BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12030.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471352 jgi|Araly1|471352|fgenesh2_kg.1__1306__AT1G12030.1 1476 0.0
> Ahg471352 jgi|Araly1|471352|fgenesh2_kg.1__1306__AT1G12030.1
Length=994
Score = 1476 bits (799), Expect = 0.0
Identities = 935/1000 (94%), Gaps = 12/1000 (1%)
Strand=Plus/Plus
Query 1 GAAATCAAGAAAAGGGCATAAAATGGTAGAGATAGGAGGACGATTTATCAGAACAGCGGC 60
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAATCAAGAAAAAGGCATAAAATGGTAGAGATAGGGGGACGATTTATCAGAACAGCGGC 60
Query 61 GGCTTTTGATGTGGCGGCGGCGCGTGCACGCCCTCCGTGCGCTAGCAGCAGCGGAAGCGA 120
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GGCTTTTGATGTAGCGGCGGCGCGTGCACGTCCTCCGTGCGCTAGCAGCAGCGGAAGCGA 120
Query 121 TCACTCTCCGGATGACACAGAAGATCTTTGGGATCTGGTCGAATCTTTTATCGACAGAGA 180
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCACTCTCCGGATGACTCAGAAGATCTTTGGGATCTGGTCGAGTCTTTTATCGACAGAGA 180
Query 181 AGTGGAAACTTTACCTGAGGATGCTTTTCAGGAAGAAGAAGATGATAAATCGGATGAGGA 240
||||||||||||||||||||| |||||| ||||||||| | | |||||||||||||||||
Sbjct 181 AGTGGAAACTTTACCTGAGGAGGCTTTTGAGGAAGAAG-A-A-GATAAATCGGATGAGGA 237
Query 241 TTACGAAGATGTGAAGGAGAGGTTACGGGAGATTCTTGAAAACCACGGAGGCGAAGAGCG 300
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 TTACGAAGATGTGAAGGAAAGGTTACGGGAGATTCTTGAAAATCACGGAGGCGAAGAGCG 297
Query 301 GCAGAGAATAATGGATGAGGCGGTAAATGCTAGTCGGGTCTTCGCCGGGGAGAAACGTCA 360
|| |||||| |||||||||||||| |||||||||||| || | | ||| || ||||||||
Sbjct 298 GCGGAGAATCATGGATGAGGCGGTTAATGCTAGTCGGTTCGTGGTCGGAGAAAAACGTCA 357
Query 361 CTTTATGGCTTATCTACGTAACAAAGGTTTTGATGCAGGTCTCTGCAAGTCTCGATGGGA 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 358 ATTTATGGCTTATCTACGTAACAAAGGTTTTGATGCAGGTCTCTGCAAGTCCCGGTGGGA 417
Query 421 GAAATTTGGTAAGAACACGGCTGGGAAGTACGAGTATGTAGACGTTAAGGCAGGAGATAA 480
||||||||||||||||||||| |||||||||||||| || ||||| |||| |||||||||
Sbjct 418 GAAATTTGGTAAGAACACGGCCGGGAAGTACGAGTACGTGGACGTCAAGGTAGGAGATAA 477
Query 481 GAACCGTTACATCGTCGAGACAAATCTTGCCGGAGAGTTCGAGATTGCACGGCCAACGAC 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 GAACCGTTACATCGTCGAGACAAATCTTGCCGGAGAGTTCGAGATTGCTCGGCCAACGAC 537
Query 541 AAGATACCTCTCCGTCTTAGCTCAAGTGCCACGTGTCTTTGTGGGAACACCTGAGGAGCT 600
||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 538 AAGATACCTCTCCCTCTTAGCTCAACTGCCGCGTGTCTTTGTGGGAACACCTGAGGAGCT 597
Query 601 GAAACAGCTTGTGAGGATCATGTGCTTTGAGATCAGGCGGTCGATGAAGCGAGCGGATAT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 598 GAAACAGCTTGTGAGGATCATGTGCTTTGAGATCAGGCGGTCGATGAAGCGAGCCGAGAT 657
Query 661 TTTCGTGCCGCCGTGGAGAAGGAATGGTTATATGCAAGCCAAGTGGTTCGGTCACTATAA 720
|| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 658 TTACGTGCCGCCATGGAGAAGGAACGGTTATATGCAAGCCAAGTGGTTTGGTCACTATAA 717
Query 721 ACGAACCTCAAACGAAGTGGTGAGTAGGGTTAAGAGCTGCGGCTGTGGACCGCGTGTAGG 780
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 ACGAACCTCTAACGAAGTGGTGAGTAGGGTTAAGAGCTGTGGCTGTGGACCGCGTGTAGG 777
Query 781 GTTTGAAGAATCGGTTAAAATGACGACCTTTAATGGTTTTAAAGATGGGGAGATGAGGAG 840
|||||||||||||||||||| |||| | |||| ||| ||||| || |||||||||| |||
Sbjct 778 GTTTGAAGAATCGGTTAAAACGACGGCGTTTATTGGCTTTAACGAGGGGGAGATGAAGAG 837
Query 841 GAGTGGTC-TAAAGGTTGGCCAGCTAACGGTGGCTTTCAACGGCAGTGAAGTGGGGTTGC 899
|||||| | |||||||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 838 GAGTGG-CTTAAAGGTTGGCCGGCTTACGGTGGCTTTCACCGGCAGTGAAGTGGGGTTGC 896
Query 900 AAATATTTTAGAATAAAGTATAGGGCTCTAGGTGTTGATGTTTCAGAGTTCTTTATA-C- 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 897 AAATATTTTAGAATAAAGTATAGGGCTCTAGGTGTTGATGTTTCAGAGTTCTTTAGAGCA 956
Query 958 TA-T--ATTGTAAATATATATAAGTTTTGGGGGTTTAGAG 994
|| | ||||||||| |||| | | |||||||||||||||
Sbjct 957 TACTTTATTGTAAATGTATA-A-GCTTTGGGGGTTTAGAG 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5