BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12090.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471359 jgi|Araly1|471359|fgenesh2_kg.1__1313__AT1G12090.1 924 0.0
> Ahg471359 jgi|Araly1|471359|fgenesh2_kg.1__1313__AT1G12090.1
Length=813
Score = 924 bits (500), Expect = 0.0
Identities = 639/701 (91%), Gaps = 29/701 (4%)
Strand=Plus/Plus
Query 19 ACGCTCTTGGGCTTTTCTTGAAACCACTATAAAACCTATCTCAATT-CTTTCATTTTCTC 77
||||||||| | |||||||||||||||||||||||| ||||||||| | |||| || |||
Sbjct 1 ACGCTCTTGCGTTTTTCTTGAAACCACTATAAAACCCATCTCAATTCCCTTCACTTGCTC 60
Query 78 CACACCCAATTCACTCACAACCTAGCTAGCTAGTAAACAGTATTTTCTATATACCAAAAA 137
||||||||||||||||| || | | |||| | || | | | | | ||| ||
Sbjct 61 CACACCCAATTCACTCATAA-C--G-TAGC---T----AG-A-TGGC--T-T--CAAGAA 102
Query 138 TGGCTTCAAGTTCCATAGCTCTTTTCTTGGCTCTCAATCTTCTCTTTTTCACAACAATCT 197
| |||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 103 ---CCACAAGCTCCATAGCCCTTTTCTTGGCTCTCAATCTCCTTTTTTTCACAACAATCT 159
Query 198 CCGCCTGTGGTAGCTGTACTCCGTGCGGCGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAA 257
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 160 CCGCCTGTGGTAGCTGCACTCCGTGCGGTGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAA 219
Query 258 CTCCTAAACCAACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCA 317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CTCCTAAACCGACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCA 279
Query 318 AGCTCGGTGTCTGCGCTAATGTGCTCAACGGCCTCCTGGACTTGACCCTTGGCAAGCCAC 377
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 280 AGCTCGGTGTCTGCGCTAATGTGCTCAACGGGCTCCTCGACTTGACCCTTGGCAAGCCAC 339
Query 378 CGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAGGCAGCCGTTTGTC 437
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 340 CGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAAGCAGCCGTTTGTC 399
Query 438 TCTGCACCGCTCTTAAGGCTAACATTCTTGGAATCAACTTGAACCTCCCAATATCTTTAA 497
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 400 TCTGCACCGCCCTTAAGGCTAACATTCTTGGAATCAACTTAAACCTCCCAATCTCTCTAA 459
Query 498 GTCTACTCCTTAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAAAAACCAT 557
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 460 GTCTGCTCCTCAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAATAACCAT 519
Query 558 ATTGATATATAATTTAAATACACTTATGTGTGTATTAATTTATCTTCTTGTTTTAAAGAG 617
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 520 ATTGATATATAATTTAAATACACTTATGTGT--AT-A-TTTATCTTCTTGTTTTAAAGAG 575
Query 618 ACAGGGTGATTCTCTATACTCTTAT-ATTGTGTCTTTATATATCTTGATCTGTGGTTTCT 676
||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 576 ACAAGGTGATTCT--ATACTCTTATTATTGTGTCTTTATATATCTTGATCTGTGGTTTCT 633
Query 677 TCTACTCTGCTTGCTCTGGTGTTCATTGGGGTGATCCGTAA 717
|||| ||| |||||||||||||||||||| |||||||||||
Sbjct 634 TCTAGTCTTCTTGCTCTGGTGTTCATTGGAGTGATCCGTAA 674
Score = 135 bits (73), Expect = 4e-31
Identities = 125/147 (85%), Gaps = 15/147 (10%)
Strand=Plus/Plus
Query 746 TCC-TATTATATATACTCTTACCATTGGGGGTATTGTTGTATTG----G----TTTGTAT 796
||| || ||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 668 TCCGTAATATATATACTCTTACCATTGGGGGTATTGCTGTATTGATTTGTAACTTTGTAT 727
Query 797 TATGATTCTATGAATTAATAAGAATTTAACTTTTATGTTATGGATTCATTAT-TAT---A 852
||||||||||||||||||||||||||||| ||||||||| |||| ||| ||| ||| |
Sbjct 728 TATGATTCTATGAATTAATAAGAATTTAATTTTTATGTTGTGGACTCAATATATATTTTA 787
Query 853 CG-GAATATTGTGTTTTATGGTTTATA 878
| ||||||| ||||||||||||||||
Sbjct 788 -GTGAATATTATGTTTTATGGTTTATA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5