BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12040.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312231 jgi|Araly1|312231|fgenesh1_pm.C_scaffold_1001011 1694 0.0
Ahg475099 jgi|Araly1|475099|fgenesh2_kg.2__229__AT1G62440.1 832 0.0
> Ahg312231 jgi|Araly1|312231|fgenesh1_pm.C_scaffold_1001011
Length=1725
Score = 1694 bits (917), Expect = 0.0
Identities = 1028/1083 (95%), Gaps = 2/1083 (0%)
Strand=Plus/Plus
Query 37 ATGTTGTTCCCTCCTCTTCGTTCCCTCTTTCTCTTCACCCTCTTGCTCTCCTCCGTTTGT 96
||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||
Sbjct 1 ATGTTGTTCCCTCCTCTCCGTTCCCTCTTTTTCCTCACCCTCTTGCTCTCCTCCTTTTGT 60
Query 97 TTCTTACAAATCAAAGCAGACCACGACGATGAAAGCGACTTGGGCAGTGATATCAAAGTA 156
|||||||| ||||||||||| |||| ||||||||||||||| | |||| |||||||||||
Sbjct 61 TTCTTACAGATCAAAGCAGATCACGGCGATGAAAGCGACTTAGACAGTCATATCAAAGTA 120
Query 157 GACAAACGTCTCAAGTTCGAGAACCCGAAGCTACGTCAAGCCTACATTGCTCTTCAATCA 216
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GACAAACGTCTCAAGTTCGAGAACCCGAAGCTACGTCAAGCCTACATTGCTCTCCAATCA 180
Query 217 TGGAAAAAAGCAATCTTTTCTGATCCTTTCAACTTCACAGCTAATTGGAATGGTTCAGAT 276
|||||| |||||||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 181 TGGAAACAAGCAATCTTCTCTGATCCTTTCAACTTTACAGCTAATTGGAACGGCTCAGAT 240
Query 277 GTTTGCTCCTACAATGGAATCTATTGTGCTCCTTCTCCTTCATACCCGAAAACCCGAGTC 336
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GTTTGCTCCTACAATGGAATCTATTGTGCTCCTTCACCTTCATACCCGAAAACCCGAGTC 300
Query 337 GTTGCTGGCATTGACCTCAACCACGCTGACATGGCCGGTTACTTGGCTTCCGAGCTAGGT 396
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 GTTGCTGGCATTGACCTCAACCACGCTGACATGGCTGGTTACTTGGCTTCCGAGCTTGGT 360
Query 397 CTCCTCTCTGATCTCGCTCTGTTCCACATTAACTCAAACCGTTTCTGCGGTGAAGTCCCT 456
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCCTCTCCGATCTCGCTCTATTCCACATTAACTCAAACCGTTTCTGCGGTGAAGTCCCT 420
Query 457 CTCACGTTTAACCGCATGAAGCTTCTCTACGAGCTTGATCTTAGCAACAACCGATTCGTC 516
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 421 CTCACGTTTAACCGCATGAAGCTTCTTTACGAGCTTGATCTTAGTAACAACCGATTCGTC 480
Query 517 GGTAAGTTCCCTAAGGTTGTCCTCTCTTTGCCTTCCCTTAAATTCTTGGATCTCCGCTAC 576
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 481 GGTAAGTTCCCTAAGGTTGTCCTCTCGTTGCCTTCCCTCAAATTCTTGGATCTCCGCTAC 540
Query 577 AACGAGTTTGAAGGCAAGATCCCATCAAAGCTCTTCGATAGAGAGCTTGACGCTATATTC 636
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 541 AACGAGTTTGAAGGCAAGATCCCATCAAAGCTCTTCGATAGAGAGCTCGATGCTATATTC 600
Query 637 TTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAAAACATGGGAAATTCCCCTGTTTCT 696
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 601 TTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAGAACATGGGGAATTCCCCTGTTTCC 660
Query 697 GCTCTGGTTCTTGCGGACAACAATCTCGGAGGATGCATACCGGGAAGTATCGGTCAAATG 756
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GCTCTGGTTCTTGCGGACAATAATCTGGGAGGATGCATACCGGGAAGTATCGGTCAAATG 720
Query 757 GGGAAAACACTCAACGAGCTTATCCTCTCCAACGACAACTTAACCGGTTGTTTACCTCCT 816
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGAAGACACTCAACGAGCTAATCCTCTCCAACGACAACTTAACCGGTTGTTTACCTCCT 780
Query 817 CAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACATCACTTCAAACCGTCTACAAGGT 876
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 CAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACATCAGTTCAAACCGTCTACAAGGT 840
Query 877 CCGTTACCATCTAGCGTTGGTAACATGAAGAGCCTAGAAGAGCTTCACGTGGCTAACAAT 936
|| |||||||||||| | || |||||||||||| ||||||||||||||||||||||||||
Sbjct 841 CCATTACCATCTAGCATCGGAAACATGAAGAGCTTAGAAGAGCTTCACGTGGCTAACAAT 900
Query 937 GCCTTCACAGGAGTTATTCCTCCAAGTATCTGCCAGCTTTCTAACCTTGAGAACTTTACT 996
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 901 GGCTTCACAGGAGTTATTCCTCCAAGTATCTGCCAGCTTTCTAATCTTGAGAACTTCACT 960
Query 997 TACTCTTCCAACTACTTCTCCGGTCGTCCTCCTATATGCGCAGCTAGTTTGTTAGCCGAC 1056
||||||||||||| ||||||||||||||||||| | ||||||||||||| ||| |||||
Sbjct 961 TACTCTTCCAACTTCTTCTCCGGTCGTCCTCCTGTGTGCGCAGCTAGTTCGTTGGCCGAT 1020
Query 1057 ATTGTGGTGAACGGTACCATGAACTG-CATCACCGGTTTGGCTCGTCAAAGATCGGATAA 1115
|||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||
Sbjct 1021 GCTGTGGTGAACGGTACCATGAACTGTC-TAACCGGTTTGGCTCGTCAAAGATCGGCTAA 1079
Query 1116 ACA 1118
|||
Sbjct 1080 ACA 1082
Score = 632 bits (342), Expect = 3e-180
Identities = 494/564 (88%), Gaps = 24/564 (4%)
Strand=Plus/Plus
Query 1726 ACACAAAGCCCTCCACCACCATCGCCAGTATACTACCCACCGGTGACA-AACAGTCCACC 1784
||||||||||| ||||||||||| || |||||||| ||||| || ||| || || || ||
Sbjct 1168 ACACAAAGCCCGCCACCACCATCACCGGTATACTATCCACCAGTAACACAA-AGCCCTCC 1226
Query 1785 ACCACCATCACCGGTATACTATCCC-CCAGTAACATACAGTCCACCACCACCATCACCAG 1843
||||||||| || |||||||| ||| || || ||| ||||||||||||||| |||||| |
Sbjct 1227 ACCACCATCGCCAGTATACTA-CCCACCGGTGACAAACAGTCCACCACCACAATCACCGG 1285
Query 1844 TTTACTATCC-CCAAGTAACACCA-AGTCCTCCACCACCATCGCCGCTATACTATCCCCC 1901
| |||||||| || || |||| | ||||| |||||||| || ||| | ||||||||
Sbjct 1286 TATACTATCCGCC-AGAAACA-TACAGTCCACCACCACCGTCACCGGTTTACTATCCGTG 1343
Query 1902 AGTAACaccaagtccaccaccaccatcaccagtttactatcccccagtaacaccaagtcc 1961
| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1344 GGAAACACCAAGTCCTCCACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGTCC 1403
Query 1962 tccaccaccatcaccaGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCACC 2021
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1404 TCCACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGCCCTCCACCACCATCACC 1463
Query 2022 AGTTTACTATCCATCGGAAACACAAAGTCCTCCACCACCTACTGAGTACTACTATTCACC 2081
|| || |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 1464 GGTATATTATCCATCGGAAACACCAAGTCCTCCACCACCCACTGAGTACTATTATTCACC 1523
Query 2082 AAGCCAGTCTCCGCCACCAACAAAAGCATGTAAAGAAGGCCATCCACCACAAGCAACACC 2141
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1524 AAGCCAGTCTCCGCCACCAACAAAACCATGTAACGAAGGCCATCCACCACAAGCAACACC 1583
Query 2142 AAGTTACGAACCACCTCCAGAATATTCATACTCATCATCACCACCACCA-C-CATC--TC 2197
||||||||||||| |||| |||||| ||||||||||||||||||||||| | | || ||
Sbjct 1584 AAGTTACGAACCAACTCCTGAATATACATACTCATCATCACCACCACCATCTCCTCCGTC 1643
Query 2198 CTACGTCCT-ACT--TT----CCACCGATGCCAAGCGTCTCATATGATGCATCTCCTCCT 2250
|||| || | ||| || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1644 CTAC-TC-TGACTCGTTTGTTCCACCGATTCCAAGTGTCTCATATGATGCATCTCCTCCT 1701
Query 2251 CCTCCTCC---GTCTTACTACTAG 2271
|||||||| |||||||||||||
Sbjct 1702 CCTCCTCCTCCGTCTTACTACTAG 1725
Score = 481 bits (260), Expect = 1e-134
Identities = 311/336 (93%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 1681 ACACAAAGCCCTCCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCA 1740
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 ACACAAAGCCCGCCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCA 1227
Query 1741 CCACCATCGCCAGTATACTACCCACCGGTGACAAACAGTCCACCACCACCATCACCGGTA 1800
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1228 CCACCATCGCCAGTATACTACCCACCGGTGACAAACAGTCCACCACCACAATCACCGGTA 1287
Query 1801 TACTATCCCCCAGTAACATACAGTCCACCACCACCATCACCAGTTTACTATCCCCAAGTA 1860
|||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| | |
Sbjct 1288 TACTATCCGCCAGAAACATACAGTCCACCACCACCGTCACCGGTTTACTATCCGTGGGAA 1347
Query 1861 ACACCAAGTCCTCCACCACCATCGCC-GCTATACTATCCCCCAGTAACaccaagtccacc 1919
||||||||||||||||||||||| || | | |||||||||||||||||||||||||| ||
Sbjct 1348 ACACCAAGTCCTCCACCACCATCACCCGTT-TACTATCCCCCAGTAACACCAAGTCCTCC 1406
Query 1920 accaccatcaccagtttactatcccccagtaacaccaagtcctccaccaccatcaccaGT 1979
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1407 ACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGCCCTCCACCACCATCACCGGT 1466
Query 1980 TTACTATCCCCCAGTAACACCAAGTCCTCCACCACC 2015
|| ||||| | | |||||||||||||||||||||
Sbjct 1467 ATATTATCCATCGGAAACACCAAGTCCTCCACCACC 1502
Score = 298 bits (161), Expect = 1e-79
Identities = 242/281 (86%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 1783 CCACCACCATCACCGGTATACTATCCCCCAGTAACATACAGTCCACCACCACCATCACCA 1842
|||||||||||||||||||||||||| ||||||||| | || || ||||||||||| |||
Sbjct 1180 CCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCACCACCATCGCCA 1239
Query 1843 GTTTACTATCCC-CAAGTAAC-ACCAAGTCCTCCACCACCATCGCCGCTATACTATCCCC 1900
|| ||||| ||| | || || | | ||||| ||||||| ||| ||| |||||||||| |
Sbjct 1240 GTATACTA-CCCACCGGTGACAAAC-AGTCCACCACCACAATCACCGGTATACTATCCGC 1297
Query 1901 CAGTAACacca-agtccaccaccaccatcaccagtttactatcccccagtaacaccaagt 1959
||| |||| | |||||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 1298 CAGAAACA-TACAGTCCACCACCACCGTCACCGGTTTACTATCCGTGGGAAACACCAAGT 1356
Query 1960 cctccaccaccatcaccaGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCA 2019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CCTCCACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCA 1416
Query 2020 CCAGTTTACTATCCATCGGAAACACAAAGTCCTCCACCACC 2060
|| ||||||||||| | | ||||| ||| |||||||||||
Sbjct 1417 CCCGTTTACTATCCCCCAGTAACACCAAGCCCTCCACCACC 1457
Score = 110 bits (59), Expect = 7e-23
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1159 TTTGGATGTTACAACATCTTCTCTCCACCACCACCGACGTTTAAGATGTCACCTGAAGTC 1218
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 1083 TTTGGATGTTACAACATCTTCTCTCCACCACCACCAACGTTCAAGATGTCACCTGAGGAC 1142
Query 1219 CGGACACTTCCTCC 1232
|||| |||||||||
Sbjct 1143 CGGAAACTTCCTCC 1156
> Ahg475099 jgi|Araly1|475099|fgenesh2_kg.2__229__AT1G62440.1
Length=2142
Score = 832 bits (450), Expect = 0.0
Identities = 902/1116 (81%), Gaps = 48/1116 (4%)
Strand=Plus/Plus
Query 144 TGATATCAAAGTAGA-CAAACGTCTCAAGTTCGAGAACCCGAAG-CTACGTCAAGCCTAC 201
|||||||||||| || | | |||||||||| || |||||| || || || |||||||||
Sbjct 33 TGATATCAAAGTCGACCCGA-GTCTCAAGTTTGAAAACCCG-AGTCTTCGACAAGCCTAC 90
Query 202 ATTGCTCTTCAATCATGGAAAAAAGCAATCTTT-TCTGATCCTTTCAACTTCACAGCTAA 260
||||||||||||||||||||| |||| || ||| ||||||||||| |||||||| |||||
Sbjct 91 ATTGCTCTTCAATCATGGAAACAAGCTAT-TTTCTCTGATCCTTTTAACTTCACTGCTAA 149
Query 261 TTGGAATGGTTCAGATGTTTGCTCCTACAATGGAATCTAT-TGTGCTCCTTCTCCTTCAT 319
||||||||| || |||||||| |||||||| || |||| | ||||||||||||||||| |
Sbjct 150 TTGGAATGGCTCTGATGTTTGTTCCTACAACGGTATCT-TCTGTGCTCCTTCTCCTTC-T 207
Query 320 AC-CCGAAAACCCGAGTCGTTGCTGGCATTGACCTCAACCACGCTGACATGGCCGGTTAC 378
| |||||||| ||||| ||||| || |||||||| ||||| || |||||||| |||||
Sbjct 208 AGTCCGAAAACTCGAGTTGTTGCGGGTATTGACCTTAACCATGCGGACATGGCTGGTTAT 267
Query 379 TTGGCTTCC-GAGCTAGGTCTCCTCTCTGATCTCGCTCTGTTCCA-CATTAACTCAAACC 436
|| || | ||||| ||||| ||| ||||||| ||||| || || | | ||||||||||
Sbjct 268 TTACCT-CGTGAGCTTGGTCTTCTCACTGATCTTGCTCTCTTTCATC-TCAACTCAAACC 325
Query 437 GTTTCTGCGGTGAAGTCCCTCTCACGTTTAACCGCATGAAGCTTCTCTACGAGCTTGATC 496
| ||||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||
Sbjct 326 GCTTCTGTGGTGAAGTTCCTATCACCTTTAAAAACATGAAGCTTCTCTTCGAGCTTGAT- 384
Query 497 TTA-GCAACAACCGATTCGTCGGTAAGTTCCCTAAGGTTGTCCTCTCTTTGCCTTCCCTT 555
||| | ||||| || || || || |||||||||||||||||| | ||||||||||||||
Sbjct 385 TTAAGTAACAATCGTTTTGTTGGGAAGTTCCCTAAGGTTGTCTTGTCTTTGCCTTCCCTC 444
Query 556 AAATTCTTGGATCTCCGCTACAACGAGTTTGAAGGCAAG-ATCCCATCAAAGCTCTTCGA 614
|| ||||||||||| || ||||||||||||||||| | ||||| || ||||| |||||
Sbjct 445 AAGTTCTTGGATCTTCGGTACAACGAGTTTGAAGGTG-GTATCCCTTCGAAGCTATTCGA 503
Query 615 TAGAGAGCTTGACGCTATATTCTTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAAAA 674
|| |||||||||||| ||||||||||| ||||||||||| ||||| || || ||| ||||
Sbjct 504 TAAAGAGCTTGACGCAATATTCTTGAATCATAACCGGTTTCGGTTTGGAATACCCGAAAA 563
Query 675 CATGGGAAATTCCCCTGTTTCTGCTCTGGTTCTTGCGGACAACAATCTCGGAGGATGCAT 734
||||||||| || || ||||||||||| ||||||||||| || |||| ||||| |||||
Sbjct 564 CATGGGAAACTCTCCGGTTTCTGCTCTTGTTCTTGCGGATAATGATCTTGGAGGTTGCAT 623
Query 735 ACCGGGAAGTATCGGTCAAATGGGGAAA-ACACTCAACGAGCTTATCCTCTCCAACGACA 793
||||||||||| ||| |||||| ||| || || |||||| | |||||||| ||||| |
Sbjct 624 TCCGGGAAGTATTGGTTTAATGGG-AAAGACTCTTAACGAGATCATCCTCTCTAACGATA 682
Query 794 ACTTAACCGGTTGTTTACCTCCTCAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACA 853
||||||||||||| ||||| || ||||| || || |||||||| |||||||||||||||
Sbjct 683 ACTTAACCGGTTGCTTACCACCGCAGATTGGGAATCTCAAGAATGTGACGGTTTTCGACG 742
Query 854 TCACTT-CAAACCGTCTACAA-GGTCCGTTACCATCTAGCGTTGGTAACATGAAGAGCCT 911
||| || ||| |||| || | ||||| || || || ||| |||| |||||||||||| |
Sbjct 743 TCAGTTTCAA-CCGTTTA-AGCGGTCCATTGCCGTCAAGCATTGGAAACATGAAGAGCTT 800
Query 912 AGAAGAGCTTCAC-GTGGCTAACAAT-GCCTTCACAGGAGTTATTCCTC-CAAGTATCTG 968
||| |||| || || ||||||||| | ||||||||||||||||| || | || ||
Sbjct 801 GGAACAGCT-CAATGTTGCTAACAATAGA-TTCACAGGAGTTATTCCAAGCA-GCATTTG 857
Query 969 CCAGCTTTCTAACCTTGAGAACTTTACTTACTCTTCCAACTACTTCTCCGGTCG-TCCTC 1027
||||| ||||||||||||||||| |||||||||||||||| |||| | ||| | | |||
Sbjct 858 TCAGCTCTCTAACCTTGAGAACTTCACTTACTCTTCCAACTTCTTCACTGGT-GATGCTC 916
Query 1028 CTATATGCGCAGCTAGTTT-GTTAGCCGACATTGTGG-TG--AACGG-TACCATGAACTG 1082
| | ||| || ||| ||| | || | | || |||| || || || | | ||||| ||
Sbjct 917 CGAGATGTGCGGCTC-TTTCGGGAGAC-A-AT-GTGGCTGTTAATGGCT-CGATGAATTG 971
Query 1083 CATCACCGGTTTGGCTCGTCAAAGATCGGATAAACAGTGCTCATCTTT-GCTTGCTCGCC 1141
|| | ||| | |||||||||||| |||| | || || ||| || | | ||||
Sbjct 972 TATTGCTGGTAAAGAACGTCAAAGATCGTCTAAAGAATGTTCTTCTCCAGCCT-CACGCC 1030
Query 1142 CTGTGGATTGCAGTAAGTTTGGATGTTACAACATCTTCTCTCCACCACCACCGACGTTTA 1201
|||| ||||| | ||| |||||||| ||||| | |||||||||||||||||| | ||||
Sbjct 1031 CTGTTGATTGTACTAAATTTGGATGCAACAACTTTTTCTCTCCACCACCACCGTCTTTTA 1090
Query 1202 AGATGTCACCTGAA-GTCCG-GACACTTCCTCCACC 1235
|||||||||| | ||||| | ||||||||||||
Sbjct 1091 AGATGTCACCC-ACCGTCCGAGT-ACTTCCTCCACC 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5