BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G11990.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471348 jgi|Araly1|471348|fgenesh2_kg.1__1302__AT1G11990.1 2078 0.0
Ahg475111 jgi|Araly1|475111|fgenesh2_kg.2__241__AT1G62330.1 553 2e-156
> Ahg471348 jgi|Araly1|471348|fgenesh2_kg.1__1302__AT1G11990.1
Length=1731
Score = 2078 bits (1125), Expect = 0.0
Identities = 1250/1311 (95%), Gaps = 6/1311 (0%)
Strand=Plus/Plus
Query 466 CAGAACAAACTTGAGACC-AAAGA-CTTATGGCAGGAGCCGAAGGAACAAGCTTCGGCGT 523
||||||||||||||| || ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 424 CAGAACAAACTTGAG-CCAAAAGAGC-TATGGCAGGAGCCTAAGGAACAAGCTTCGGCGT 481
Query 524 GGAAGCCTTGTGCGGATCAACGTTCTTTGACTCCTGACGATGGCAAAAATGGATATATTA 583
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 482 GGAAGCCTTGCGCGGATCAACGTTCTTGGACTCCTGACGATGGCAAAAATGGATATATTA 541
Query 584 TGGTAACTGCAAACGGAGGGATTAATCAGCAAAGAGTTGCTGTATGTAACATTGTTGTTG 643
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 542 TGGTAACTGCAAACGGAGGGATTAATCAACAAAGAGTTGCTGTATGTAACATCGTTGTTG 601
Query 644 TAGCTCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGA 703
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TAGCCCGATTGCTCAATGCGGCTCTCGTCATTCCCAAATTCATGTTAAGTGACGTTTGGA 661
Query 704 CAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGAACATTTTATGGAGTACTTGTCGC 763
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 662 CAGATGCAAGTCAGTTTGGAGATATCTACCAAGAGGACCATTTTATGGAGTACTTGTCGC 721
Query 764 CCGATATTCGGATAGTAAAGGAGCTACCAAAAGAGCTTCAATCTCTTA-ATCTTGAAGAA 822
|||||||||||||||||| ||| |||||| | |||||||||||| || | |||||||||
Sbjct 722 CCGATATTCGGATAGTAACGGAACTACCAGAGGAGCTTCAATCT-TTGGACCTTGAAGAA 780
Query 823 ATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTTTATATG 882
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 ATCGGTAGCGTCGTGACAGATATAGAAGTGATGAAAGAAGCCAAACCAGACTTCTATATG 840
Query 883 ACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTTGTCGGATTCGGAAAC 942
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 841 ACACACATTCTCCCTATACTACTCAAGAACAGAGTAATCCATTTCGTTGGATTCGGAAAC 900
Query 943 CGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGGTGCAGATGTAACTTT 1002
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 CGCTTAGCCTTTGATCCATTACCGTTTGAGTTACAGAGGCTTCGATGCAGATGTAACTTT 960
Query 1003 CATGCGCTAAACTTTGTCCCGAGGATACAAGAAACTGCGGCATTGCTCGTGAAGAGATTA 1062
|| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 961 CACGCGCTAAACTTTGTCCCGAGAATACAAGAAACTGCGGCATTGCTCGTGAGGAGATTA 1020
Query 1063 CGGGGCAGTGGATCTTACTACCTTGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCT 1122
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGGGACAGCGGATCATACTACCTCGCTCTCCATTTACGGTTTGAAATCGACATGGTGGCT 1080
Query 1123 CATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAACAGAAAGAGTTGGATTCTTACCGC 1182
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 CATTCTCTGTGTTACTTCGGAGGAGGAGAAACAGAACAGAAAGAGTTGGATTCTTACCGC 1140
Query 1183 CAAAAACACTTTCCATCTCTTTCAACTTTAACCAGaaaaaaaaaaTTCCGATCTGCGGAT 1242
|||||||||||||||||||||||||||||||||| |||||||||||| || || ||||||
Sbjct 1141 CAAAAACACTTTCCATCTCTTTCAACTTTAACCAAAAAAAAAAAATTTCGGTCCGCGGAT 1200
Query 1243 GTTTTGAGGACAGAAGGACTTTGTCCACTAACACCCGAAGAAGCCGTGCTTATGCTCGCG 1302
||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1201 GTTTTGAGGACGGAAGGACTTTGTCCATTAACACCCGAAGAAGCTGTGCTTATGCTCGCG 1260
Query 1303 GCTCTTGGCTTCAACCGCGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGA 1362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTCTTGGCTTCAACCGTGAAACCCGAGTTTTCGTAGCTGGTGCAAACATATATGGAGGA 1320
Query 1363 TCAAAACGTTTAGCCGTGTTAACTAGCTTATACCCGAATCTAGTCACCAAAGAAAAGTTA 1422
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1321 TCAAAACGGTTAGCCGTGTTAACGAGCTTATACCCGAATCTAGTCACCAAAGAGAAGTTA 1380
Query 1423 CTAACAGAATCCGAACTACAACCATTCAAAAACTTTTCATCTCAGCTAGCGGCATTAGAT 1482
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1381 CTAACAGAATCCGAACTACAACCATTTAAAAACTTTTCATCTCAGCTAGCGGCTTTAGAT 1440
Query 1483 TTCATCGCTTGTGCTGCAGCAGACGCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCA 1542
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1441 TTCATCGCTTGTGCTGCGGCAGACGCGTTTGCGATGACGGATTCAGGGAGTCAGTTATCG 1500
Query 1543 TCTCTTGTATCGGGTTATCGGATTTATTACGGAGGAGGGAAATTGCCGACGATAAGACCG 1602
|||||||||||||| |||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1501 TCTCTTGTATCGGGGTATCGGATATATTACGGAGGAGGGAAAATGCCGACGATTAGACCG 1560
Query 1603 AACAAACGGAGACTTTCGGACATATTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTT 1662
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1561 AACAAACGGAGACTTTCGGACATACTGTTGAAGAACAGTACCATTGAGTGGAATGTGTTC 1620
Query 1663 GAGAAAAGAGTAAGAAAAGCGATTAGACAGACGAAACATGTATTCGCTAGACCTAATGGA 1722
||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1621 GAGCGAAGAGTGAGAAAAGCGATTAGACAGACAAAACATGTATTCGCTAGACCTAATGGA 1680
Query 1723 CGCAGCGTTTACCGTTACCCAAGATGTAAAGAATGTATGTGTCATGCATGA 1773
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1681 CGCAGCGTTTACCGTTACCCAAGGTGTAAAGAATGTATGTGTCATGCATGA 1731
Score = 625 bits (338), Expect = 4e-178
Identities = 396/424 (93%), Gaps = 4/424 (1%)
Strand=Plus/Plus
Query 1 ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCCGAGTCACGTGATCTTGGGGTCTAC 60
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1 ATGGGACAAGAAAGACCTAACGACGAAGAGAGACCAGAGTCACGTGATCTAGGTGTCTAC 60
Query 61 GGATGTTCACCGCCTCATTCGCCGCGTCTCGGTCCGACCAGGTTCTAC-GTCTTTGCTGG 119
|||||||||||||||||||| ||||||||||| || | |||||||| | || ||||| ||
Sbjct 61 GGATGTTCACCGCCTCATTCACCGCGTCTCGGCCCCAACAGGTTCT-CAGTTTTTGCCGG 119
Query 120 AGACCCGAATCCAAAACAAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAA 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGACCCGAATCCAAAACTAACGATAAAGCGATGCAAGAGGAAGAGAATCCAAGCTTGTAA 179
Query 180 CGATCAAAGAACGGCTAAAACAGCTATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCT 239
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 180 CGATCAAAGAACGGCTACAGCAGCCATTGGCGTTATGGCGATTTTGGGTTTCTTTTGCCT 239
Query 240 CGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTTAATTGGTTCATGCTCTCTCGCCTTCACGAAGGTCGGGTCTGGCTTCGAAGAGGACT 299
Query 300 CTCTGAGAACCCAAAACATGTTTCTGCACAGAATGAAGAGCGTAAAAAGTTTGAAAAAC- 358
|||| | |||||||||| |||||||||||||||||||||||| ||||||| ||||| |
Sbjct 300 CTCTAATAACCCAAAACTTGTTTCTGCACAGAATGAAGAGCGCCAAAAGTTCGAAAAGCC 359
Query 359 AGAAGATGAAATATAATGGAACATATGGTAGAATGTTGAGTTTGGCTACTGATGCTTTGG 418
| |||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 360 A-AAGAGGAAATATAATGGAACTTATGGTAGAATGTTGAGTTTGGCTGCTCATGCTTTGG 418
Query 419 CAGA 422
||||
Sbjct 419 CAGA 422
> Ahg475111 jgi|Araly1|475111|fgenesh2_kg.2__241__AT1G62330.1
Length=2038
Score = 553 bits (299), Expect = 2e-156
Identities = 557/679 (82%), Gaps = 28/679 (4%)
Strand=Plus/Plus
Query 1100 GGTTTGAAATCGACATGGTGGCTCATTCTCTATGTTACTTCGGAGGAGGTGAAACAGAAC 1159
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1277 GGTTTGAAATCGACATGGTGGCTCATTCTCTCTGTTACTTCGGAGGAGGCGATGCAGAAA 1336
Query 1160 AGAAAG-AGTTGGATTCTTACCGCCAAAAACACTTTCC-ATCTCTTTCAACTTTAAC-CA 1216
|| | | || ||| ||||||| |||| || ||||| | | || ||| | |||| |
Sbjct 1337 AGGCGGAACTT-GATGCTTACCGGGAAAAGCATTTTCCGA-CACTGGCAAATCTAACAAA 1394
Query 1217 GaaaaaaaaaaTTCCGATCTGCGGATGTTTTGAGGACAGAAGGACTTTGTCCACTAACAC 1276
|| ||| ||||| || ||| |||| | | |||| || ||||| |||||||| || |||
Sbjct 1395 GACAAAGAAAATGCC-CTCTCCGGACGATCTGAGAACGGAAGGGCTTTGTCCGTTATCAC 1453
Query 1277 CCGAAGAAGCCGTGCTTATGCTCGC-GGCTCTTGGCTTCAACCGCGAA-ACCCGAGTTTT 1334
| |||||||||||||||||||| || || ||| || ||||| || ||| ||||| |||||
Sbjct 1454 CTGAAGAAGCCGTGCTTATGCTTGCAGG-TCTCGGTTTCAATCG-GAAGACCCGTGTTTT 1511
Query 1335 CGTAGCTGGTGCAAACATATATGG-AGG-ATCAAAACGTTTAGCCG-TGTTAACTAGCT- 1390
|| ||||||||||| |||||||| || || ||||| ||||||| | ||||| || |
Sbjct 1512 TGTGGCTGGTGCAAATATATATGGTGGGAAT--AAACGGTTAGCCGCT-TTAACAAG-TC 1567
Query 1391 TATACCCGAATCTAGTCACCAAAGA-AAAGTTACTAACAGAATCCGAACTACAACCATTC 1449
| ||||| ||||||||||||||||| || | |||| | ||| | || ||| | || |||
Sbjct 1568 TCTACCCAAATCTAGTCACCAAAGAGAATG-TACTCTCTGAAACGGAGCTAGAGCCTTTC 1626
Query 1450 AAAAACTTT-TCATCTCAGCTAGCGGCAT-TAGATTTCATCGCTTGTGCTGCAGCAGACG 1507
||||| ||| |||||||||||||||| | | |||||||| || || || ||| | ||||
Sbjct 1627 AAAAA-TTTCTCATCTCAGCTAGCGG-TTCTTGATTTCATTGCCTGCGCAGCATCGGACG 1684
Query 1508 CTTTTGCGATGACGGATTCAGGGAGTCAGTTATCATCTCTTGTATCGGGTTATCGGATTT 1567
| ||||||||||||||||||||||| ||||| || ||||| || |||||||| ||||| |
Sbjct 1685 CCTTTGCGATGACGGATTCAGGGAGCCAGTTGTCGTCTCTGGTCTCGGGTTACCGGATAT 1744
Query 1568 ATTACGGAGGAGGGAAATTGCCGACGATAAGACCGAACAAACGGAGACTT-TCGGACATA 1626
||||||||| ||||||| |||||||||| |||||||||||||||||| || || ||||||
Sbjct 1745 ATTACGGAGCAGGGAAAATGCCGACGATCAGACCGAACAAACGGAGA-TTCTCAGACATA 1803
Query 1627 TTGTTGAAGAACAGTACGATTGAGTGGAACGTGTTTGAGAAAAGAGTAAGAAAAGCGATT 1686
||||||||||||| ||| || |||||||| ||||| ||| | ||||| |||||| || ||
Sbjct 1804 TTGTTGAAGAACAATACTATAGAGTGGAAAGTGTTCGAGCAGAGAGTGAGAAAAACGGTT 1863
Query 1687 AGACAGACGAAACATGTATTCGCTAGACCTAA-TGGACGCAGCGTTTACCGTTACCCAAG 1745
|| || || ||||||||||| | |||||| || ||||||||||||||||||||||||||
Sbjct 1864 AGGCAAACCAAACATGTATTGGTTAGACC-AACGGGACGCAGCGTTTACCGTTACCCAAG 1922
Query 1746 ATGTAAAGAATGTATGTGT 1764
|||||||||||||||||||
Sbjct 1923 ATGTAAAGAATGTATGTGT 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5