BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12050.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471353 jgi|Araly1|471353|fgenesh2_kg.1__1307__AT1G12050.1 2259 0.0
> Ahg471353 jgi|Araly1|471353|fgenesh2_kg.1__1307__AT1G12050.1
Length=1559
Score = 2259 bits (1223), Expect = 0.0
Identities = 1371/1438 (95%), Gaps = 28/1438 (2%)
Strand=Plus/Plus
Query 1 AGTCATCATCTCAAAAACGGAAGCTTAAG---AAAAATCTATACCTACCACTTCGAACTA 57
|||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 1 AGTCATCATCTCAAAAACGGCATCTTAAGAAAAAAAATCTATACCTACCACTTCGAACTA 60
Query 58 ACTCTCCTCTCTCGCTTACTGGAATTTGGGGATTAGCTTGGGAAACTTCGCCGGAGATTC 117
||||| |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCTTCTCTATCGC-AACTAGAAATTGGGGATTAGCTTGGGAAACTTCGCCGGAGATTC 119
Query 118 ATACGTCGTCGTCGTCTTTAGTATCTGTATCGTCAATGGCGTTGCTGAAGT-CTTTCATC 176
||| ||||||| | || | || | |||||||||||||||| |||| |||
Sbjct 120 ATA------CGTCGTC----G--TC-G--TC--C-ATGGCGTTGCTGAAGTCCTTT-ATC 160
Query 177 GATGTTGGCTCAGACTCGCACTTCCCTATCCAGAATCTCCCTTATGGTGTCTTCAAACCG 236
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 161 GATGTTGGCTCAGACTCACACTTCCCTATCCAGAATCTCCCTTATGGCGTCTTCAAACCG 220
Query 237 GAATCGAACTCAACTCCTCGTCCTGCCGTCGCTATCGGCGATTTGGTTCTGGACCTCTCC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GAATCGAACTCAACTCCTCGTCCTGCCGTCGCTATCGGCGATTTGGTTCTGGACCTCTCC 280
Query 297 GCTATCTCTGAAGCTGGGCTTTTCGATGGTCTGATCCTTAAGGACGCAGATTGCTTT-CT 355
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||| ||
Sbjct 281 GCTATCTCCGAAGCTGGGCTTTTCGATGGTCCGATCCTTAAGGACGCCGATTG-TTTCCT 339
Query 356 TCAGCCTAATTTGAATAAGTTCTTGGCCATGGGACGGCCTGCGTGGAAGGAAGCGCGTTC 415
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 340 TCAGCCTAATTTGAATAAGTTCTTGGCTATGGGACGGCCTGCATGGAAGGAAGCGCGTTC 399
Query 416 TACGCTGCAAAGAATCTTGTCATCTAATGAACCTATCTTGCGAGACAATGATGTTTTGAG 475
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 400 TACGCTTCAAAGAATCTTGTCATCTAATGAACCTATCTTGCGCGACAATGATGTTTTGAG 459
Query 476 GAGAAAA-TCATTCCATCAGATGAGTAAAGTGGAAATGATTGTTCCTATGGTGATTGGGG 534
|| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GA-AAAAGTCATTCTATGAGATGAGTAAAGTGGAAATGATTGTTCCTATGGTGATTGGGG 518
Query 535 ACTATACAGACTTCTTTGCATCTATGCATCACGCGAAGAACTGCGGACTTATGTTCCGTG 594
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 519 ACTATACAGACTTCTTTGCATCTATGCATCACGCGAAGAACTGCGGGCTTATGTTTCGTG 578
Query 595 GGCCTGAGAATGCGATAAACCCAAATTGGTTTCGTCTTCCCATTGCATATCATGGACGGG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GGCCTGAGAATGCGATAAACCCAAATTGGTTTCGTCTTCCCATTGCATATCATGGACGGG 638
Query 655 CATCATCTATTGTCATCTCTGGGACTGACATTATTCGACCAAGAGGTCAGGGCCATCCAC 714
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 639 CATCATCTATTGTCATCTCTGGGACCGACATTATTCGACCAAGAGGTCAGGGCCATCCGC 698
Query 715 AAGGAAACTCTGAACCATATTTTGGACCTTCGAAGAAACTTGATTTTGAGCTTGAGATGG 774
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 699 AAGGAAACTCTGAACCATATTTTGGTCCTTCGAAGAAACTTGATTTTGAGCTTGAGATGG 758
Query 775 CTGCTGTGGTTGGTCCAGGAAATGAATTGGGAAAGCCTATTGACGTGAATAATGCAGCCG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CTGCTGTGGTTGGTCCAGGAAATGAATTGGGAAAGCCTATTGACGTGAATAATGCAGCCG 818
Query 835 ATCATATATTTGGTCTATTACTGATGAATGACTGGAGTGCTAGGGATATTCAGGCGTGGG 894
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 ATCATATATTTGGTCTAGTACTGATGAATGACTGGAGTGCTAGGGATATTCAGGCGTGGG 878
Query 895 AGTATGTACCTCTTGGTCCTTTCCTGGGGAAGAGTTTTGGGACTACTATATCCCCTTGGA 954
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 879 AGTATGTACCTCTTGGTCCTTTCCTGGGGAAGAGTTTTGGGACTACGGTATCCCCTTGGA 938
Query 955 TTGTTACCTTGGATGCGCTTGAGCCTTTTGGTTGTCAAGCTCCCAAGCAGGATCCACCTC 1014
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 939 TTGTTACCTTGGATGCGCTTGAGCCTTTCGGTTGTCAAGCTCCCAAGCAGGATCCACCTC 998
Query 1015 CATTGCCATATTTGGCTGAGAAAGAGTCTGTAAATTACGATATCTCCTTGGAGGTTCAAC 1074
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 999 CATTGCCATATTTGGCTGAGAAAGAATCTGTAAATTACGATATCTCCTTGGAGGTTCAAC 1058
Query 1075 TTAAACCTTCTGGCAGAGATGATTCTTGTGTAATAACAAAGAGCAACTTCCAAAACTTAT 1134
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TTAAACCTTCTGGCAAAGATGATTCTTGTGTAATAACAAAGAGCAACTTCCAAAACTTAT 1118
Query 1135 ATTGGACCATAACGCAGCAGCTAGCACACCATACCGTTAACGGTTGCAATTTGAGGCCTG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATTGGACCATAACGCAGCAGCTAGCACACCATACCGTTAACGGTTGCAATTTGAGGCCTG 1178
Query 1195 GTGATCTCCTTGGCACAGGAACCATAAGCGGACCGGAGCCAGATTCATATGGGTGCCTAC 1254
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GCGATCTCCTTGGCACCGGAACCATAAGCGGACCGGAGCCAGATTCATATGGGTGCCTAC 1238
Query 1255 TTGAGTTGACATGGAATGGACAGAAACCTCTATCACTCAATGGAACAACTCAGACGTTTC 1314
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1239 TTGAGTTGACTTGGAATGGACAGAAACCTCTATCACTCAGCGGAACAACTCAGACGTTTC 1298
Query 1315 TCGAAGACGGAGACCAAGTCACCTTCTCAGGTGTATGCAAGGGAGATGGTTACAATGTTG 1374
|| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1299 TCCAGGACGGAGACCAAGTCACCTTGTCAGGTGTATGCAAGGGAGATGGTTACAATGTCG 1358
Query 1375 GGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTGTCGCCGG 1432
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1359 GGTTTGGAACATGCACAGGGAAAATTGTTCCTTCACCGCCTTGATCAGCTCTCGCCGG 1416
Score = 115 bits (62), Expect = 1e-24
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1532 TCTCGATATTAGTGTAATATGTTACTGAATCTTTTATAAAGAAAGACAACGGAATATTAG 1591
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1483 TCTCGATATTGGCGTAATATGTTATTGAATCTTTTATAAAGAAAGACAACGGAATATTAA 1542
Query 1592 TAACTTTCAATATAAAA 1608
||||||||||||| |||
Sbjct 1543 TAACTTTCAATATGAAA 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5