BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G11980.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920027 jgi|Araly1|920027|scaffold_101308.1                        209    6e-54


> Ahg920027 jgi|Araly1|920027|scaffold_101308.1
Length=226

 Score =  209 bits (113),  Expect = 6e-54
 Identities = 176/205 (86%), Gaps = 10/205 (5%)
 Strand=Plus/Plus

Query  41   ACATTGAGATTGAGCTAACGGACACGATTGAGCGGATCAAAGAACGAATCGAAGA-GAAA  99
            ||||||| ||||| |  | |||||||||||| ||||||||||||| ||||||||| ||||
Sbjct  4    ACATTGACATTGATCCGATGGACACGATTGAACGGATCAAAGAACTAATCGAAGAGGAAA  63

Query  100  GAAGGCATTCCTCCTGTTCATCAAA-G---G--ATCGTCTACACTGGGAAACAACTTGCT  153
              |||||||||||||| ||| |||| |   |   ||||||||||||||||||||||||||
Sbjct  64   -TAGGCATTCCTCCTGATCAACAAAGGCTCGTCTTCGTCTACACTGGGAAACAACTTGCT  122

Query  154  GATGATTTAACCGCCAAACATTACAACCTAGAACGTGGTAGTGTTCTTCATCTTGTTCTT  213
            ||||||||||||||||||||||| |||||| || ||||||||||| ||||||| ||||| 
Sbjct  123  GATGATTTAACCGCCAAACATTATAACCTACAATGTGGTAGTGTTATTCATCTCGTTCTA  182

Query  214  GCCCTTAGAGGTGG-TTGTTGCTAA  237
            || ||||||||||| || || ||||
Sbjct  183  GCTCTTAGAGGTGGGTT-TTACTAA  206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5