BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12064.1
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471355 jgi|Araly1|471355|fgenesh2_kg.1__1309__AT1G12064.1 603 6e-172
> Ahg471355 jgi|Araly1|471355|fgenesh2_kg.1__1309__AT1G12064.1
Length=495
Score = 603 bits (326), Expect = 6e-172
Identities = 440/493 (89%), Gaps = 15/493 (3%)
Strand=Plus/Plus
Query 1 AATAACATTCTCAAAGATATAAATTTCCAAACTCTCTCACAAACCAAAACCAAATTCCAA 60
|||||||||||| |||||| |||||| | ||||||||||||||||||||||||| |||||
Sbjct 1 AATAACATTCTCGAAGATACAAATTT-C-AACTCTCTCACAAACCAAAACCAAAATCCAA 58
Query 61 CATGAAGAAGACCT---ACAAGCTTCAAAGCCTCTTCTCTTCTCTCATCTTCCTC---AT 114
||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 59 TATGAAGAAGACCTACAACAAGTTTCAAAGCATCTTCTCTTCTCTCATCATCCTCATAAT 118
Query 115 AATCTTGCTATTGATTTCGAGAGCCGCGGCCGT-C-GGCTCTGGCGGTGTCTGCCGGCAT 172
|||| |||||| | ||||||||||||| | | | | ||||| || ||||| || ||||||
Sbjct 119 AATCCTGCTATCGGTTTCGAGAGCCGCCG-C-TACTGGCTCCGGTGGTGTTTGTCGGCAT 176
Query 173 CCACCATCACAAAACAGCTGCAAGACATGCATGGCGGAGCAAATGAAATACGACTGCCCT 232
|| || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 177 CCGCCGTCACAAAACAGCTGCAAGACATGCATGGCGGAGCAAATGATATACGCCTGCCCT 236
Query 233 AAGTGCGTGCCGGTGCTCCGATGCATGGCTCGTTGTCTTTGGGGCGGTGTTACTCAGAGG 292
|||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
Sbjct 237 AAGTGCGTGCCGGTGCTCCGTTGCATGGCTCGTTGCCTTTGGGGCGGTGTGACACAGAGG 296
Query 293 AAGTGCACCACCACGTGTCGATGCGACACCGCGGCCAAGCCGTCGTTGCTGGAGTGTAAA 352
|||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 297 AAGTGCACCACCACGTGTGGATGCGACACGGCGGCCAAGCCGTCGCTGCTGGAGTGTAAA 356
Query 353 CGCTGCGTTTCTAGGTGTAAGTGTAGCTGTGCGGCTTAGGAACAAATCGAGTAAATGCTC 412
||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 357 CGCTGCGTTTCAAGGTGTAAGTGTAGCTGTGCGGCTTAGGAACAAATCGACTTAATGCTC 416
Query 413 TCTTGATGGTAAAATAATATGTTAAATGTTACCATGTTGGATCTTTGTCTCTTTAACTTG 472
|||||||| ||||||||| ||||||||||| || || | |||||||| |||||||||
Sbjct 417 TCTTGATGTTAAAATAATGTGTTAAATGTTGG-ATCTTTG-TCTTTGTCG-TTTAACTTG 473
Query 473 ATGTTATATATGT 485
|||| |||||||
Sbjct 474 GTGTTGTATATGT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21901308086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5