BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G11990.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value Ahg471348 jgi|Araly1|471348|fgenesh2_kg.1__1302__AT1G11990.1 2078 0.0 Ahg475111 jgi|Araly1|475111|fgenesh2_kg.2__241__AT1G62330.1 553 2e-156 > Ahg471348 jgi|Araly1|471348|fgenesh2_kg.1__1302__AT1G11990.1 Length=1731 Score = 2078 bits (1125), Expect = 0.0 Identities = 1250/1311 (95%), Gaps = 6/1311 (0%) Strand=Plus/Plus Query 466 CAGAACAAACTTGAGACC-AAAGA-CTTATGGCAGGAGCCGAAGGAACAAGCTTCGGCGT 523 ||||||||||||||| || ||||| | ||||||||||||| ||||||||||||||||||| Sbjct 424 CAGAACAAACTTGAG-CCAAAAGAGC-TATGGCAGGAGCCTAAGGAACAAGCTTCGGCGT 481 Query 524 GGAAGCCTTGTGCGGATCAACGTTCTTTGACTCCTGACGATGGCAAAAATGGATATATTA 583 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 482 GGAAGCCTTGCGCGGATCAACGTTCTTGGACTCCTGACGATGGCAAAAATGGATATATTA 541 Query 584 TGGTAACTGCAAACGGAGGGATTAATCAGCAAAGAGTTGCTGTATGTAACATTGTTGTTG 643 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 542 TGGTAACTGCAAACGGAGGGATTAATCAACAAAGAGTTGCTGTATGTAACATCGTTGTTG 601 Query 644 TAGCTCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGA 703 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 TAGCCCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGA 661 Query 704 CAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGAACATTTTATGGAGTACTTGTCGC 763 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 662 CAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGACCATTTTATGGAGTACTTGTCGC 721 Query 764 CCGATATTCGGATAGTAAAGGAGCTACCAAAAGAGCTTCAATCTCTTA-ATCTTGAAGAA 822 |||||||||||||||||| ||| |||||| | |||||||||||| || | ||||||||| Sbjct 722 CCGATATTCGGATAGTAACGGAACTACCAGAGGAGCTTCAATCT-TTGGACCTTGAAGAA 780 Query 823 ATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTTTATATG 882 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 781 ATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTCTATATG 840 Query 883 ACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAAC 942 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 841 ACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTCGTTGGATTCGGAAAC 900 Query 943 CGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGGTGCAGATGTAACTTT 1002 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 901 CGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGATGCAGATGTAACTTT 960 Query 1003 CATGCGCTAAACTTTGTCCCGAGGATACAAGAAACTGCGGCATTGCTCGTGAAGAGATTA 1062 || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 961 CACGCGCTAAACTTTGTCCCGAGAATACAAGAAACTGCGGCATTGCTCGTGAGGAGATTA 1020 Query 1063 CGGGGCAGTGGATCTTACTACCTTGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCT 1122 |||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1021 CGGGACAGCGGATCATACTACCTCGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCT 1080 Query 1123 CATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAACAGAAAGAGTTGGATTCTTACCGC 1182 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1081 CATTCTCTGTGTTACTTCGGAGGAGGAGAAACAGAACAGAAAGAGTTGGATTCTTACCGC 1140 Query 1183 CAAAAACACTTTCCATCTCTTTCAACTTTAACCAGaaaaaaaaaaTTCCGATCTGCGGAT 1242 |||||||||||||||||||||||||||||||||| |||||||||||| || || |||||| Sbjct 1141 CAAAAACACTTTCCATCTCTTTCAACTTTAACCAAAAAAAAAAAATTTCGGTCCGCGGAT 1200 Query 1243 GTTTTGAGGACAGAAGGACTTTGTCCACTAACACCCGAAGAAGCCGTGCTTATGCTCGCG 1302 ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 1201 GTTTTGAGGACGGAAGGACTTTGTCCATTAACACCCGAAGAAGCTGTGCTTATGCTCGCG 1260 Query 1303 GCTCTTGGCTTCAACCGCGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGA 1362 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GCTCTTGGCTTCAACCGTGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGA 1320 Query 1363 TCAAAACGTTTAGCCGTGTTAACTAGCTTATACCCGAATCTAGTCACCAAAGAAAAGTTA 1422 |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1321 TCAAAACGGTTAGCCGTGTTAACGAGCTTATACCCGAATCTAGTCACCAAAGAGAAGTTA 1380 Query 1423 CTAACAGAATCCGAACTACAACCATTCAAAAACTTTTCATCTCAGCTAGCGGCATTAGAT 1482 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1381 CTAACAGAATCCGAACTACAACCATTTAAAAACTTTTCATCTCAGCTAGCGGCTTTAGAT 1440 Query 1483 TTCATCGCTTGTGCTGCAGCAGACGCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCA 1542 ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1441 TTCATCGCTTGTGCTGCGGCAGACGCGTTTGCGATGACGGATTCAGGGAGTCAGTTATCG 1500 Query 1543 TCTCTTGTATCGGGTTATCGGATTTATTACGGAGGAGGGAAATTGCCGACGATAAGACCG 1602 |||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||| Sbjct 1501 TCTCTTGTATCGGGGTATCGGATATATTACGGAGGAGGGAAAATGCCGACGATTAGACCG 1560 Query 1603 AACAAACGGAGACTTTCGGACATATTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTT 1662 |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| Sbjct 1561 AACAAACGGAGACTTTCGGACATACTGTTGAAGAACAGTACCATTGAGTGGAATGTGTTC 1620 Query 1663 GAGAAAAGAGTAAGAAAAGCGATTAGACAGACGAAACATGTATTCGCTAGACCTAATGGA 1722 ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1621 GAGCGAAGAGTGAGAAAAGCGATTAGACAGACAAAACATGTATTCGCTAGACCTAATGGA 1680 Query 1723 CGCAGCGTTTACCGTTACCCAAGATGTAAAGAATGTATGTGTCATGCATGA 1773 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1681 CGCAGCGTTTACCGTTACCCAAGGTGTAAAGAATGTATGTGTCATGCATGA 1731 Score = 625 bits (338), Expect = 4e-178 Identities = 396/424 (93%), Gaps = 4/424 (1%) Strand=Plus/Plus Query 1 ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCCGAGTCACGTGATCTTGGGGTCTAC 60 ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 1 ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCAGAGTCACGTGATCTAGGTGTCTAC 60 Query 61 GGATGTTCACCGCCTCATTCGCCGCGTCTCGGTCCGACCAGGTTCTAC-GTCTTTGCTGG 119 |||||||||||||||||||| ||||||||||| || | |||||||| | || ||||| || Sbjct 61 GGATGTTCACCGCCTCATTCACCGCGTCTCGGCCCCAACAGGTTCT-CAGTTTTTGCCGG 119 Query 120 AGACCCGAATCCAAAACAAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAA 179 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGACCCGAATCCAAAACTAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAA 179 Query 180 CGATCAAAGAACGGCTAAAACAGCTATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCT 239 ||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| Sbjct 180 CGATCAAAGAACGGCTACAGCAGCCATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCT 239 Query 240 CGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACT 299 Query 300 CTCTGAGAACCCAAAACATGTTTCTGCACAGAATGAAGAGCGTAAAAAGTTTGAAAAAC- 358 |||| | |||||||||| |||||||||||||||||||||||| ||||||| ||||| | Sbjct 300 CTCTAATAACCCAAAACTTGTTTCTGCACAGAATGAAGAGCGCCAAAAGTTCGAAAAGCC 359 Query 359 AGAAGATGAAATATAATGGAACATATGGTAGAATGTTGAGTTTGGCTACTGATGCTTTGG 418 | |||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||| Sbjct 360 A-AAGAGGAAATATAATGGAACTTATGGTAGAATGTTGAGTTTGGCTGCTCATGCTTTGG 418 Query 419 CAGA 422 |||| Sbjct 419 CAGA 422 > Ahg475111 jgi|Araly1|475111|fgenesh2_kg.2__241__AT1G62330.1 Length=2038 Score = 553 bits (299), Expect = 2e-156 Identities = 557/679 (82%), Gaps = 28/679 (4%) Strand=Plus/Plus Query 1100 GGTTTGAAATCGACATGGTGGCTCATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAAC 1159 ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| Sbjct 1277 GGTTTGAAATCGACATGGTGGCTCATTCTCTCTGTTACTTCGGAGGAGGCGATGCAGAAA 1336 Query 1160 AGAAAG-AGTTGGATTCTTACCGCCAAAAACACTTTCC-ATCTCTTTCAACTTTAAC-CA 1216 || | | || ||| ||||||| |||| || ||||| | | || ||| | |||| | Sbjct 1337 AGGCGGAACTT-GATGCTTACCGGGAAAAGCATTTTCCGA-CACTGGCAAATCTAACAAA 1394 Query 1217 GaaaaaaaaaaTTCCGATCTGCGGATGTTTTGAGGACAGAAGGACTTTGTCCACTAACAC 1276 || ||| ||||| || ||| |||| | | |||| || ||||| |||||||| || ||| Sbjct 1395 GACAAAGAAAATGCC-CTCTCCGGACGATCTGAGAACGGAAGGGCTTTGTCCGTTATCAC 1453 Query 1277 CCGAAGAAGCCGTGCTTATGCTCGC-GGCTCTTGGCTTCAACCGCGAA-ACCCGAGTTTT 1334 | |||||||||||||||||||| || || ||| || ||||| || ||| ||||| ||||| Sbjct 1454 CTGAAGAAGCCGTGCTTATGCTTGCAGG-TCTCGGTTTCAATCG-GAAGACCCGTGTTTT 1511 Query 1335 CGTAGCTGGTGCAAACATATATGG-AGG-ATCAAAACGTTTAGCCG-TGTTAACTAGCT- 1390 || ||||||||||| |||||||| || || ||||| ||||||| | ||||| || | Sbjct 1512 TGTGGCTGGTGCAAATATATATGGTGGGAAT--AAACGGTTAGCCGCT-TTAACAAG-TC 1567 Query 1391 TATACCCGAATCTAGTCACCAAAGA-AAAGTTACTAACAGAATCCGAACTACAACCATTC 1449 | ||||| ||||||||||||||||| || | |||| | ||| | || ||| | || ||| Sbjct 1568 TCTACCCAAATCTAGTCACCAAAGAGAATG-TACTCTCTGAAACGGAGCTAGAGCCTTTC 1626 Query 1450 AAAAACTTT-TCATCTCAGCTAGCGGCAT-TAGATTTCATCGCTTGTGCTGCAGCAGACG 1507 ||||| ||| |||||||||||||||| | | |||||||| || || || ||| | |||| Sbjct 1627 AAAAA-TTTCTCATCTCAGCTAGCGG-TTCTTGATTTCATTGCCTGCGCAGCATCGGACG 1684 Query 1508 CTTTTGCGATGACGGATTCAGGGAGTCAGTTATCATCTCTTGTATCGGGTTATCGGATTT 1567 | ||||||||||||||||||||||| ||||| || ||||| || |||||||| ||||| | Sbjct 1685 CCTTTGCGATGACGGATTCAGGGAGCCAGTTGTCGTCTCTGGTCTCGGGTTACCGGATAT 1744 Query 1568 ATTACGGAGGAGGGAAATTGCCGACGATAAGACCGAACAAACGGAGACTT-TCGGACATA 1626 ||||||||| ||||||| |||||||||| |||||||||||||||||| || || |||||| Sbjct 1745 ATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGA-TTCTCAGACATA 1803 Query 1627 TTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTTGAGAAAAGAGTAAGAAAAGCGATT 1686 ||||||||||||| ||| || |||||||| ||||| ||| | ||||| |||||| || || Sbjct 1804 TTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAACGGTT 1863 Query 1687 AGACAGACGAAACATGTATTCGCTAGACCTAA-TGGACGCAGCGTTTACCGTTACCCAAG 1745 || || || ||||||||||| | |||||| || |||||||||||||||||||||||||| Sbjct 1864 AGGCAAACCAAACATGTATTGGTTAGACC-AACGGGACGCAGCGTTTACCGTTACCCAAG 1922 Query 1746 ATGTAAAGAATGTATGTGT 1764 ||||||||||||||||||| Sbjct 1923 ATGTAAAGAATGTATGTGT 1941 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66543658015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5