BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G12060.1

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471354 jgi|Araly1|471354|fgenesh2_kg.1__1308__AT1G12060.1         784    0.0  


> Ahg471354 jgi|Araly1|471354|fgenesh2_kg.1__1308__AT1G12060.1
Length=636

 Score =  784 bits (424),  Expect = 0.0
 Identities = 530/581 (91%), Gaps = 8/581 (1%)
 Strand=Plus/Plus

Query  1    ATGAAACGTTCAAGAAAATTCTCATCGTCGACAACAACAACCACCGTTATTCACACTTTC  60
            |||||| |||||| |||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct  1    ATGAAAAGTTCAAAAAAATTCTCATCGTCGTCAACAACCACCACCGTTATCCACACTTTC  60

Query  61   TATAATGACCATACTACCCCTCCGGCAACCAAAGAAATCCCGATTGAAACTCCAT-TAC-  118
             |||||||||||| | ||| ||| ||||||||| ||||||||||||||||||||| | | 
Sbjct  61   GATAATGACCATATTTCCCATCCAGCAACCAAACAAATCCCGATTGAAACTCCATCTTCG  120

Query  119  -CGGCGACGAAAGCCAACGTCAAAACAAACGCCACCGCCGCAGCAGCGAGGATTCAGTCT  177
             || |||||| ||||| || | | || |||||  ||||||||||||| ||||| ||||||
Sbjct  121  ACGACGACGAGAGCCACCGACCAGACTAACGCTGCCGCCGCAGCAGCCAGGATCCAGTCT  180

Query  178  GGCTACCGTTCTTATAGGATCCGAAACCTATACAAGAAAATCTCATCCATCAATCGGGAA  237
            ||||| |||||||| |||||||||  |||||||||||||||||||||| |||||||||||
Sbjct  181  GGCTATCGTTCTTACAGGATCCGAGGCCTATACAAGAAAATCTCATCCGTCAATCGGGAA  240

Query  238  GCGAACCGTGTACAGAGCATAATCCAACGGCAAGAAACAGTAGACGCCATTAGAAGCGAT  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  241  GCGAACCGTGTACAGAGCATAATCCAACGGCAAGAAACAGTAGACGCCATTAGAAGCAAT  300

Query  298  GAGAAGGAACGTCTGAGAATGAACGAGACTCTGATGGCTCTGCTTCTGAAACTAGACTCC  357
            ||||| ||||| |||||||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct  301  GAGAAAGAACGGCTGAGAATGAACGAGACTTTAATGTCTCTGCTTCTGAAACTAGATTCC  360

Query  358  GTCCCTGGTTTAGATCCGACGATCAGAGAAGCTCGGAGGAAAGTGAGCCGTAAGATCGTA  417
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  361  GTTCCTGGTTTAGATCCGACGATAAGAGAAGCTCGGAGGAAAGTGAGCCGTAAGATCGTA  420

Query  418  GGGATGCAGGAAATACTCGATTCAATCTCGGAGACTAAAGACGAAATTCAATGGTGGAAT  477
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |
Sbjct  421  GGGATGCAGGAAATACTCGATTCAATCTCGGAGACTAAAGACGAAATTCAGTGGTGGTCT  480

Query  478  TACAACGATCTCGGCGGAGTAGACT-CCGGACAAGGCGGTGGCGCGTGGCCTTTGTATTG  536
            ||||||||||||||   ||| || | ||||||||||||| ||||||||||||||||||||
Sbjct  481  TACAACGATCTCGG---AGTCGA-TGCCGGACAAGGCGGCGGCGCGTGGCCTTTGTATTG  536

Query  537  GGAAGAAGCGGTggaggaagagatgtgtagagagagaggcg  577
            ||||||||||||||||||||||||||||||||||| |||||
Sbjct  537  GGAAGAAGCGGTGGAGGAAGAGATGTGTAGAGAGAAAGGCG  577


 Score = 54.7 bits (29),  Expect = 8e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  620  GATGTTTCCAGAGATTTCTCAGAGAATGA  648
            |||||||||||||||||||||||||||||
Sbjct  577  GATGTTTCCAGAGATTTCTCAGAGAATGA  605



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23750577291


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5