BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G12110.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920044 jgi|Araly1|920044|scaffold_101325.1 3193 0.0
> Ahg920044 jgi|Araly1|920044|scaffold_101325.1
Length=2004
Score = 3193 bits (1729), Expect = 0.0
Identities = 1927/2019 (95%), Gaps = 28/2019 (1%)
Strand=Plus/Plus
Query 97 TCCATCTTCAAG--ATGTCTCTTCCTGAAACTAAATCTGATGATATCCTTCTTGATGCTT 154
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 8 TCCATCTTCAAGATATGTCTCTTCCTGAAACTAAATCTGATG---TCCTTCTTGATGCTT 64
Query 155 GGGACTTCCAAGGCCGTCCCGCCGATCGCTCAAAAACCGGCGGCTGGGCCAGCGCCGCCA 214
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GGGACTTCCAAGGCCGCCCCGCCGATCGCTCAAAAACCGGCGGCTGGGCCAGCGCCGCCA 124
Query 215 TGATTCTTTGTATTGAGGCCGTGGAGAGGCTGACGACGTTAGGTATCGGAGTTAATCTGG 274
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 125 TGATTCTTTGTATTGAGGCGGTGGAGAGGCTGACGACATTAGGTATCGGAGTTAACCTGG 184
Query 275 TGACGTATTTGACGGGAACTATGCATTTAGGCAATGCAACTGCGGCTAACACCGTTACCA 334
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 185 TGACGTATTTGACGGGAACTATGCATTTAGGCAATGCAACGGCGGCTAACACTGTTACCA 244
Query 335 ATTTCCTCGGAACTTCTTTCATGCTCTGTCTCCTCGGTGGCTTCATCGCCGATACCTTTC 394
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 245 ATTTCCTCGGAACCTCTTTCATGCTCTGTCTCCTCGGTGGCTTCATCGCTGATACCTTTC 304
Query 395 TCGGCAGGTACCTAACGATTGCTATATTCGCCGCAATCCAAGCCACGGGTGTTTCAATCT 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCGGCAGGTACCTAACGATTGCTATATTCGCCGCAATCCAAGCCACGGGTGTTTCAATCT 364
Query 455 TAACTCTATCAACAATCATACCGGGACTTCGACCACCAAGATGCAATCCAACAACGTCGT 514
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 365 TAACTCTATCAACAATCATACCGGGACTTCGACCACCAAGATGCAACCCAACGACGTCGT 424
Query 515 CTCACTGCGAACAAGCAAGTGGAATACAACTGACGGTCCTATACTTAGCCTTATACCTCA 574
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 CTCATTGCGAACAAGCAAGTGGAATACAATTGACGGTCCTATACTTAGCCTTATACCTCA 484
Query 575 CCGCTCTAGGAACGGGAGGCGTGAAGGCTAGTGTCTCGGGTTTCGGGTCGGACCAATTCG 634
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CCGCCCTAGGAACGGGGGGCGTGAAGGCTAGTGTCTCGGGTTTCGGGTCGGACCAATTCG 544
Query 635 ATGAGACCGAACCAAAAGAACGATCGAAAATGACATATTTCTTCAACCGTTTCTTCTTTT 694
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 545 ATGAGACCGAGCCTAAAGAACGATCAAAAATGACATATTTCTTCAACCGTTTCTTCTTTT 604
Query 695 GTATCAACGTTGGCTCTCTTTTAGCTGTGACGGTCCTTGTCTACGTACAAGACGATGTTG 754
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 605 GTATCAACGTTGGCTCTCTTTTAGCCGTGACGGTCCTTGTCTACGTACAAGACGATGTTG 664
Query 755 GACGCAAATGGGGCTATGGAATTTGCGCGTTTGCGATCGTGCTTGCACTCAGCGTTTTCT 814
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 665 GACGCAAATGGGGCTATGGAATTTGTGCGTTTGCGATCGTGCTTGCACTCAGCGTTTTCT 724
Query 815 TGGCCGGAACAAACCGCTACCGTTTCAAGAAGTTGATCGGTAGCCCGATGACGCAGGTTG 874
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 725 TGGCCGGCACAAACCGCTACCGTTTCAAGAAGTTGATCGGTAGTCCGATGACGCAGGTTG 784
Query 875 CTGCGGTTATCGTGGCGGCGTGGAGGAATAGGAAGCTCGAGCTGCCGGCAGATCCGTCCT 934
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 785 CTGCGGTTATCGTGGCAGCGTGGAGGAATAGAAAGCTCGAGCTGCCGGCAGATCCGTCGT 844
Query 935 ATCTCTACGATGTGGATGATATTATTGCGGCGGAAGGTTCGATGAAGGGTAAACAAAAGC 994
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 ATCTCTACGACGTGGACGATATTATTGCGGCGGAAGGTTCGATGAAGGGTAAACAAAAGC 904
Query 995 TGCCACACACTGAACAATTCCGTTCATTAGATAAGGCAGCAATAAGGGATCAGGAAGCGG 1054
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 905 TGCCACACACCGAACAATTCCGTTCATTGGATAAGGCAGCAATAAGGGATCAGGAAGCGG 964
Query 1055 GAGTTACCTCGAATGTATTCAACAAGTGGACACTCTCAACACTAACAGATGTTGAGGAAG 1114
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GAGTTACCTCGAATATATTCAACAAGTGGACACTCTCAACACTAACAGATGTTGAGGAAG 1024
Query 1115 TGAAACAAATCGTGCGAATGTTACCAATTTGGGCAACATGCATCCTCTTCTGGACCGTCC 1174
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TGAAACAAATCGTGCGGATGTTACCAATTTGGGCAACATGCATCCTCTTCTGGACCGTCC 1084
Query 1175 ACGCTCAATTAACGACATTATCAGTCGCACAATCCGAGAC-ATTGGACCGTTC-CATCGG 1232
||||||||||||||||||||||||| |||||||||||||| || ||||||| | ||||||
Sbjct 1085 ACGCTCAATTAACGACATTATCAGTAGCACAATCCGAGACTAT-GGACCGT-CACATCGG 1142
Query 1233 GAGCTTCGAGATCCCTCCAGCATCGATGGCAGTCTTCTACGTCGGTGGCCTCCTCCTAAC 1292
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GAGCTTTGAGATCCCTCCAGCATCGATGGCAGTCTTCTACGTCGGTGGCCTCCTCCTAAC 1202
Query 1293 CACCGCCGTCTATGACCGCGTCGCCATTCGTCTATGCAAAAAGCTATTCAACTACCCCCA 1352
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1203 CACCGCCCTCTATGACCGCGTCGCCATTCGCCTATGCAAAAAGCTATTCAACTACCCCCA 1262
Query 1353 TGGTCTAAGACCGCTTCAACGGATCGGTTTGGGGCTTTTCTTCGGATCAATGGCTATGGC 1412
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1263 TGGTCTTAGACCGCTTCAACGGATCGGTTTGGGGCTTTTATTCGGATCAATGGCTATGGC 1322
Query 1413 TGTGGCTGCTTTGGTCGAGCTCAAACGTCTTAGAACTGC-ACACGCTCATGGTCCAACAG 1471
||||||||||||||| ||||| |||||||||||||| || | | || ||||||||||| |
Sbjct 1323 TGTGGCTGCTTTGGTAGAGCTAAAACGTCTTAGAACCGCGA-ATGCCCATGGTCCAACGG 1381
Query 1472 TCAAAACGCTTCCTCTAGGGTTTTATCTACTCATCCCACAATATCTTATTGTCGGTATCG 1531
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TCAAAACACTTCCTCTAGGGTTTTATCTACTCATCCCACAATATCTTATTGTCGGTATCG 1441
Query 1532 GCGAAGCGTTAATCTACACAGGACAGTTAGATTTCTTCTTGAGAGAGTGCCCTAAAGGTA 1591
|||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1442 GCGAGGCGTTAATCTACACGGGACAGTTGGATTTCTTCTTGAGAGAGTGCCCTAAAGGCA 1501
Query 1592 TGAAAGGGATGAGCACGGGTCTATTGTTGAGCACATTGGCATTAGGCTTTTTCTTCAGCT 1651
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1502 TGAAAGGGATGAGCACGGGTCTATTGTTGAGCACATTGGCATTAGGGTTTTTCTTCAGCT 1561
Query 1652 CGGTTCTCGTGACAATCGTCGAGAAATTCACCGGGAAAGCTCATCCATGGATTGCCGATG 1711
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 CAGTTCTCGTGACCATCGTCGAGAAATTCACCGGGAAAGCTCATCCATGGATTGCCGATG 1621
Query 1712 ATCTCAACAAGGGCCGTCTTTACAATTTCTACTGGCTTGTGGCCGTACTTGTTGCCTTGA 1771
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1622 ATCTCAACAAGGGACGTCTTTACAATTTCTACTGGCTTGTGGCCGTACTTGTCGCCTTGA 1681
Query 1772 ACTTCCTCATTTTCCTAGTTTTCTCCAAGTGGTACGTTTACAAGGAAAAAAGACTAGCTG 1831
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1682 ACTTCCTCATTTTCCTCGTTTTCTCCAAGTGGTACGTTTACAAAGAAAAGAGACTAGCTG 1741
Query 1832 AGGTGGGGATTGAGTTGGATGATGAGCCGAGTATTCCAATGGGtcattgatcatgaattc 1891
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1742 ATGTCGGGATTGAGTTGGATGATGAGCCGAGTATTCCAATGGGTCATTGATCATGA-T-C 1799
Query 1892 atgatcatgatcatgatgatgaacattatgcatgtctatgttgatatgtttgaatttgat 1951
||||| ||| || | | | | ||||||||||||||||||||||||| ||||||
Sbjct 1800 ATGAT---GAT---GA--AC-A-C-TG-TGCATGTCTATGTTGATATGTTTGA-TTTGAT 1846
Query 1952 tttgagttttgtttgtatattttatgatgctttt-CTTAATTACCTCTTGTTTCCGAGTC 2010
|||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 1847 TTTGAGTTTTGTG-GTATATTTAATGATGATTTTTCTTAATTACCTCTTGTTTCCGAGTC 1905
Query 2011 GACAAATAATGGACCGACCGATAAGGGATAAAAGTTAAAGTTTTCCCATCAGGTTCTGTA 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 GACAAATAATGGACCGACCGATAAGGGATAAAAGTTAAAGTTTTCCCATCAGGTTCTGTA 1965
Query 2071 TAAAAGCAGAAATTGTAACATTTCTTAAGATTTGACGCA 2109
|||||||||||||||||| ||||| ||||||||||||||
Sbjct 1966 TAAAAGCAGAAATTGTAAAATTTCCTAAGATTTGACGCA 2004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5