BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12010.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910961 jgi|Araly1|910961|Al_scaffold_0001_1215 1502 0.0
Ahg475105 jgi|Araly1|475105|fgenesh2_kg.2__235__AT1G62380.1 881 0.0
> Ahg910961 jgi|Araly1|910961|Al_scaffold_0001_1215
Length=963
Score = 1502 bits (813), Expect = 0.0
Identities = 914/964 (95%), Gaps = 2/964 (0%)
Strand=Plus/Plus
Query 68 ATGGAGATGAACATTAAGTTTCCAGTTATAGACTTGTCTAAGCTCAATGGTGAAGAGAGA 127
||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAGAAGACCATTAAGTTTCCAGTTATCGACTTGTCTAAGCTCAATGGTAAAGAGAGA 60
Query 128 GACCAAACCATGGCTTTGATCGACGATGCTTGTCAAAACTGGGGCTTCTTCGAGCTGGTG 187
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 GACCAAACCATGGCTTTGATCGAAGATGCTTGTCAAAACTGGGGCTTCTTTGAGCTGGTG 120
Query 188 AACCATGGACTACCATATGATCTAATGGACAACATTGAGAGGATGACAAAGGAACACTAC 247
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACCATGGACTACCATACGATCTAATGGACAACATTGAGAGGATGACAAAGGAACACTAC 180
Query 248 AAGAAACATATGGAACAAAAGTTCAAAGAAATGCTTCGTTCCAAAGGTTTAGATACCCTC 307
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 181 AAGAAACATATGGAACAAAAGTTCAAAGAAATGCTCCGTTCCAAAGGTTTAGATACTCTT 240
Query 308 GAGACCGAAGTTGAAGATGTCGATTGGGAAAGCACTTTCTACCTCCATCATCTCCCTCAA 367
||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GAGACCGAAGTCGAAGATGTTGATTGGGAAAGCACTTTCTACCTCCGCCATCTCCCTCAA 300
Query 368 TCTAACCTATACGACATCCCTGATATGTCAAATGAATACCGATTGGCAATGAAGGATTTT 427
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 301 TCTAACCTCTACGACATCCCTGATATGTCGAACGAATACCGATTGGCAATGAAGGATTTT 360
Query 428 GGGAAGA-GGCTTGAGATTCTAGCTGAAGAGCTATTGGACTTGTTGTGTGAGAATCTAGG 486
|| |||| || | |||| |||||| |||||||||||||| |||||||||||||| |||||
Sbjct 361 GGAAAGATGG-TGGAGAATCTAGCAGAAGAGCTATTGGATTTGTTGTGTGAGAACCTAGG 419
Query 487 GTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAACGGGTCCAACTTTTGCGAC 546
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||
Sbjct 420 GTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAAAGGGCCCAACTTTCGGGAC 479
Query 547 AAAGCTTAGCAACTATCCACCATGTCCTAAACCAGAGATGATCAAAGGGCTTAGGGCTCA 606
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AAAGGTTAGCAACTATCCACCATGTCCTAAACCGGAGATGATCAAAGGGCTTAGGGCTCA 539
Query 607 CACAGATGCAGGAGGCCTCATTTTGCTGTTTCAAGATGATAAGGTCAGTGGTCTCCAGCT 666
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 540 CACAGATGCAGGAGGCCTTATTTTGCTGTTTCAAGACGATAAGGTCAGTGGTCTTCAGCT 599
Query 667 TCTTAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTGTCATCAACCT 726
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTAAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTGTCATCAACCT 659
Query 727 TGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGCACCGTGTGAT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGCACCGTGTGAT 719
Query 787 GACCCAGAAAGAAGGAAACAGGATGTCTATCGCGTCGTTTTACAACCCCGGAAGCGATGC 846
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 720 GACCCAAAAAGAAGGAAACAGGATGTCTATTGCGTCGTTCTACAACCCCGGAAGCGATGC 779
Query 847 TGAGATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAAGCTTTGTGTT 906
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGAAATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAAGCTTTGTGTT 839
Query 907 TGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGGCCAAGGAGCCACGGTTCGA 966
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 TGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGCCCAAGGAGCCACGGTTCGA 899
Query 967 GGCGATGAAAAATGCTGAAGCAGCTGCGGATTTGAATCCGGTGGCTGTGGTTGAGACATT 1026
||||||||| || ||||||| ||| || ||||||||||||||||| | || ||||||||
Sbjct 900 GGCGATGAAGAACGCTGAAGTAGCCGCAGATTTGAATCCGGTGGCCGCCGTCGAGACATT 959
Query 1027 CTAA 1030
||||
Sbjct 960 CTAA 963
> Ahg475105 jgi|Araly1|475105|fgenesh2_kg.2__235__AT1G62380.1
Length=1305
Score = 881 bits (477), Expect = 0.0
Identities = 811/970 (84%), Gaps = 32/970 (3%)
Strand=Plus/Plus
Query 52 agagagagagagagagaTGGAGATGAACATTAAGTTTCCAGTTATAGACTTGTCTAAGCT 111
||||||| | ||| ||||||||| |||||| ||||||||||| |||||||||| |||||
Sbjct 160 AGAGAGAAAAAGAAAGATGGAGAAGAACATGAAGTTTCCAGTGGTAGACTTGTCCAAGCT 219
Query 112 CAATGGTGAAGAGAGAGACCAAACCATGGCTTTGATCGACGATGCTTGTCAAAACTGGGG 171
||||||||||||||||||||||||||||||||| ||| | || |||||| | || |||||
Sbjct 220 CAATGGTGAAGAGAGAGACCAAACCATGGCTTTAATCAATGAAGCTTGTGAGAATTGGGG 279
Query 172 CTTCTTCGAGCTGGTGAACCATGGACTACCATATGATCTA-ATGGACAACATTGAGAGGA 230
||||| ||| | |||||||||||| ||||| |||| || |||||||| || |||| ||
Sbjct 280 GTTCTTTGAGATAGTGAACCATGGATTACCACATGA-CTTGATGGACAAGATCGAGAAGA 338
Query 231 TGACAAAGGAACACTACAAGAAACAT-ATGGAACAAAAGTTCAAAGAAATGCTTC--GTT 287
||||||||||||| ||||||| | | | | ||||||||||||| || ||||| | ||
Sbjct 339 TGACAAAGGAACATTACAAGACATGTCAAG-AACAAAAGTTCAATGATATGCT-CAAGT- 395
Query 288 CCAAAGGTTTAGATACCCT-CGAGACCGAAGTTGAAGATGTCGATTGGGAAAGCACTTTC 346
|||||||||| |||| || | |||| ||||| |||||||| || |||||||||||||||
Sbjct 396 CCAAAGGTTTGGATAATCTTC-AGACAGAAGTCGAAGATGTTGACTGGGAAAGCACTTTC 454
Query 347 TACCTCCATCATCTCCCTCAATCTAACCT-A-TACGACATCCCTGATATGTCAAATGAAT 404
|| | | ||| |||||||| || || || | | ||||| | ||| |||| ||||||
Sbjct 455 TATGTTCGTCACCTCCCTCAGTCCAATCTCAGT--GACATTTCAGATGTGTCTGATGAAT 512
Query 405 ACCG-ATTGGCAATGAAGGATTTTGGGAAGAGGCTT-GAGATTCTAGCTGAAGAGCTATT 462
|| | | ||| ||||| || ||||||||||| || |||| ||| || || ||| | ||
Sbjct 513 ACAGGAC-GGCCATGAAAGACTTTGGGAAGAGA-TTAGAGAATCTTGCAGAGGAGTTGTT 570
Query 463 GGA-CTTGTTGTGTGAGAATCTAGGGTTGGAGAAAGGGTACT-TGAAGAAGGTGTTTCAT 520
||| || || ||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 571 GGATCTACTT-TGTGAGAATCTAGGGTTGGAGAAAGGGTA-TATGAAGAAAGTGTTTCAT 628
Query 521 GGGAC-AACGGGTCCAACTTTTGCGACAAAGCTTAGCAACTATCCACCATGTCCTAAACC 579
|| || || || ||||| |||| ||||||| | ||||| ||||||||||||||||||||
Sbjct 629 GGAACCAAAGGA-CCAACCTTTGGGACAAAGGTGAGCAATTATCCACCATGTCCTAAACC 687
Query 580 AGAGATGATCAAAGGGCTTAGGGCTCACACAGATGCAGGAGGCCTCATTTTGCTGTTTCA 639
||||||||||||||| |||||||| ||||| |||||||||||| |||| ||| |||||||
Sbjct 688 AGAGATGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTGTTTCA 747
Query 640 AGATGATAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGATTGGGTTGATGTTCCTCC 699
||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 748 AGACGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGAGTGGATTGATGTTCCTCC 807
Query 700 TCTCAAGCATTCCATTGTCATCAACCTTGGTGACCAACTTGAGGTGATAACAAACGGGAA 759
|||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 808 TCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGGTGATAACCAACGGGAA 867
Query 760 GTACAAGAGTGTAATGCACCGTGTGATGACCCAGAAAG-AAGGAAACAGGATGTCTATCG 818
|||||||||||| |||||||||||| |||| || | || ||||||| |||||||| || |
Sbjct 868 GTACAAGAGTGTGATGCACCGTGTGGTGACTCA-ACAGGAAGGAAATAGGATGTCGATTG 926
Query 819 CGTCGTTTTACAACCCCGGAAGCGATGCTGAGATCTCTCCGGCAACATCTCTTGTGGATA 878
| ||||||||||| || ||||||||||| ||||||||||| ||||| || ||||| || |
Sbjct 927 CATCGTTTTACAATCCGGGAAGCGATGCCGAGATCTCTCCTGCAACTTCACTTGTCGAGA 986
Query 879 AAGACT-CAAAATACCCAAGCTTT-GTGTTTGATGACTACATGAAACTCTATGCCGGACT 936
|||| | | | ||||| || ||| || ||||||||||||||||| || ||||| || |
Sbjct 987 AAGA-TACCGAGTACCCGAG-TTTCGTCTTTGATGACTACATGAAGCTTTATGCAGGGGT 1044
Query 937 CAAGTTTCAGGCCAAGGAGCCACGGTTCG-AGGCGATGAAAAATGCTGAAGCAGCTGCGG 995
|||||||||| |||||||||||||||||| || | ||||| |||||| |||| | | |
Sbjct 1045 CAAGTTTCAGCCCAAGGAGCCACGGTTCGCAG-CAATGAAGAATGCTTCTGCAGTTACAG 1103
Query 996 ATTTGAATCC 1005
| ||||||||
Sbjct 1104 AATTGAATCC 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5