BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11960.1
Length=2660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312226 jgi|Araly1|312226|fgenesh1_pm.C_scaffold_1001006 3603 0.0
Ahg338150 jgi|Araly1|338150|fgenesh1_pg.C_scaffold_2000249 1862 0.0
Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075 503 3e-141
> Ahg312226 jgi|Araly1|312226|fgenesh1_pm.C_scaffold_1001006
Length=2322
Score = 3603 bits (1951), Expect = 0.0
Identities = 2209/2331 (95%), Gaps = 28/2331 (1%)
Strand=Plus/Plus
Query 185 ATGGCAACACTAGGAGATATTGGAGTAGCAGCAGCAATCAACATACTCACTGCAATCATC 244
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCAACACTAGAAGATATTGGAGTAGCAGCAACAATCAACATACTCACTGCAATCATC 60
Query 245 TTCCTTTTGGCATTTGCAATCTTGAGGATTCAACCATTCAACGATAGGGTTTATTTCCCT 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCTTCTGGCATTTGCAATCTTGAGGATTCAACCATTCAACGATAGGGTTTATTTCCCT 120
Query 305 AAATGGTATCTCAAAGGTATAAGAAGCAGCCCTTTGCATTCAGGTGCTCTTGTCAGCAAG 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGGTATCTTAAAGGTATAAGAAGCAGCCCTTTGCATTCAGGTGCTCTTGTCAGCAAG 180
Query 365 TTTGTCAATGTTAACTTAGGCTCATACCTCCGGTTCTTGAACTGGATGCCCGCGGCTCTA 424
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 TTTGTCAATGTCAACTTAGGCTCTTACCTCCGGTTCTTGAACTGGATGCCTGCGGCTCTA 240
Query 425 AAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCTGCTGTCTACTTGAGG 484
|| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AACATGCCCGAGCCCGAGCTTATTGACCATGCTGGATTGGATTCTGCTGTCTACTTGAGG 300
Query 485 ATTTACTTGATAGGGCTTAAGATCTTTGTACCGATAGCGTTACTTGCTTGGTCGATTCTT 544
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 301 ATTTACTTGATAGGGCTTAAGATCTTTGTCCCGATAGCTTTACTTGCGTGGTCGATTCTT 360
Query 545 GTACCTGTCAATTGGACTAGTCATGGTCTGCAACTAGCTAAGCTTCGTAATGTGACATCT 604
||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||
Sbjct 361 GTACCTGTCAATTGGACTAGTGATGGACTGCAACTAGCAAAGCTTCGTAATGTAACATCT 420
Query 605 AGTGATATTGATAAGTTATCCATCTCGAATATCGAAAATGGAT----CA----G-AC--- 652
||||| |||||||||||||| ||||| ||||||||| ||||| || | ||
Sbjct 421 AGTGACATTGATAAGTTATCGATCTCAAATATCGAACGTGGATCAGACAGTTTGTACTTT 480
Query 653 ---AGGTTTTGGACTCACCTTGTGATGGCTTACGCATTCACATTCTGGACTTGCTATGTT 709
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TTAAGGTTTTGGACTCACCTTGTGATGGCTTATGCATTCACATTCTGGACTTGCTATGTT 540
Query 710 CTTATGAAAGAGTATGAGAAAGTAGCTGCTATGCGTTTGGCATTTCTCCAGAACGAGCAA 769
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAATGAAAGAGTATGAGAAAGTAGCTGCTATGCGTTTGGCATTTCTCCAGAACGAGCAA 600
Query 770 CGGCGCCCTGATCAGTTCACGGTTTTGGTTAGGAACGTACCAGCGGACCCAGATGAGTCC 829
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 601 CGGCGCCCTGATCAGTTCACGGTTTTGGTTAGGAACGTACCAGCCGACCCAGACGAGTCC 660
Query 830 ATTAGTGACAGTGTGGAACATTTCTTTCTAGTTAACCATCCGGACCATTATCTTACGCAT 889
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ATTAGTGAGAGTGTGGAACATTTCTTCCTAGTTAACCATCCGGACCATTATCTTACGCAT 720
Query 890 CAGGTTGTGTACAATGCAAACGATTTGGCAGCATTAGTAGAGCAGAAGAAGAGCACACAG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGGTTGTGTACAATGCAAACGATTTGGCAGCATTAGTAGAGCAGAAGAAGAGCACACAG 780
Query 950 AACTGGCTTGACTATTACCAATTGAAGTATACAAGGAACCAGGAACATAAGCCGAGGATA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 AACTGGCTTGACTATTACCAATTGAAGTATACAAGGAACCAGGAACATAAGCCAAGGATA 840
Query 1010 AAGACGGGTTTTCTCGGGCTATGGGGAAAGAAAGTTGACGCAATCGATCATTATATAGCT 1069
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 AAGACGGGTTTTCTCGGGCTATGGGGACAGAAAGTTGACGCAATCGATCATTATATAGCT 900
Query 1070 GAAATCGAGAAATTAAACGAGCAAATAATGGAGGAGAGGAAAAAAGTGAAGAAAGATGAT 1129
|||||||||||||||||||||| | | |||||||||||||| ||||||||||||
Sbjct 901 GAAATCGAGAAATTAAACGAGC-----A---A-GAGAGGAAAAAAGTAAAGAAAGATGAT 951
Query 1130 ACAAGTGTAATGCCAGCCGCTTTTGTCTCGTTTAAAACACGGTGGGGTGCTGCGGTTAGT 1189
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 952 ACAAGTGTAATGCCAGCAGCTTTTGTCTCGTTTAAAACACGGTGGGGTGCTGCTGTTTGT 1011
Query 1190 GCACAGACTCAACAGTCGAGTGATCCGACTGAATGGTTAACTGAATGGGCTCCCGAGGCA 1249
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1012 GCACAGACTCAACAGTCGAGTGATCCAACCGAGTGGTTAACTGAATGGGCTCCCGAGGCA 1071
Query 1250 CGAGAAGTGTTTTGGTCGAACCTTGCAATACCTTATGTCTCTTTAACAGTAAGAAGACTT 1309
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1072 CGGGAAGTGTTTTGGTCGAACCTCGCAATACCTTATGTCTCTTTAACAGTAAGAAGACTT 1131
Query 1310 ATAATGCACATTGCATTCTTCTTCCTCACTTTCTTCTTCATGATTCCAATAGCCTTTGTT 1369
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1132 ATAATGCATATTGCATTCTTCTTCCTCACCTTCTTCTTCATGATTCCAATAGCCTTTGTT 1191
Query 1370 CAATCCCTTGCAAGCATCGAAGGCATTGAGAAAAATGCTCCTTTCCTGAAATCCATCATC 1429
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1192 CAAACCCTTGCAAGCATCGAAGGCATTGAGAAATCCGCTCCTTTCCTTAAATCCATCATC 1251
Query 1430 GAGAACG-ATCTT-TTCAAATCGGTTATCCAAGGTTTTCTTCCGGGTATCGTGTTAAAGC 1487
||||| | | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GAGAA-GAAGCTTGTT-AAATCGGTTATCCAAGGTTTTCTTCCGGGTATCGTGTTAAAGC 1309
Query 1488 TCTTTCTAATATTTCTGCCAAGCATTTTGATGGTAATGTCGAAGTTCGAAGGGTTTGTAT 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCTTTCTAATATTTCTGCCAAGCATTTTGATGGTAATGTCGAAGTTCGAAGGGTTTGTAT 1369
Query 1548 CGTTATCATCGTTAGAGAGAAGAGCGGCTTTTCGATATTATATCTTTAATCTCATCAATG 1607
|||||||||| |||||||||||||| |||| |||||||||||||||||| ||| ||||||
Sbjct 1370 CGTTATCATCATTAGAGAGAAGAGCAGCTTCTCGATATTATATCTTTAACCTCGTCAATG 1429
Query 1608 TCTTCCTCGGAAGCGTAATCACCGGCTCTGCATTTGAACAGCTTGATTCTTTCCTAAAAC 1667
|||||||||||||| ||||| | |||||||||||||||||||| || |||||||| ||||
Sbjct 1430 TCTTCCTCGGAAGCATAATCGCGGGCTCTGCATTTGAACAGCTCGAGTCTTTCCTCAAAC 1489
Query 1668 AATCCGCAAAGGAGATTCCTAAGACGGTTGGGGTAGCGATACCGATAAAAGCAACGTTTT 1727
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1490 AATCTGCAAAGGAGATTCCTAAGACGGTTGGAGTAGCGATACCGATAAAAGCAACGTTTT 1549
Query 1728 TTATCACATATATAATGGTGGACGGTTGGGCTGGTATTGCAGGGGAGATTCTGAGGCTGA 1787
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1550 TTATCACATATATAATGGTGGACGGTTGGGCGGGTATTGCAGGAGAGATTCTGAGGCTGA 1609
Query 1788 AACCTCTTATCTTTTTCCATATAAAGAACTCCTTATTGGTGAAAACCGAAAAGGATAGAG 1847
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1610 AACCTCTTATCTTTTTCCATATAAAGAACTTCTTATTGGTGAAAACCGAAAAGGATAGGG 1669
Query 1848 AAGAAGCAATGAACCCGGGACAGATCAATTATCATGCGACAGAGCCTCGGATTCAACTCT 1907
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1670 AAGAAGCAATGAACCCGGGACAGATCAATTACCATGCGACAGAGCCTCGGATTCAACTCT 1729
Query 1908 ACTTCCTCCTCGGTCTTGTCTACGCTCCTGTGACTCCAGTTCTACTCCCTTTCATTATCA 1967
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1730 ACTTCCTCCTCGGTCTTGTCTACGCCCCTGTGACTCCAGTTCTACTCCCTTTCATTATAA 1789
Query 1968 TCTTCTTCGCATTGGCTTACCTTGTCTTTCGTCATCAGATCATAAATGTGTATAATCAGG 2027
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TCTTCTTTGCATTGGCTTACCTTGTCTTTCGTCATCAGATCATAAATGTGTATAATCAGG 1849
Query 2028 AATATGAAAGCGCGGCTAGGTTCTGGCCAGATGTTCATGGTCGTATAATATCAGCATTGA 2087
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1850 AATACGAAAGCGCGGCTAGGTTCTGGCCAGATGTTCATGGACGTATAATATCAGCATTGA 1909
Query 2088 TCATCGCACAAATCCTTTTGATGGGACTATTAAGCACTAAGGGAGCTGCTCAGTCCACGC 2147
||||| | ||||||||||||||||||||| | |||||||||||||| ||||| |||||||
Sbjct 1910 TCATCTCGCAAATCCTTTTGATGGGACTACTGAGCACTAAGGGAGCAGCTCAATCCACGC 1969
Query 2148 CTTTCCTACTCTTCTTACCGATCATAACCTTTTTCTTCCACCGGTACTGCAAAGGCCGGT 2207
||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1970 CTTTCCTCCTCGTCTTACCGATCCTAACCTTTTTCTTCCACCGGTTCTGCAAAGGCCGGT 2029
Query 2208 ATGAACCAGCATTCCTCCGTCACCCCTTGAAGGAAGCTATGGTCAAAGATACATTGGAAC 2267
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2030 ATGAACCAGCATTCCTCCGTCACCCCTTGAAGGAAGCTATGGTTAAAGATACATTGGAAC 2089
Query 2268 GAGCAAGAGAACCCAATTTTAATCTGAAACCGTATCTTCAAAAAGCATACATTCATCCGG 2327
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2090 GAGCAAGAGAACCCAACTTTAATCTGAAACCGTATCTTCAGAAAGCATATATTCATCCGG 2149
Query 2328 TTTTCAAAGACAACGACTATGAAGATAGCCGGTTTGATGAAATATCCGGTTATTGCATCG 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 TTTTCAAAGACAACGACTATGAAGATAGCCGGTTTGATGAAATATCCGGTTATTGCATCG 2209
Query 2388 AAGATTCGGATGAAGAGTGTGTTACTGTACCGACCAAACGTCAGTCCCGGATAAATACGC 2447
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 2210 AAGATTCGGATGATGAGTGTGTTACTGTGCCGACTAAACGTCAGTCCCGGATAAATACAC 2269
Query 2448 CTGCTGTTAGCCATGCAAGCCGCGGTTCTTCGCGTTCACCACCCTCAAAGT 2498
| || ||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 2270 CGGCGGTTAGCCATGCTAGCCGCGGTTCTTCGCGTTCACCTCCGTCAAAGT 2320
> Ahg338150 jgi|Araly1|338150|fgenesh1_pg.C_scaffold_2000249
Length=2337
Score = 1862 bits (1008), Expect = 0.0
Identities = 1813/2200 (82%), Gaps = 62/2200 (3%)
Strand=Plus/Plus
Query 185 ATGGCAACACTAGGAGATATTGGAGTAGCAGCAGCAATCAACATACTCACTGCAATCATC 244
||||| ||| ||| ||||||||||||||||||||| || || || || | ||| | ||
Sbjct 1 ATGGCGACATTAGCAGATATTGGAGTAGCAGCAGCGATTAATATTCTAAGTGCTTTGATA 60
Query 245 TTCCTTTTGGC-ATTTGCAATCTTGAGGATTCAACCATTCAACGATAGGGTTTATTTCCC 303
|| || || || |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 61 TTTCTATT-GCTATTTGCAATCTTGAGGATCCAACCATTCAATGATAGGGTTTATTTCCC 119
Query 304 TAAATGGTATCTCAAAGGTATAAGAAGCAGCCCTTTGCATTCAGGTGCTCTT-GTCAGCA 362
||||||||| || |||||| | ||||||||||| || |||| |||||| || || ||||
Sbjct 120 TAAATGGTACCTAAAAGGTGTTAGAAGCAGCCCGGTGAATTCGGGTGCT-TTCGTGAGCA 178
Query 363 AGTTTGTCAATGTT-AACTTAGGCTCATACCTCCGGTTCTTGAACTGGATGCCCGCGGCT 421
|| || | ||| || |||| | |||||| | ||||| || || ||||||||||| |||
Sbjct 179 AGATTATGAAT-TTGGACTTTCGATCATACGTTCGGTTTTTAAATTGGATGCCCGCCGCT 237
Query 422 CTAAAGATGCCTGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCTGCTGTCTACTTG 481
| |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 238 TTGAAGATGCCAGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGCTGTTTACTTG 297
Query 482 AGGATTTACTTGATAGGGCTTAAGATCTTTGTACCGATAGCGTTACTTGCTTGGTCGATT 541
|||||||||||||||||||||||||||||||| ||||| || |||||| | ||||||||
Sbjct 298 AGGATTTACTTGATAGGGCTTAAGATCTTTGTCCCGATCGCATTACTTTCATGGTCGATA 357
Query 542 CTTGTACCTGTCAATTGGACTAGTCATGG-TCTGCAACTAGCTAAGCTTCGTAATGTGAC 600
|| ||||||||||||||||| ||| |||| | |||| ||||| || ||||||||||||||
Sbjct 358 CTAGTACCTGTCAATTGGACCAGTGATGGAT-TGCAGCTAGCAAAACTTCGTAATGTGAC 416
Query 601 ATCTAGTGATATTGATAAG-TTATCCATCTCGAATATCGAAAATGGATCAGACAGGTTTT 659
||| ||| |||| |||||| || || || || ||| ||||| |||||||||||||||||
Sbjct 417 ATCAAGTAATATCGATAAGCTT-TCGATTTCAAATGTCGAACGTGGATCAGACAGGTTTT 475
Query 660 GGACTCACCTTGTGATGGCTTACGCATTCACATTCTGGACTTGCTATGTTCTTATGAAAG 719
|| | || |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
Sbjct 476 GGGCACATCTTGTGATGGCTTATGCATTCACATTTTGGACTTGCTATGTTCTAATGAAGG 535
Query 720 AGTATGAGAAAGTAGCTGCTATGCGTTTGGCATTTCTCCAGAAC-GAGCAA-CGGCGCCC 777
| ||||||||| | ||||| ||||| || | |||||||| | | ||| || || ||| |
Sbjct 536 AATATGAGAAAATTGCTGCAATGCGGTTATCTTTTCTCCA-ATCCGAG-AAGCGACGCGC 593
Query 778 TGATCAGTTCACGGTTTTGGTTAGGAACGTACCAGCGGACCCAGATGAGTCCATTAGTGA 837
|||||| ||||| ||| ||||||||||||||||| ||||| |||| ||||| ||||| ||
Sbjct 594 TGATCAATTCACTGTTCTGGTTAGGAACGTACCACCGGACTCAGACGAGTCAATTAGGGA 653
Query 838 CAGTGTGGAACATTTCTTTCTAGTTAACCATCCGGACCATTATCTTACGCATCAGGTTGT 897
| ||| | ||||||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct 654 AAACGTGCAGCATTTCTTTCTTGTTAACCACCCGGACCATTATCTTACACATCAGGTGGT 713
Query 898 GTACAATGCAAACGATTTGGC-AGCATTAGTAGA-GCAGAAGAAGAGCACACAGAACTGG 955
|||||||||||| || ||||| | | | ||||| | ||||||||| | ||||| |||
Sbjct 714 GTACAATGCAAATGAATTGGCTAA-ACTGGTAGAAG-AGAAGAAGAAAATGCAGAATTGG 771
Query 956 CTT-GACTATTACCAATTGAAGTATACAAGGAACCAGGAACATAAG-CCGA-GGATAAAG 1012
|| || || ||||| ||||||||| |||| ||| ||||||| ||| || | || |||||
Sbjct 772 -TTAGATTACTACCATTTGAAGTATTCAAGAAACAAGGAACA-AAGGCC-ACGGGTAAAG 828
Query 1013 ACGGGTTTTCTCGGGCTATGGGGAAAGAAAGTTGACGCAATCGATCATTATATAGCTGAA 1072
||| |||||||||||||||||||||||||| || ||||| |||||||| | ||||||
Sbjct 829 TTGGGATTTCTCGGGCTATGGGGAAAGAAAGTAGATGCAATGGATCATTACACAGCTGAG 888
Query 1073 ATCGAGAAATTAAACGAGCAAATAATGGAGGAGAGGAAAA-AAGTGAAGAAAGATGATAC 1131
||||||||| ||| ||||||||||||||| || ||||| | || | ||||||||||| |
Sbjct 889 ATCGAGAAACTAAGCGAGCAAATAATGGAAGAAAGGAAGAGAA-TAAAGAAAGATGACAA 947
Query 1132 AAGTGTAATGCCAGCCGCTTTTGTCTCGTTTAAAACACGGTGGGGTGCTGCGGT-TAGTG 1190
||||||||||||||| ||||| || || |||||||| || ||||| ||||| || | | |
Sbjct 948 AAGTGTAATGCCAGCAGCTTTCGTGTCTTTTAAAACGCGTTGGGGCGCTGCAGTCT-GCG 1006
Query 1191 CACAGACTCAACAGTCGAGTGA-TCCGACTGAATGGTTAACTGAATGGGCTCCCGAGGCA 1249
||||||| |||||| ||| || ||| || ||||||||||| ||||||||||||||||||
Sbjct 1007 CACAGACACAACAGACGAA-GAATCCAACGGAATGGTTAACCGAATGGGCTCCCGAGGCA 1065
Query 1250 CGAGAAGTGTTTTGGTCGAACCTTGCAATACCTTATGTC-TCTTTAACAGTAAGAAGACT 1308
||||| ||| ||| || || ||||| ||||| | | ||| | || |||| ||| |
Sbjct 1066 AGAGAAATGTACTGGGAAAATCTCGCAATGCCTTACG-CATCTCTCACTTTAAGGAGATT 1124
Query 1309 TATAATGCACATTGCATTCTTCTTCCTCACTTTCTTCTTCATGATTCCAATAGCCTTTGT 1368
| ||||||||||||| |||||||||||||| ||||| ||||| || ||||| || |||||
Sbjct 1125 TGTAATGCACATTGCCTTCTTCTTCCTCACATTCTTTTTCATCATCCCAATCGCATTTGT 1184
Query 1369 TCAATCCCTT-GCAAGCATCGAAGGCATTGAGAAAAATGCTCCTTTCCTGAAATCC-ATC 1426
|||||| || || || || ||||| || ||||| ||||| ||||| | ||| ||
Sbjct 1185 GCAATCC-TTAGCGAGTATTGAAGGTATCCAGAAATCCGCTCCGTTCCTCAG-TCCCATT 1242
Query 1427 ATCGAGAACGATCTTT-TCAAATCGGTT-ATCCAAGGTTTTCTTCCGGGTATCGTGTTAA 1484
|||| || || ||| | ||||| || ||||||||||||||||| ||||| || || |
Sbjct 1243 GTCGAAAA-GAAGTTTATGAAATCA-TTGATCCAAGGTTTTCTTCCCGGTATTGTTTTGA 1300
Query 1485 AGCTCTTTCTAATATTTCTGCCAAGCA-TTTTGATGGTAATGTCGAAGTTCGAAGGGTTT 1543
|||||||| | |||||||| |||| || |||||||| | |||||||| ||||||||||||
Sbjct 1301 AGCTCTTTTTGATATTTCTACCAA-CAATTTTGATGATCATGTCGAAATTCGAAGGGTTT 1359
Query 1544 GTATCGTTATCATCGTTAGAGAGAAGAGCGGCTTTTCGATATTATATCTTT-AATCTCAT 1602
| || |||||||||||||||||||||||||||||||||| ||||| ||| || || |
Sbjct 1360 ATTTCAATATCATCGTTAGAGAGAAGAGCGGCTTTTCGATACTATAT-TTTCAACCTTGT 1418
Query 1603 CAATGTCTTCCTCGGAAGCGTAATCACCGGCTCTGCATTTGAACAGCTTGATTCTTTCCT 1662
||||| |||||||| ||| ||||||| || ||||||||||||||||| |||||||| ||
Sbjct 1419 GAATGTTTTCCTCGGTAGCATAATCACTGGATCTGCATTTGAACAGCTCGATTCTTTTCT 1478
Query 1663 AAAACAATCCGCAAAGGAGATTCCTAAGACGGTTGGGGTAGCGATACCGATAAAAGCAAC 1722
|||||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||
Sbjct 1479 TAAACAATCCGCAAACGACATTCCGCGGACAGTTGGAGTAGCGATACCGATAAAAGCAAC 1538
Query 1723 GTTTTTTATCACATATATAATGGTGGACGGTTGGGCTGGTATTGCAGGGGAGATTCTGAG 1782
|| ||||| |||||||||||||| ||||||||||| ||| | || || || ||| | ||
Sbjct 1539 CTTCTTTATAACATATATAATGGTAGACGGTTGGGCGGGTGTGGCCGGAGAAATTTTTAG 1598
Query 1783 GCTGAAACCTCTTA-TCTTTTTCCATATAAAGAACTCCTTATTGGTGAAAACCGAAAAGG 1841
||||||||| ||| || |||||||| ||||||||| ||| || |||||||| |||||||
Sbjct 1599 GCTGAAACCA-TTAGTCATTTTCCATTTAAAGAACTTCTTCTTTGTGAAAACTGAAAAGG 1657
Query 1842 ATAGAGAAGAAGCAATGAACCCGGGACAGATCAATTATC-ATGCGACAGAGCCTCGGATT 1900
| ||||||||||| ||| | |||||||||||| ||| || | || |||||||||||||||
Sbjct 1658 ACAGAGAAGAAGCTATGGATCCGGGACAGATCGATT-TCTACGCTACAGAGCCTCGGATT 1716
Query 1901 CAACTCTACTTCCTCCTCGGTCTTGTCTACGCTCCTGTGACTCCAGTTCTACTCCCTTTC 1960
||||| || |||||||| || |||||||||||||| || || || |||||||| ||||||
Sbjct 1717 CAACTATATTTCCTCCTTGGCCTTGTCTACGCTCCGGTCACGCCTGTTCTACTTCCTTTC 1776
Query 1961 ATTATCATCTTCTTCGCATTGGCTTACCTTGTCTTTCGTCATCAGATCATAAATGTGTAT 2020
|| ||| ||||||||| || || ||||| ||||| |||||||||||||||||||||||
Sbjct 1777 ATCATCTTCTTCTTCGGTTTCGCCTACCTCGTCTTCCGTCATCAGATCATAAATGTGTAC 1836
Query 2021 AATCAGGAA-TATGAAAGCGCGGCTAGG-TTCTGGCCAGATGTTCATGGTCGTATAATAT 2078
||||| || ||||| ||||||||| | |||||||| || |||||||| ||||||||||
Sbjct 1837 GATCAG-AAGTATGAGAGCGCGGCT-GCATTCTGGCCTGACGTTCATGGACGTATAATAT 1894
Query 2079 CAGCATTGATCATCGCACAAATCCTTTTGATGGGACTATTAAGCACTAAGGGAGCTGCTC 2138
| |||||||||||| ||||||| |||||| ||||| || | ||||| || ||| | ||
Sbjct 1895 CGGCATTGATCATCTCACAAATTCTTTTGTTGGGATTAATGAGCACGAAAGGAAAAGTTC 1954
Query 2139 AGTCCACGCCTTTCCTACTC-TTCTTACCGATCATAACCTTT--TTCTTCCACCGGTACT 2195
|||||||||||||||| ||| |||| | |||| | ||||| || ||| | |||| |
Sbjct 1955 AGTCCACGCCTTTCCTCCTCGTTCT-AGCGATTGTCACCTTCGGTT-TTC-ATCGGTTTT 2011
Query 2196 GCAAAGGCCGGTATGAA-CCAGCATTCCTCCGTCACCCCTTGAAGGAAGCTATGGTCAAA 2254
||||||||||||| || || |||||| || | |||| ||| ||||||||||| | ||
Sbjct 2012 GCAAAGGCCGGTACGAGTCC-GCATTCGTCATTAACCCTTTGCAGGAAGCTATGATTAAG 2070
Query 2255 GATACATTGGAACGAGCAAGAGAACCCAATTTTAATCTGAAACCGTATCTTCAAAAAGCA 2314
|||||||||||| |||||| |||||| || || ||||| ||| || ||||||||| |||
Sbjct 2071 GATACATTGGAAAGAGCAAAAGAACCAAACTTAAATCTTAAAGGGTTTCTTCAAAATGCA 2130
Query 2315 TACATTCATCCGGTTTTCAAAGAC-AACGACTATGAAGAT 2353
|| ||||||||||||||||||||| || || ||||||||
Sbjct 2131 TATATTCATCCGGTTTTCAAAGACGAA-GAAGATGAAGAT 2169
> Ahg342312 jgi|Araly1|342312|fgenesh1_pg.C_scaffold_3002075
Length=2271
Score = 503 bits (272), Expect = 3e-141
Identities = 1627/2251 (72%), Gaps = 213/2251 (9%)
Strand=Plus/Plus
Query 185 ATGGCAACACTAGGA-GATATTGGAGTAGCAGCAGCAATCAACATAC-TCACTGCAATCA 242
||||| |||||| | ||||| ||||| |||||||| ||||| || | | || ||| ||
Sbjct 1 ATGGCTACACTA-AACGATATCGGAGTCGCAGCAGCGATCAATAT-CTTAACCGCATTC- 57
Query 243 TC-TTCCTTT-TGGCATTTGC-AATCTTGAGGA-TTCAACCA-TTCAACGATAGGGTTTA 297
| || |||| | || ||||| | |||| | || |||||||| || ||||| || || ||
Sbjct 58 GCGTT-CTTTATCGCCTTTGCGATTCTT-A-GACTTCAACCAGTT-AACGACAGAGTCTA 113
Query 298 TTTCCCTAAATGGTATCTCAAAGGTATAAGAAGCAGCCCT-TTGCATTCAGGT-GCTCTT 355
||||||||||||||||||||| ||| ||||||| |||||| || | | ||| ||| ||
Sbjct 114 TTTCCCTAAATGGTATCTCAAGGGTTTAAGAAGTAGCCCTATT-AAAACTGGTGGCT-TT 171
Query 356 GTC-AGCAAGTTTGTCAATGTT-AACTTAGGCTCATACCTCCGGTTCTTGAACTGGATGC 413
| | ||||||||||||||| || | || | || ||| || | |||||||| ||||||
Sbjct 172 G-CTAGCAAGTTTGTCAAT-TTGGATTTTCGATCTTACATCAGATTCTTGAATTGGATG- 228
Query 414 CCGC-GGCTCTAAAG-ATGCCTGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCTGC 471
|| | ||| | || |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 229 CCTCAAGCT-TTGAGAATGCCTGAGCCTGAACTTATTGATCATGCTGGTTTGGATTCTGT 287
Query 472 TGTCTACT-TGAGGATTTACTTGA-TAGGGCTT-AAGATCTTTGTACCGATAGCGT-TAC 527
|||||| | | ||||||||||| | | ||| || ||||||||| | || ||||| | ||
Sbjct 288 TGTCTA-TCTCAGGATTTACTT-ACTTGGG-TTGAAGATCTTTTTTCCTATAGCATGTA- 343
Query 528 TTGCTTGGT-C-GATTCTTGTACCTGTCAATTGGA-CTAGTC-ATGGTCTGCAACTAGCT 583
|||||| | | | | | ||||| || ||||||| | | || | || || | | || |
Sbjct 344 TTGCTT-TTACTG-TAATGGTACCGGTTAATTGGACCAACTCGA-CGT-TGGATC-AGTT 398
Query 584 -AAGCTTCGTAATGTGACATCTAGTGATATTGATAAGTTATCCATCTCGAATAT-CGAAA 641
||| || ||| | || || ||||| ||||| | || || |||||||| | ||
Sbjct 399 AAAGAATC-TAA-CT---TTC-AGCGATATCGATAAACTCTCTATATCGAATATAC-CAA 451
Query 642 ATGGATCAGACAGGTTTTGGACT-CACCTTGTG-ATGGCTTACG-CATTCACATTCTGGA 698
||||||| |||||||||| | || ||||| |||||||| | ||| || |||||||
Sbjct 452 CTGGATCATCCAGGTTTTGG-GTGCA-TTTGTGTATGGCTTATGTTATT-ACCTTCTGGA 508
Query 699 CTTGCTATGTTCTTATGAA--AGAGTATGAGAA-AGTAGCTGCTATGCGTTTGGCA-TTT 754
| |||| |||| ||| || |||||| |||| | | | | | ||| | | || |||
Sbjct 509 CATGCTTTGTT-TTA-CAACGAGAGTACAAGAATA-TTGGTTCCATGAGGCT-ACAGTTT 564
Query 755 C-TCCAGAAC-GAGCAACGGCGCCCTGATCAGTTCACGGTT-TTGGTTAGGAACGTACCA 811
| | | | |||||| || | ||||| ||||| || ||| || || |||||| | ||
Sbjct 565 CTTGC--TTCTGAGCAAAGGAGACCTGACCAGTTTACAGTTCTT-GTGAGGAACATTCCT 621
Query 812 GCGGACCCAGATGAGTCCATTAGTG-ACAGTGTGGAACATTTCTTTCTA-GTTAACCATC 869
| || || ||||| ||| |||||| || ||| || ||||||||| | || |||||||
Sbjct 622 CCAGATCCTGATGAATCCGTTAGTGAAC-TTGTTGAGCATTTCTTT-AAGGTCAACCATC 679
Query 870 CGGACCATTATCTTACGCATCAGGTTGTGTACAATGCAAACGATTTGGCAGCATTAGTAG 929
| ||| | || || || | |||| || ||||| |||||| | || | | ||| ||
Sbjct 680 CAGACTACTACCTCACTTACCAGGCGGTCTACAACGCAAACAAACTGTCTGAATTGGTTC 739
Query 930 AGCAGAAGAAGAGCA-CACAGAACTGGCTTGACTATTACCAATTGAAGTA-TACAAGGAA 987
|| ||| ||| | | ||||| |||||||| || || ||| || | | | |||||
Sbjct 740 AGAAGAGGAA-AAAATTGCAGAATTGGCTTGATTACTATCAAAACAAACACT-CTAGGAA 797
Query 988 -CCAGGAAC-ATAA-GCCGAGGATAAAGACGGGTTTTCTCGGGCT-ATGGGG-AAAGAAA 1042
|| | || | || ||| ||||||| ||||||||| |||| ||||| ||| ||
Sbjct 798 TCC--G-ACTAAAAGGCCTTTAATAAAGATAGGTTTTCTC-GGCTGTTGGGGTGAAG-AA 852
Query 1043 GTTGACGCAATCGATCATTATATAGCTGAAATCGAGAAAT-TAAACGAG-CAAATAATG- 1099
||||| ||||||||||| || |||| |||||||| | | |||||| |||||| |
Sbjct 853 GTTGATGCAATCGATCACTACATAGAAAAAATCGAG-GGTCT-AACGAGAAAAATAA-GT 909
Query 1100 GAGGAG-AGGAAAAAAGTGAAGAAAG-ATGATAC-AAGT-G-TAATGCCAGCCGCTTTTG 1154
|| ||| ||| | | |||| | || | | || || | | | |||| || |||||||
Sbjct 910 GAAGAGAAGG-AGACTGTGATG--AGCA-G-CACAAAATCGCTTGTGCCTGCAGCTTTTG 964
Query 1155 TCTCGTTTAAAACACGGTGGGGTGCTGCGGTTAG-TGCACAGACTCAACAGTCGAGTGAT 1213
| || || |||| || ||||| || | ||| | | | || ||||||||||| || |
Sbjct 965 TATCCTTCAAAAGGCGTTGGGGCGCAGTTGTTTGCT-CTCAAACTCAACAGTCAAGAAAC 1023
Query 1214 CCGACTGAATGGTTAACTGAATGGGCTCCCGAGGCACGAGA-AGTGT-TTTGGTCGAACC 1271
||||| || ||| |||| || |||||||| ||| | ||||| | | | | || | || |
Sbjct 1024 CCGACAGAGTGGCTAACCGAGTGGGCTCCAGAGCCCCGAGACA-TATACTGGGAC-AATC 1081
Query 1272 TTGCAATACCTTATGTCTC-TTTAACAGTAAGAAGACTTA-TAAT-GCACATTGCATTCT 1328
| ||| |||| ||||| || | ||| | |||||| || |||| || | || ||||
Sbjct 1082 TAGCATTACCATATGT-TCAACTCACAATCCGAAGAC-TAGTAATAGC-TGTGGCTTTCT 1138
Query 1329 TCTTCCTCACTTTCTTCTTCATGATTCCAATAGCCTTT-GTTCA-ATCCCTTGC-AAGCA 1385
||||||||||||||||||||||||| || ||||| ||| || || | | || || || ||
Sbjct 1139 TCTTCCTCACTTTCTTCTTCATGATCCCTATAGC-TTTCGTGCAGA-CACTCGCCAA-CA 1195
Query 1386 TCGAAGGCATTGAGAAAAA-TGCTCCTTTCCTGAAATC-CATCATCGA-G--AACGATCT 1440
| |||||||| || ||| || ||| ||| ||||| | | | ||||| | || | |
Sbjct 1196 TTGAAGGCATCGA-AAAGGCTGTTCCATTCTTGAAACCGCTT-ATCGAAGTGAAA-A-CG 1251
Query 1441 TTTCAAA-TCGGTT-ATCCAAGGTTTTCTTCCGGGTATCGTGTTAAAGCTCTTTCTAATA 1498
| ||| || || ||||||||||| ||||||||||||| || ||| | || || ||
Sbjct 1252 GT--AAAGTCA-TTCATCCAAGGTTTCCTTCCGGGTATCGCATTGAAGATATTCCTCAT- 1307
Query 1499 TTTC-TGCCAAGCATT-TTGATGGTAATGTCGAAGTTCGAAGGGTTTGTATCGTTA-TCA 1555
| || | |||||||| || ||| |||||||||| |||||||| || || || | ||
Sbjct 1308 TGTCCTCCCAAGCATACTT-ATGCTAATGTCGAAATTCGAAGGCTTCATAA-GTAAATCT 1365
Query 1556 TCGTTAGAGAGAAGAGCG-GCTTTTC-GATATTATATCTTTAA-TCTCATCAATGTCTTC 1612
|| |||| ||||| | | || | |||| || || || | | ||||||| || |||
Sbjct 1366 TCACTAGAAAGAAG-GTGTGCAAG-CAGATACTACATGTTCCAGT-TCATCAACGTTTTC 1422
Query 1613 CTCGGAAGCGTAATCACCGGCTCTGCATTTGAACAGCTTGATT-CTTTCCTAAAACAATC 1671
||| | ||| ||||| | || |||| || |||||||| | ||| |||||| |||||
Sbjct 1423 CTCTGTAGCATAATCGCGGGGACTGCGCTTCAACAGCTTAACAGCTT-CCTAAACCAATC 1481
Query 1672 CGCAAAGGAGATTCCTAAGACGGTTGGGGTAG-CGATACCGATAAAAGCAACGTTT-TTT 1729
|||| || || || ||||| |||| || | ||||||| || || || || ||| |||
Sbjct 1482 TGCAACCGAAATCCCAAAGACAATTGGTGT-GTCGATACCAATGAAGGCCAC-TTTCTTT 1539
Query 1730 ATCACATATATAATGGTGGACGGTTGGGCTGGTATTGCAGGGGAGATTCTGAGGCTGAAA 1789
|| || || |||||||||||||| ||||||||| |||| || ||||| |||||| |||||
Sbjct 1540 ATAACCTACATAATGGTGGACGGATGGGCTGGTGTTGCTGGAGAGATACTGAGGTTGAAA 1599
Query 1790 CCTCTT-ATCTTTT-TCCATATAAAGAACTCCTTA-TTGGTGAAAACCGA-AAAGGATAG 1845
|| || || | | || || | ||||||| ||| ||| ||||||| || |||| ||||
Sbjct 1600 CCA-TTGATAATCTATC-ATCTCAAGAACTTCTTCCTTG-TGAAAACAGAGAAAG-ATAG 1655
Query 1846 AGAAGAAGCAATGAACCCGGGA-C-A--G-AT-CAATTATCATGCGACAGAGCCTCGGAT 1899
|||||| |||||| | || ||| | | | || |||| | | || | | | || | |||
Sbjct 1656 AGAAGAGGCAATGGATCCTGGAACCATAGGATTCAAT-A-C-TG-GTGA-A-CCACAGAT 1709
Query 1900 TCAACTCTACTTCCTCCTCGGTCTTGTCTACGCTC-CTGTGA-CTCCAGTTCTACTCCC- 1956
|||||||||||| | |||||||| || ||||| | |||| | | ||| |||| || ||
Sbjct 1710 ACAACTCTACTTCATTCTCGGTCTAGTTTACGC-CGCTGTTAGCCCCA-TTCTCCTTCCA 1767
Query 1957 TTTCATTATCATCTTCTTCGCATTGGCTTACCTTGTCTTTC-GTCATCAGATCATAAATG 2015
||| || || |||||||||| || ||||| | || || | |||||||||| |||||||
Sbjct 1768 TTT-ATCCTCGTCTTCTTCGCCTTAGCTTATGTGGT-TTACCGTCATCAGATTATAAATG 1825
Query 2016 TGTATAATCAGGAATATGAAAGCGCGGCTAG-GTTCTGGCCAGATGTTCATGGTCGTATA 2074
||||||| || || ||||| || || || | ||||||||| ||||||||| | ||| ||
Sbjct 1826 TGTATAACCAAGAGTATGAGAGTGCTGCC-GCGTTCTGGCCTGATGTTCATAGACGTGTA 1884
Query 2075 AT-ATCAGCATTGATCATCGCACAAATCCTTTTGATGGGACTATTAAGCACTAAGGGAGC 2133
| || ||| | ||| | | || | |||||||||||| | ||||||| || ||||
Sbjct 1885 GTGATT-GCACTAATCGTATCTCAGCTTCTTTTGATGGGATTGCTAAGCACGAAACGAGC 1943
Query 2134 TGCTCAGTCC-ACGCCTTTCCTACTCTT-CTTACC-GATCATAACCTTTTTCTTCCACCG 2190
||||| || | || || || ||| || | || || | | ||||| || ||||||
Sbjct 1944 TGCTC-GTTCGACTCCATTGCTATTCATACTG-CCTG-TGTTAACCATTGGATTCCACAA 2000
Query 2191 GTACTG-CAAAGGCCGGTATGAACC-AGCATTCCTCCG-TCACCCCTTGA-AGGAAGCTA 2246
| ||| ||| || || || |||| | | || || | | |||| || | |||| || |
Sbjct 2001 ATTCTGTCAA-GGACGTTACCAACCTATCTTTG-TCAGAT-ACCCTTT-ACAGGATGCAA 2056
Query 2247 TGGTCAAAGATACATTGGAACG-A-GCAAGAGAACCCAATTTTAATCT-GAAACCGTATC 2303
|||| |||||||| |||||||| | | | ||||||| ||||| || || |||| ||| ||
Sbjct 2057 TGGTTAAAGATACGTTGGAACGCATG-A-GAGAACCGAATTTAAA-CTTGAAAACGTTTC 2113
Query 2304 TTCAAAAAGCATA--CATTCATCCGGT-TTT 2331
||||||| || || || |||||||| |||
Sbjct 2114 TTCAAAACGCGTATGCA--CATCCGGTGTTT 2142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100329705330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5