BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12070.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334500 jgi|Araly1|334500|fgenesh1_pg.C_scaffold_1001065 1055 0.0
> Ahg334500 jgi|Araly1|334500|fgenesh1_pg.C_scaffold_1001065
Length=669
Score = 1055 bits (571), Expect = 0.0
Identities = 640/673 (95%), Gaps = 5/673 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTGAACGATGAGGAGATGAAAGCTGGAGAGTCTTCAGAAGAGCCAAAGGGACAA 60
||||||||||| ||||| | || |||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGTTTTGAAAGATGA-G-GA-GAAAGCTGGAGAGTCTTCAGAAGACCCAAAGGGGCAA 57
Query 61 GGGCTAAGCAGGAAAAATAGCCATAGCTCTATGTGTCCGACAGATGATGATGAAGAAGAA 120
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GGGTTAAGCAGGAAAAACAGCCATAGCTCTATGTGTCCGACAGATGATGATGAAGAAGAA 117
Query 121 GAAGACAAGAAACTCGAACTTGGTCCCATGATTGCTCTTAAAGAACAGCTCGAGAAAGAC 180
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAAGATAAGAAACTTGAACTTGGTCCCATGATTGCTCTTAAAGAACAGCTCGAGAAAGAC 177
Query 181 AAGGATGATGAAAGCTTGAGGAGATGGAAGGAGCAACTTCTAGGCAGCGTGGATCTTGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGGATGATGAAAGCTTGAGGAGATGGAAGGAGCAACTTCTAGGCAGCGTGGATCTTGAG 237
Query 241 GAGGTCGGAGAGACTCCGGATCCA-CTGGTAAAGATACTAACCTTAACAATTAGGTCACC 299
||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 238 GAGGTCGGAGAAACTCCGGATCCGGC-GGTAAAGATACTGACCTTAACAATTAGGTCACC 296
Query 300 GGATAGAGAAGACATGGTATTAACGATCCCTGAAAACGGAAAACCGGCTTCGAAAGGACC 359
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 297 GGATAGAGAAGACATGGTATTAACTATACCTGAAAACGGAAAACCGACTTCGAAAGGACC 356
Query 360 ATGGTTCACTCTCAAAGAAGGCTCTAAGTACACTCTCATATTTACTTTCCGTGTCACCAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATGGTTCACTCTCAAAGAAGGCTCTAAGTACACTCTCATATTTACTTTCCGTGTCACCAA 416
Query 420 CAACATTGTGTCCGGCCTCCAATACAGCAATACAGTTTGGAAGACCGGAATCAAGGTGTA 479
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAACATTGTGTCCGGGCTCCGGTACAGCAATACAGTTTGGAAGACCGGAATCAAGGTGTA 476
Query 480 TAGTAGAAAGGAGATGTTAGGAACGTTTAGTCCACAGGCGGAACCGTACACTCATGTTAT 539
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 477 TAGTAGGAAGGAGATGTTAGGAACGTTTAGTCCACAGGCGGAACCGTACAATCATGTCAT 536
Query 540 GTTTGAAGAGACGGCACCCTCTGGTCTACTCGTTAGAGGCTCTTATTCTGTTAAATCTAA 599
||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||||
Sbjct 537 GTTTGAAGAGACGGCGCCTTCTGGTCTGCTTGTTAGAGGCTCCTATTCTGTTAAATCTAA 596
Query 600 GTTCGTCGATGATGATAATCAGTGCTACTTGGAGAACAACTACACCTTCGACATTCGCAA 659
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTTCGTCGATGACGATGATAAGTGCTACTTGGAGAACAACTACACCTTCGACATTCGCAA 656
Query 660 AAATTGGCTGTGA 672
||||||||||||
Sbjct 657 GAATTGGCTGTGA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5