BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G12020.1 Length=876 Score E Sequences producing significant alignments: (Bits) Value Ahg471351 jgi|Araly1|471351|fgenesh2_kg.1__1305__AT1G12020.1 1033 0.0 > Ahg471351 jgi|Araly1|471351|fgenesh2_kg.1__1305__AT1G12020.1 Length=820 Score = 1033 bits (559), Expect = 0.0 Identities = 698/764 (91%), Gaps = 13/764 (2%) Strand=Plus/Plus Query 6 tctctctctctctctTCCATAGAAAA--TATGAAGAAGCTCTACAGAAAAGGAACCGTAC 63 ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTCTCTATTCCATAGAAAACCTATGAAGAAGCTCTACAGAAAAGGAACCGTAC 60 Query 64 ACCCGTCGCCGCCGCAGATAAAATCCAACGACCACCTTCTTACTCTTCTTCCCGTCGCTA 123 |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| | Sbjct 61 ACCCGTCGCCGCCGCAGATAAAATCCGACGACCACCTTCTCCCTCTCCTTCCCGTCGCCA 120 Query 124 TTTTCTCACTAGCGGCGGTTCTCTCACCGGAAGACCGTGAAGTTTTAGCCTATCTCATAT 183 | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 121 TCTTCTCTCTCGCGGCGGTTCTCTCGCCGGAAGACCGTGAAGTTTTGGCCTATCTCATAT 180 Query 184 CAACCGCATCTTACTCCGGCGAGCGAAACCCTACCTCTCGCCTGAATAAGACCAAAGCCC 243 ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 181 CAACCGCTTCTTACTCCGGCGACCGAAACCCTACCTCTCGTCTGAATAAGACCAAAGCCA 240 Query 244 ACAA-AAAAGCCCTTTTCGACAATCACTCGCCTCTTTTCCACTGTGACTGCTTTAGCTGC 302 |||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 ACAAGAAAA-CCCATTTCGACAATCACTCGCCTCTCTTCCACTGTGACTGCTTTAGCTGC 299 Query 303 TACACGAGTTACTGGGTTAGATGGGACTCGTCACCGAGTCGGCAGCTTATTCATGAAATC 362 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 300 TACACGAGTTACTGGGTCAGATGGGACTCGTCACCGAGTCGTCAGCTTATTCATGAAATC 359 Query 363 ATCGATGCCTTCgaagatagcttggagaagaacaagaacaagaaaaagaacgttactggt 422 ||||| || ||||||||||||||||||||||| | ||| ||| |||||||||||| Sbjct 360 ATCGACGCTTTCGAAGATAGCTTGGAGAAGAAGAGGAA---GAA---GAACGTTACTGGA 413 Query 423 aagaaagatagaagaaagCGTTCAGGGAAGTCTTCTTCACTTCTTGCTAGTTCTAGCTTT 482 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 414 AAGAAAGATCGAAGAAAGCGTTCAGGGAAGTCTTCTTCAATTCTTGCTAGTTCTAGCTTT 473 Query 483 AGTACGGATGACTCAGAGATTCCGAGTCGACTCGGTGAGTCAGTTGTGAATTCGTGTCCG 542 |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 474 AGTACGGAAGAATCAGAGATTCCGAGTCGACTCGGCGAGTCAGTTGTGAATTCGTGTCCA 533 Query 543 TGTACGAGTTCAAGCGAGTTGACTCAAGATGGAGGTGGTTGCAGCGGCGGTTTGGAACCA 602 ||| | ||||| ||||||||| ||||| |||| |||||||||| ||||||| |||| ||| Sbjct 534 TGTTCAAGTTCGAGCGAGTTGGCTCAAAATGGTGGTGGTTGCAACGGCGGTATGGAGCCA 593 Query 603 ATGGA-GtttttttGTGCCGGAGACGCTTGTGAGAAGGTGGAGGAGGAGAAGGGAACCGT 661 | ||| | ||||| ||||| |||||||||||||| ||| |||||| |||||||||||||| Sbjct 594 ACGGATGATTTTT-GTGCCCGAGACGCTTGTGAGGAGGCGGAGGATGAGAAGGGAACCGT 652 Query 662 GAGGAGATTTGTGAGTTTTATTGGTGAGAAAGTTTTTGGTGTTTGGGGATAAGAAAATTT 721 |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||| Sbjct 653 GAGGAGATTTTTGAGTTTCATTGGTGAGAAAGTTTTAGGTGTTTGGGGATAAGAAAGTTT 712 Query 722 TGC-TACAAAATTACAAGAAATAAAATGCTCGAAATGGTTTTTT 764 ||| || ||||||||||||||||||||| | |||||| |||||| Sbjct 713 TGCCTATAAAATTACAAGAAATAAAATGTTAGAAATGTTTTTTT 756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32442602367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5