BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12000.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920029 jgi|Araly1|920029|scaffold_101310.1 2850 0.0
Ahg906167 jgi|Araly1|906167|Al_scaffold_0003_3295 200 3e-50
> Ahg920029 jgi|Araly1|920029|scaffold_101310.1
Length=1741
Score = 2850 bits (1543), Expect = 0.0
Identities = 1664/1724 (97%), Gaps = 2/1724 (0%)
Strand=Plus/Plus
Query 107 CAATGGCCCCTGCTCTCGCCGTTACACGAGATCTCACCGCCGTCGGATCTCCGGAGAATG 166
||||||| |||||||| |||||||| |||||||| ||||||| |||||||| ||||||||
Sbjct 19 CAATGGCTCCTGCTCTTGCCGTTACCCGAGATCTAACCGCCGCCGGATCTCTGGAGAATG 78
Query 167 CTCCTGCGAAAGGACGTGCTTCGGTTTACAGTGAAGTTCAATCAAGCCGTATTAACAACA 226
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 79 CTCCGGCGAAAGGACGTGCTTCGGTTTACAGTGAAGTTCAATCAAGCCGTATCAACAACG 138
Query 227 CTCTTCCTTTGCCTTCTGTTCTCAAAGGAGCTTTCAAAATCGTCGAAGGTCCCGCTAGTT 286
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 139 CTCTTCCTTTGCCTTCTGTTCTTAAAGGAGCTTTCAAAATCGTCGAAGGTCCTGCTAGTT 198
Query 287 CCGCCGCCGGGAATCCAGATGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCAT 346
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CCGCCGCCGGGAATCCAGAGGAGATAGCGAAGTTGTTTCCGGGTCTATATGGCCAGCCAT 258
Query 347 CAGTAGCAGTGGTTCCAGATCAGGA-TGCACCTTCGTCGGCACCGAAATTGAAGATTGGT 405
| |||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||
Sbjct 259 CTGTAGCAGTGGTTCCAGATCA-GAGTGCATCTTTATCGGCACCGAAATTGAAGATTGGT 317
Query 406 GTTGTTTTGTCTGGAGGTCAGGCACCTGGTGGGCACAATGTTATTTCTGGACTGTTTGAT 465
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 318 GTTGTTTTGTCTGGAGGTCAGGCGCCTGGTGGGCACAATGTTATATCTGGACTGTTTGAT 377
Query 466 TACCTGCAAGAGCGTGCGAAAGGTAGCACATTTTACGGGTTCAAGGGTGGTCCAGCTGGT 525
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 378 TACCTGCAAGAGCGTGCGAAAGGTAGTACGTTTTACGGGTTCAAGGGTGGTCCAGCTGGT 437
Query 526 ATCATGAAATGCAAATATGTTGAGTTGAATGCTGAATATATTCAGCCTTACAGAAACCAG 585
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 438 ATCATGAAATGCAAATATGTTGAGTTGAATGCTGAATATATTCATCCTTACAGAAACCAG 497
Query 586 GGTGGTTTTGACATGATCTGCAGTGGAAGAGACAAGATTGAAACACCTGACCAGTTTAAA 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 498 GGTGGTTTTGACATGATCTGCAGTGGAAGAGACAAGATTGAAACACCTGACCAGTTCAAA 557
Query 646 CAAGCTGAAGAAACAGCAAAGAAGCTTGATTTGGATGGGTTGGTGGTTATCGGTGGAGAT 705
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 558 CAAGCTGAAGAAACAGCAAAGAAGCTAGATTTGGATGGATTGGTTGTTATCGGTGGAGAT 617
Query 706 GATTCCAACACCAATGCTTGCCTTCTTGCTGAAAACTTCAGGAGTAAGAACTTGAAAACC 765
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 618 GACTCCAACACCAATGCTTGTCTCCTTGCTGAAAACTTCAGGAGTAAGAACTTGAAAACC 677
Query 766 CGAGTCATTGGGTGCCCCAAGACCATTGATGGTGATTTGAAATGCAAAGAGGTTCCTACT 825
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CGAGTCATTGGTTGCCCCAAGACCATTGATGGTGATTTGAAATGCAAAGAGGTTCCTACT 737
Query 826 AGTTTTGGGTTTGATACAGCTTGCAAGATTTACTCTGAAATGATCGGAAACGTCATGATT 885
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 738 AGTTTTGGGTTTGACACAGCTTGCAAGATTTACTCTGAAATGATTGGAAATGTCATGATT 797
Query 886 GATGCAAGGTCGACTGGAAAGTACTATCATTTTGTAAGACTTATGGGTCGTGCTGCTTCC 945
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 798 GATGCAAGGTCAACTGGAAAGTACTATCATTTTGTACGTCTTATGGGTCGTGCTGCTTCC 857
Query 946 CACATTACGCTTGAGTGTGCTTTACAAACTCACCCAAACATAACCATTATTGGAGAAGAG 1005
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 858 CACATTACGCTTGAGTGTGCTTTACAAACTCACCCAAACATAACAATTATTGGAGAAGAG 917
Query 1006 GTTTCTGCCCAGAAGCAGACTTTGAAGAATGTCACAGACTACATGGTGGATGTTATCTGC 1065
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 918 GTTTCTGCCCAGAAGCAGACTTTGAAGAATGTCACAGACTACATGGTAGATGTTATCTGC 977
Query 1066 AAACGTGCTGAACTTGGTTACAACTACGGTGTCATACTGATTCCAGAAGGTCTGATCGAC 1125
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 978 AAACGTGCTGAACTTGGTTACAACTACGGTGTCATACTGATCCCAGAAGGCCTGATCGAC 1037
Query 1126 TTTATTCCTGAGGTCCAAGAGCTCATTGCTGAACTGAATGAAATTCTGGCAAATGAGGTT 1185
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1038 TTTATTCCTGAGGTCCAAGAGCTGATTGCAGAACTGAATGAAATTCTGGCAAATGAGGTT 1097
Query 1186 GTCGATGAAAATGGTTTGTGGAAGAAGAAGCTCACCGAGCAATCCCTGAAGCTGTTTGAT 1245
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GTCGATGAAAATGGTCTGTGGAAGAAGAAGCTCACCGAGCAATCCCTGAAGCTGTTTGAT 1157
Query 1246 CTTCTGCCTGAAGCAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CTTCTGCCTGAAGCAATTCAGGAACAGCTGATGCTTGAGAGAGACCCACACGGAAATGTC 1217
Query 1306 CAGGTTGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAATTGGAG 1365
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CAGGTGGCTAAGATTGAGACTGAGAAGATGCTTATTCAAATGGTTGAAACTGAATTGGAG 1277
Query 1366 AAAAGAAAGCAAGCTGGTGCATACAAGGGACAATTCATGGGACAGTCACATTTCTTCGGG 1425
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1278 AAAAGAAAGCAAGCTGGTGCATACAAGGGACAATTCATGGGACAATCTCATTTCTTTGGC 1337
Query 1426 TATGAAGGAAGATGCGGCTTGCCCACAAATTTTGATGCCACATACTGTTATGCACTTGGT 1485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1338 TATGAAGGAAGATGCGGCTTGCCCACAAATTTTGATGCCACATACTGTTATGCACTCGGC 1397
Query 1486 TATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACCGGACTAATTTCTTCGGTTGGGAAC 1545
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1398 TATGGCGCTGGAGTACTCCTCAACAGTGGGAAGACTGGACTAATTTCTTCGGTCGGGAAC 1457
Query 1546 TTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTCTCACAGCCTTGATGGAT 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTCTCACAGCCTTGATGGAT 1517
Query 1606 GTCGAGAGGAGACACGGTAAGTTCAAGCCTGTGATCAAGAAAGCAATGGTGGAACTTGAA 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GTCGAGAGGAGACACGGTAAGTTCAAGCCTGTGATCAAGAAAGCAATGGTGGAACTTGAA 1577
Query 1666 GGTGCACCATTTAAGAAATTCGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATAC 1725
|||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||
Sbjct 1578 GGTGCACCGTTTAAGAAATTTGCATCGCTGCGTGAGGAATGGGCATTGAATAACCGATAC 1637
Query 1726 ATCAGCCCAGGTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTA 1785
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1638 ATCAGCCCAGGTCCGATCCAATTCAGTGGACCTGGTTCAGACGCTCTCAGCCACACTCTA 1697
Query 1786 CTTCTTGAACTCGGGGCTCAATAGTCTCTCGACTAACCACCATT 1829
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CTTCTTGAACTCGGGGCTCAATAGTCTCTCGACTAACCACCATT 1741
> Ahg906167 jgi|Araly1|906167|Al_scaffold_0003_3295
Length=183
Score = 200 bits (108), Expect = 3e-50
Identities = 143/160 (89%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 1150 ATTGCTGAACTGAATGAAATTCTGGCAAATGAGGTTGTCGATGAAAATGGTTTGTGGAAG 1209
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4 ATTGCAGAACTGAATGAAATTCTGGCAAATGAGGTTGTCGATGAAAATGGGTTGTGGAAG 63
Query 1210 AAGAAGCTCACCGAGCAATCCCTGAAGCTGTTTGATCTTCTGCCTGAAGCAATTCAGGAA 1269
|||||| |||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 64 AAGAAGATCACTGAGCAATCCCTGAAGGTGTTTGATCGTCTACCTGAAGCAATTCAGGAA 123
Query 1270 CAGCTGAT-GCTTGAGAGAGACCCACACGGAAATGTCCAG 1308
|||||||| || | ||||| | || |||||||||||
Sbjct 124 CAGCTGATTGCAACATT-AGACCAAAACAGAAATGTCCAG 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5