA-GAGAGCAACTACATGGAAAGAAGAAGAAGT 493
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 574 GAGAAGAAGCAGAGGAGCTCTG-TAAAAAGGAGAGCAACTACATGGAAAGAAGAAGAAGT 632
Query 494 TGTTGTTGATGATGAAAAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC 553
||||| || |||| ||||||||||||||||| |||||||| ||||||||| || ||||||
Sbjct 633 TGTTGATGTTGATAAAAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC 692
Query 554 AACATCTCGAAGCAGGAGCAAGAA 577
||||||||| ||||||||||||||
Sbjct 693 AACATCTCGTAGCAGGAGCAAGAA 716
> Ahg920939 jgi|Araly1|920939|scaffold_102220.1
Length=444
Score = 204 bits (110), Expect = 4e-51
Identities = 133/144 (92%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 435 GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACATGGAAAGAAGAAGAAGTT 494
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 206 GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGTAACTACATGGAAAGAAGAAGAAGTT 265
Query 495 GTTGTTGATGATGAA-AAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC 553
|||| || |||| || ||||||||||||||| |||||||| ||||||||| || ||||||
Sbjct 266 GTTGATGTTGAT-AACAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC 324
Query 554 AACATCTCGAAGCAGGAGCAAGAA 577
|| |||||| ||||||||||||||
Sbjct 325 AATATCTCGTAGCAGGAGCAAGAA 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111566327605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5