BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12080.2
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471358 jgi|Araly1|471358|fgenesh2_kg.1__1312__AT1G12080.2 1085 0.0
> Ahg471358 jgi|Araly1|471358|fgenesh2_kg.1__1312__AT1G12080.2
Length=703
Score = 1085 bits (587), Expect = 0.0
Identities = 668/706 (95%), Gaps = 9/706 (1%)
Strand=Plus/Plus
Query 1 ATTTGCTTCTACTATAAATACCCCTCCTCTTGATCAAATCTCTTCACTCATCAAAACATC 60
|||||||||||||||||||| || |||||||||||||| |||||||||| |||| ||||
Sbjct 1 ATTTGCTTCTACTATAAATA--CC-CCTCTTGATCAAATATCTTCACTCACCAAAGCATC 57
Query 61 ACATACACTATTTTTCTCCTCTCCTTATTGTCTATATATTT---T-TCCTCTTTAGCTTT 116
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 58 ACATACTCTATTTTTCTCCTCTCCTTATTGTCTATATATTTAGATATCCTCTTTAGCTTT 117
Query 117 TTCATTTCGAAATGGCCACCGTTGAGGTTGAACAAGTCACTCCAGTAGCAGTAGAGAACG 176
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 118 TTCATTTCGAAATGGCCACCGTTGAGGTTGAACAAGTGACTCCAGTAGCAGTAGAGAACG 177
Query 177 TTGAGGTACCAACAAAGACAGTGGAGGAGACAGTGGTGGAGACAGAGGTGACCCAACAGC 236
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 TTGAGGTACCAACAAAGACAGTGGAGGAGCCAGTGGTGGAGACAGAGGTGACCCAACAGC 237
Query 237 CGGAAGAATCCGTCCCCGCCGTGACAGAACAAAAATCCGAAGCACCAATTGTagaaacaa 296
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 238 CGGAAGAATCCGTCCCCGCCGTGACAGAACAAGAATCCGAAGCACCAGTTGTAGAAACGA 297
Query 297 acgaagaagtggttgtggaagaggcagagaagaaagatgaagaaaccgagaagaaaacag 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCGAAGAAGTGGTTGTGGAAGAGGCAGAGAAGAAAGATGAAGAAACCGAGAAGAAAACAG 357
Query 357 aggagaaagacgagaagacagaagTGATCACGGAAACTCCGGTAGTTGAGGAGGAGGAGA 416
||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 358 AGGAGGAAGAAGAGAAGACAGAGGTGATCACGGAAACTCCGGCAGTTGAGGAGGAGGAGA 417
Query 417 AGAAAGCTGAGGAAGTGACCGAAACTCCGGCGGTTGTGGAGGAGGAGAAGAAGACAGAGG 476
||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||
Sbjct 418 AGAAAGCTGAGGAAGTGACAGAAACCCCGGCGATTGTGGAGGAAGAGAAGAAGACAGAGG 477
Query 477 TGGTTGAGGAGAAACAGACTGAGGTTGCGGCTGCTGAGGAAGTCGCCGTTGAGAAGGCCG 536
||| |||||||||| |||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 478 CGGTGGAGGAGAAACCGACTGAAGTTGGGGCTGCTGAGGAAGTCGCCGTCGAGAAGGCCG 537
Query 537 AGGAGTAAAGAGGAAGGAAGAAGCTATATAT--GACCttttttggtctcatatcgttttc 594
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 538 ATGAGTAAAGAGGAAGGAAGAAGCTATATATATGACCTCTTTTGGTCTCATATCGTTTTC 597
Query 595 tgtttattttattttatcaacatttcataagtattttctatGTTTGTTGGGTTTGTTATG 654
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 598 TGTTTATTTTATTTTATCAACATTCCATAAGTATTTTCTATGTTTGTTGGGTTTGTTATG 657
Query 655 ATGAAATCAGATGTTTGGATCTTTTAATGGTTGCTACATTGTTTAC 700
||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 658 ATGAAATCAGATGTTTGAATCTTTTAATGGGTGCTACATTGTTTAC 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5