BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12020.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471351 jgi|Araly1|471351|fgenesh2_kg.1__1305__AT1G12020.1 1033 0.0
> Ahg471351 jgi|Araly1|471351|fgenesh2_kg.1__1305__AT1G12020.1
Length=820
Score = 1033 bits (559), Expect = 0.0
Identities = 698/764 (91%), Gaps = 13/764 (2%)
Strand=Plus/Plus
Query 6 tctctctctctctctTCCATAGAAAA--TATGAAGAAGCTCTACAGAAAAGGAACCGTAC 63
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTATTCCATAGAAAACCTATGAAGAAGCTCTACAGAAAAGGAACCGTAC 60
Query 64 ACCCGTCGCCGCCGCAGATAAAATCCAACGACCACCTTCTTACTCTTCTTCCCGTCGCTA 123
|||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
Sbjct 61 ACCCGTCGCCGCCGCAGATAAAATCCGACGACCACCTTCTCCCTCTCCTTCCCGTCGCCA 120
Query 124 TTTTCTCACTAGCGGCGGTTCTCTCACCGGAAGACCGTGAAGTTTTAGCCTATCTCATAT 183
| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 121 TCTTCTCTCTCGCGGCGGTTCTCTCGCCGGAAGACCGTGAAGTTTTGGCCTATCTCATAT 180
Query 184 CAACCGCATCTTACTCCGGCGAGCGAAACCCTACCTCTCGCCTGAATAAGACCAAAGCCC 243
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 CAACCGCTTCTTACTCCGGCGACCGAAACCCTACCTCTCGTCTGAATAAGACCAAAGCCA 240
Query 244 ACAA-AAAAGCCCTTTTCGACAATCACTCGCCTCTTTTCCACTGTGACTGCTTTAGCTGC 302
|||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ACAAGAAAA-CCCATTTCGACAATCACTCGCCTCTCTTCCACTGTGACTGCTTTAGCTGC 299
Query 303 TACACGAGTTACTGGGTTAGATGGGACTCGTCACCGAGTCGGCAGCTTATTCATGAAATC 362
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 TACACGAGTTACTGGGTCAGATGGGACTCGTCACCGAGTCGTCAGCTTATTCATGAAATC 359
Query 363 ATCGATGCCTTCgaagatagcttggagaagaacaagaacaagaaaaagaacgttactggt 422
||||| || ||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct 360 ATCGACGCTTTCGAAGATAGCTTGGAGAAGAAGAGGAA---GAA---GAACGTTACTGGA 413
Query 423 aagaaagatagaagaaagCGTTCAGGGAAGTCTTCTTCACTTCTTGCTAGTTCTAGCTTT 482
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 414 AAGAAAGATCGAAGAAAGCGTTCAGGGAAGTCTTCTTCAATTCTTGCTAGTTCTAGCTTT 473
Query 483 AGTACGGATGACTCAGAGATTCCGAGTCGACTCGGTGAGTCAGTTGTGAATTCGTGTCCG 542
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 474 AGTACGGAAGAATCAGAGATTCCGAGTCGACTCGGCGAGTCAGTTGTGAATTCGTGTCCA 533
Query 543 TGTACGAGTTCAAGCGAGTTGACTCAAGATGGAGGTGGTTGCAGCGGCGGTTTGGAACCA 602
||| | ||||| ||||||||| ||||| |||| |||||||||| ||||||| |||| |||
Sbjct 534 TGTTCAAGTTCGAGCGAGTTGGCTCAAAATGGTGGTGGTTGCAACGGCGGTATGGAGCCA 593
Query 603 ATGGA-GtttttttGTGCCGGAGACGCTTGTGAGAAGGTGGAGGAGGAGAAGGGAACCGT 661
| ||| | ||||| ||||| |||||||||||||| ||| |||||| ||||||||||||||
Sbjct 594 ACGGATGATTTTT-GTGCCCGAGACGCTTGTGAGGAGGCGGAGGATGAGAAGGGAACCGT 652
Query 662 GAGGAGATTTGTGAGTTTTATTGGTGAGAAAGTTTTTGGTGTTTGGGGATAAGAAAATTT 721
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 653 GAGGAGATTTTTGAGTTTCATTGGTGAGAAAGTTTTAGGTGTTTGGGGATAAGAAAGTTT 712
Query 722 TGC-TACAAAATTACAAGAAATAAAATGCTCGAAATGGTTTTTT 764
||| || ||||||||||||||||||||| | |||||| ||||||
Sbjct 713 TGCCTATAAAATTACAAGAAATAAAATGTTAGAAATGTTTTTTT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5